SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    900601 8vkb:B (2.43) BS02 A1AB8 N/A GO:0004379 ... A5K1A2 38680035
    900602 8vkb:C (2.43) BS01 MYA N/A GO:0004379 ... A5K1A2 38680035
    900603 8vkb:C (2.43) BS02 A1AB8 N/A GO:0004379 ... A5K1A2 38680035
    900604 8vkc:AAA (2.03) BS01 HEM N/A GO:0019825 ... Q9NAV8 38959050
    900605 8vkc:AAA (2.03) BS02 NPO N/A GO:0019825 ... Q9NAV8 38959050
    900606 8vkc:BBB (2.03) BS01 HEM N/A GO:0019825 ... Q9NAV8 38959050
    900607 8vkc:BBB (2.03) BS02 NPO N/A GO:0019825 ... Q9NAV8 38959050
    900608 8vkd:AAA (1.4) BS01 HEM N/A GO:0019825 ... Q9NAV8 38959050
    900609 8vkd:AAA (1.4) BS02 4NC N/A GO:0019825 ... Q9NAV8 38959050
    900610 8vkd:BBB (1.4) BS01 HEM N/A GO:0019825 ... Q9NAV8 38959050
    900611 8vkd:BBB (1.4) BS02 4NC N/A GO:0019825 ... Q9NAV8 38959050
    900612 8vkf:A (1.7) BS01 HEM ? GO:0004497 ... Q2IU02 39911918
    900613 8vkf:A (1.7) BS02 LVK ? GO:0004497 ... Q2IU02 39911918
    900614 8vkh:A (3.63) BS01 ADP N/A GO:0000287 ... P68135 39448849
    900615 8vkh:B (3.63) BS01 ADP N/A GO:0000287 ... P68135 39448849
    900616 8vkh:C (3.63) BS01 ADP N/A GO:0000287 ... P68135 39448849
    900617 8vkh:D (3.63) BS01 ADP N/A GO:0000287 ... P68135 39448849
    900618 8vkh:E (3.63) BS01 ATP N/A GO:0000287 ... P68135 39448849
    900619 8vkh:F (3.63) BS01 ATP N/A GO:0000287 ... P68135 39448849
    900620 8vkh:G (3.63) BS01 CA N/A GO:0003779 ... P06396 39448849
    900621 8vkh:G (3.63) BS02 CA N/A GO:0003779 ... P06396 39448849
    900622 8vkh:G (3.63) BS03 CA N/A GO:0003779 ... P06396 39448849
    900623 8vkh:G (3.63) BS04 CA N/A GO:0003779 ... P06396 39448849
    900624 8vkh:H (3.63) BS01 CA N/A GO:0003779 ... P06396 39448849
    900625 8vkh:H (3.63) BS02 CA N/A GO:0003779 ... P06396 39448849
    900626 8vkh:H (3.63) BS03 CA N/A GO:0003779 ... P06396 39448849
    900627 8vkh:H (3.63) BS04 CA N/A GO:0003779 ... P06396 39448849
    900628 8vki:2 (2.96) BS01 rna N/A GO:0003735 ... A0QSG7 39913204
    900629 8vki:2 (2.96) BS02 rna N/A GO:0003735 ... A0QSG7 39913204
    900630 8vki:4 (2.96) BS01 rna N/A GO:0003924 ... A0QVY1 39913204
    900631 8vki:C (2.96) BS01 rna N/A GO:0002181 ... A0QSD4 39913204
    900632 8vki:D (2.96) BS01 rna N/A GO:0003735 ... A0QSD1 39913204
    900633 8vki:E (2.96) BS01 rna N/A GO:0003735 ... A0QSD2 39913204
    900634 8vki:F (2.96) BS01 rna N/A GO:0000049 ... A0QSG1 39913204
    900635 8vki:F (2.96) BS02 rna N/A GO:0000049 ... A0QSG1 39913204
    900636 8vki:G (2.96) BS01 rna N/A GO:0002181 ... A0QSG4 39913204
    900637 8vki:H (2.96) BS01 rna N/A GO:0003735 ... A0R7F6 39913204
    900638 8vki:I (2.96) BS01 rna N/A GO:0003735 ... A0QS62 39913204
