SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    900801 8vl1:AE (5.