    900639 8vki:J (2.96) BS01 rna N/A GO:0003735 ... A0QS45 39913204
    900640 8vki:K (2.96) BS01 rna N/A GO:0003729 ... A0QSP8 39913204
    900641 8vki:L (2.96) BS01 rna N/A GO:0003735 ... A0QSF9 39913204
    900642 8vki:M (2.96) BS01 rna N/A GO:0003735 ... A0QSG8 39913204
    900643 8vki:N (2.96) BS01 rna N/A GO:0003735 ... A0QSD8 39913204
    900644 8vki:O (2.96) BS01 rna N/A GO:0003735 ... A0QSL9 39913204
    900645 8vki:P (2.96) BS01 rna N/A GO:0003735 ... A0QSG5 39913204
    900646 8vki:P (2.96) BS02 rna N/A GO:0003735 ... A0QSG5 39913204
    900647 8vki:Q (2.96) BS01 rna N/A GO:0003735 ... A0QV42 39913204
    900648 8vki:R (2.96) BS01 rna N/A GO:0000027 ... A0QYU6 39913204
    900649 8vki:S (2.96) BS01 rna N/A GO:0003723 ... A0R151 39913204
    900650 8vki:T (2.96) BS01 rna N/A GO:0003735 ... A0QSD6 39913204
    900651 8vki:U (2.96) BS01 rna N/A GO:0003735 ... A0QSD3 39913204
    900652 8vki:V (2.96) BS01 rna N/A GO:0003723 ... A0QSG0 39913204
    900653 8vki:W (2.96) BS01 rna N/A GO:0003723 ... A0R3D2 39913204
    900654 8vki:X (2.96) BS01 rna N/A GO:0003735 ... A0R150 39913204
    900655 8vki:Y (2.96) BS01 rna N/A GO:0003735 ... A0QV03 39913204
    900656 8vki:Z (2.96) BS01 rna N/A GO:0003735 ... A0QSD9 39913204
    900657 8vki:b (2.96) BS01 rna N/A GO:0003735 ... A0R3I9 39913204
    900658 8vki:c (2.96) BS01 rna N/A GO:0003735 ... A0QS39 39913204
    900659 8vki:d (2.96) BS01 rna N/A GO:0003735 ... A0R7K0 39913204
    900660 8vki:e (2.96) BS01 rna N/A GO:0003735 ... A0QYU7 39913204
    900661 8vki:f (2.96) BS01 rna N/A GO:0003735 ... A0QSL4 39913204
    900662 8vkj:A (2.92) BS01 ACO N/A GO:0005765 ... Q68CP4 38918376
    900663 8vkj:B (2.92) BS01 ACO N/A GO:0005765 ... Q68CP4 38918376
    900664 8vkt:A (1.398) BS01 ZN 3.5.1.18 GO:0008270 ... A0A1S8KJG1 38740150
    900665 8vkt:A (1.398) BS02 ZN 3.5.1.18 GO:0008270 ... A0A1S8KJG1 38740150
    900666 8vku:A (3.5) BS01 A1AC1 N/A GO:0000153 ... P55072 38833472
    900667 8vku:B (3.5) BS01 A1AC1 N/A GO:0000153 ... P55072 38833472
    900668 8vku:C (3.5) BS01 A1AC1 N/A GO:0000153 ... P55072 38833472
    900669 8vku:D (3.5) BS01 A1AC1 N/A GO:0000153 ... P55072 38833472
    900670 8vku:E (3.5) BS01 A1AC1 N/A GO:0000153 ... P55072 38833472
    900671 8vku:F (3.5) BS01 A1AC1 N/A GO:0000153 ... P55072 38833472
    900672 8vkv:0 (3.6) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    900673 8vkv:1 (3.6) BS01 rna N/A GO:0002181 ... P61175 N/A
    900674 8vkv:2 (3.6) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    900675 8vkv:3 (3.6) BS01 rna N/A GO:0000027 ... P60624 N/A
    900676 8vkv:4 (3.6) BS01 rna N/A GO:0000027 ... P68919 N/A
    900677 8vkv:9 (3.6) BS01 rna N/A GO:0002181 ... P0A7J3 N/A
    900678 8vkv:AA (3.6) BS01 dna N/A GO:0000345 ... P0A8V2 N/A
    900679 8vkv:AA (3.6) BS02 dna N/A GO:0000345 ... P0A8V2 N/A
    900680 8vkv:AA (3.6) BS03 rna N/A GO:0000345 ... P0A8V2 N/A
    900681 8vkv:AB (3.6) BS01 dna N/A GO:0006354 ... P0AFG0 N/A
    900682 8vkv:AE (3.6) BS01 dna N/A GO:0000287 ... P0A8T7 N/A
    900683 8vkv:AE (3.6) BS02 dna N/A GO:0000287 ... P0A8T7 N/A
    900684 8vkv:AE (3.6) BS03 rna N/A GO:0000287 ... P0A8T7 N/A
    900685 8vkv:AE (3.6) BS04 MG N/A GO:0000287 ... P0A8T7 N/A
    900686 8vkv:AE (3.6) BS05 ZN N/A GO:0000287 ... P0A8T7 N/A
    900687 8vkv:AE (3.6) BS06 ZN N/A GO:0000287 ... P0A8T7 N/A
    900688 8vkv:C (3.6) BS01 rna N/A GO:0002181 ... P0A7T7 N/A
    900689 8vkv:E (3.6) BS01 rna N/A GO:0000028 ... P0A7U7 N/A
    900690 8vkv:F (3.6) BS01 rna N/A GO:0000028 ... P68679 N/A
    900691 8vkv:G (3.6) BS01 rna N/A GO:0000028 ... P0A7V0 N/A
    900692 8vkv:I (3.6) BS01 rna N/A GO:0000028 ... P0A7V3 N/A
    900693 8vkv:I (3.6) BS02 rna N/A GO:0000028 ... P0A7V3 N/A
    900694 8vkv:J (3.6) BS01 rna N/A GO:0000028 ... P0A7V8 N/A
    900695 8vkv:K (3.6) BS01 rna N/A GO:0000028 ... P0A7W1 N/A
    900696 8vkv:K (3.6) BS02 rna N/A GO:0000028 ... P0A7W1 N/A
    900697 8vkv:L (3.6) BS01 rna N/A GO:0002181 ... P02358 N/A
    900698 8vkv:M (3.6) BS01 rna N/A GO:0000028 ... P02359 N/A
    900699 8vkv:M (3.6) BS02 rna N/A GO:0000028 ... P02359 N/A
    900700 8vkv:N (3.6) BS01 rna N/A GO:0000028 ... P0A7W7 N/A
    900701 8vkv:O (3.6) BS01 rna N/A GO:0002181 ... P0A7X3 N/A
    900702 8vkv:P (3.6) BS01 rna N/A GO:0000049 ... P0A7R5 N/A
    900703 8vkv:Q (3.6) BS01 rna N/A GO:0002181 ... P0A7R9 N/A
    900704 8vkv:R (3.6) BS01 rna N/A GO:0000049 ... P0A7S3 N/A
    900705 8vkv:S (3.6) BS01 rna N/A GO:0000028 ... P0AG59 N/A
    900706 8vkv:T (3.6) BS01 rna N/A GO:0000028 ... P0ADZ4 N/A
    900707 8vkv:T (3.6) BS02 rna N/A GO:0000028 ... P0ADZ4 N/A
    900708 8vkv:U (3.6) BS01 rna N/A GO:0000028 ... P0A7T3 N/A
    900709 8vkv:V (3.6) BS01 rna N/A GO:0000028 ... P0AG63 N/A
    900710 8vkv:W (3.6) BS01 rna N/A GO:0002181 ... P0A7U3 N/A
    900711 8vkv:X (3.6) BS01 rna N/A GO:0000049 ... P0A7S9 N/A
    900712 8vkv:X (3.6) BS02 rna N/A GO:0000049 ... P0A7S9 N/A
    900713 8vkv:Y (3.6) BS01 rna N/A GO:0000027 ... P0A7J7 N/A
    900714 8vkv:b (3.6) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    900715 8vkv:b (3.6) BS02 rna N/A GO:0000027 ... P0A7L8 N/A
    900716 8vkv:c (3.6) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    900717 8vkv:e (3.6) BS01 rna N/A GO:0000027 ... P0A7M6 N/A
    900718 8vkv:f (3.6) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    900719 8vkv:f (3.6) BS02 rna N/A GO:0000027 ... P0AG51 N/A
    900720 8vkv:g (3.6) BS01 rna N/A GO:0002181 ... P0A7M9 N/A
    900721 8vkv:h (3.6) BS01 rna N/A GO:0000027 ... P60422 N/A
    900722 8vkv:i (3.6) BS01 rna N/A GO:0000027 ... P0A7N4 N/A
    900723 8vkv:j (3.6) BS01 rna N/A GO:0000027 ... P60438 N/A
    900724 8vkv:k (3.6) BS01 rna N/A GO:0000027 ... P0A7N9 N/A
    900725 8vkv:l (3.6) BS01 rna N/A GO:0001070 ... P60723 N/A
    900726 8vkv:m (3.6) BS01 rna N/A GO:0002181 ... P0A7P5 N/A
    900727 8vkv:n (3.6) BS01 rna N/A GO:0000027 ... P62399 N/A
    900728 8vkv:n (3.6) BS02 rna N/A GO:0000027 ... P62399 N/A
    900729 8vkv:n (3.6) BS03 rna N/A GO:0000027 ... P62399 N/A
    900730 8vkv:o (3.6) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    900731 8vkv:p (3.6) BS01 rna N/A GO:0000027 ... P0AG55 N/A
    900732 8vkv:q (3.6) BS01 rna N/A GO:0002181 ... P0A7Q6 N/A
    900733 8vkv:r (3.6) BS01 rna N/A GO:0002181 ... P0A7R1 N/A
    900734 8vkv:s (3.6) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    900735 8vkv:t (3.6) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    900736 8vkv:t (3.6) BS02 rna N/A GO:0002181 ... P0ADY3 N/A
    900737 8vkv:u (3.6) BS01 rna N/A GO:0002181 ... P02413 N/A
    900738 8vkv:v (3.6) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    900739 8vkv:v (3.6) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    900740 8vkv:w (3.6) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    900741 8vkv:x (3.6) BS01 rna N/A GO:0002181 ... P0C018 N/A
    900742 8vkv:x (3.6) BS02 rna N/A GO:0002181 ... P0C018 N/A
    900743 8vkv:y (3.6) BS01 rna N/A GO:0000027 ... P0A7K6 N/A
    900744 8vkv:z (3.6) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    900745 8vkw:2 (3.44) BS01 rna N/A GO:0003735 ... A0QSG7 39913204
    900746 8vkw:2 (3.44) BS02 rna N/A GO:0003735 ... A0QSG7 39913204
    900747 8vkw:4 (3.44) BS01 rna N/A GO:0003924 ... A0QVY1 39913204
    900748 8vkw:C (3.44) BS01 rna N/A GO:0002181 ... A0QSD4 39913204
    900749 8vkw:D (3.44) BS01 rna N/A GO:0003735 ... A0QSD1 39913204
    900750 8vkw:E (3.44) BS01 rna N/A GO:0003735 ... A0QSD2 39913204
    900751 8vkw:F (3.44) BS01 rna N/A GO:0000049 ... A0QSG1 39913204
    900752 8vkw:F (3.44) BS02 rna N/A GO:0000049 ... A0QSG1 39913204
    900753 8vkw:G (3.44) BS01 rna N/A GO:0002181 ... A0QSG4 39913204
    900754 8vkw:H (3.44) BS01 rna N/A GO:0003735 ... A0R7F6 39913204
    900755 8vkw:J (3.44) BS01 rna N/A GO:0003735 ... A0QS45 39913204
    900756 8vkw:K (3.44) BS01 rna N/A GO:0003729 ... A0QSP8 39913204
    900757 8vkw:L (3.44) BS01 rna N/A GO:0003735 ... A0QSF9 39913204
    900758 8vkw:M (3.44) BS01 rna N/A GO:0003735 ... A0QSG8 39913204
    900759 8vkw:N (3.44) BS01 rna N/A GO:0003735 ... A0QSD8 39913204
    900760 8vkw:O (3.44) BS01 rna N/A GO:0003735 ... A0QSL9 39913204
    900761 8vkw:P (3.44) BS01 rna N/A GO:0003735 ... A0QSG5 39913204
    900762 8vkw:P (3.44) BS02 rna N/A GO:0003735 ... A0QSG5 39913204
    900763 8vkw:Q (3.44) BS01 rna N/A GO:0003735 ... A0QV42 39913204
    900764 8vkw:R (3.44) BS01 rna N/A GO:0000027 ... A0QYU6 39913204
    900765 8vkw:S (3.44) BS01 rna N/A GO:0003723 ... A0R151 39913204
    900766 8vkw:T (3.44) BS01 rna N/A GO:0003735 ... A0QSD6 39913204
    900767 8vkw:U (3.44) BS01 rna N/A GO:0003735 ... A0QSD3 39913204
    900768 8vkw:V (3.44) BS01 rna N/A GO:0003723 ... A0QSG0 39913204
    900769 8vkw:W (3.44) BS01 rna N/A GO:0003723 ... A0R3D2 39913204
    900770 8vkw:X (3.44) BS01 rna N/A GO:0003735 ... A0R150 39913204
    900771 8vkw:X (3.44) BS02 rna N/A GO:0003735 ... A0R150 39913204
    900772 8vkw:Y (3.44) BS01 rna N/A GO:0003735 ... A0QV03 39913204
    900773 8vkw:Z (3.44) BS01 rna N/A GO:0003735 ... A0QSD9 39913204
    900774 8vkw:b (3.44) BS01 rna N/A GO:0003735 ... A0R3I9 39913204
    900775 8vkw:c (3.44) BS01 rna N/A GO:0003735 ... A0QS39 39913204
    900776 8vkw:d (3.44) BS01 rna N/A GO:0003735 ... A0R7K0 39913204
    900777 8vkw:e (3.44) BS01 rna N/A GO:0003735 ... A0QYU7 39913204
    900778 8vkw:f (3.44) BS01 rna N/A GO:0003735 ... A0QSL4 39913204
    900779 8vkw:g (3.44) BS01 rna N/A GO:0003735 ... A0R215 39913204
    900780 8vkz:A (2.133) BS01 peptide ? N/A P04150 38516584
    900781 8vkz:A (2.133) BS02 A1ACE ? N/A P04150 38516584
    900782 8vkz:B (2.133) BS01 peptide ? N/A P04150 38516584
    900783 8vkz:B (2.133) BS02 A1ACE ? N/A P04150 38516584
    900784 8vl0:A (1.837) BS01 LVC ? GO:0004497 ... Q2IU02 39911918
    900785 8vl0:A (1.837) BS02 HEM ? GO:0004497 ... Q2IU02 39911918
    900786 8vl1:0 (5.3) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    900787 8vl1:1 (5.3) BS01 rna N/A GO:0002181 ... P61175 N/A
    900788 8vl1:2 (5.3) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    900789 8vl1:3 (5.3) BS01 rna N/A GO:0000027 ... P60624 N/A
    900790 8vl1:4 (5.3) BS01 rna N/A GO:0000027 ... P68919 N/A
    900791 8vl1:9 (5.3) BS01 rna N/A GO:0002181 ... P0A7J3 N/A
    900792 8vl1:AA (5.3) BS01 dna N/A GO:0000345 ... P0A8V2 N/A
    900793 8vl1:AA (5.3) BS02 dna N/A GO:0000345 ... P0A8V2 N/A
    900794 8vl1:AA (5.3) BS03 rna N/A GO:0000345 ... P0A8V2 N/A
    900795 8vl1:AB (5.3) BS01 dna N/A GO:0006354 ... P0AFG0 N/A
    900796 8vl1:AE (5.3) BS01 dna N/A GO:0000287 ... P0A8T7 N/A
    900797 8vl1:AE (5.3) BS02 dna N/A GO:0000287 ... P0A8T7 N/A
    900798 8vl1:AE (5.3) BS03 rna N/A GO:0000287 ... P0A8T7 N/A
    900799 8vl1:AE (5.3) BS04 MG N/A GO:0000287 ... P0A8T7 N/A
    900800 8vl1:AE (5.3) BS05 ZN N/A GO:0000287 ... P0A8T7 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).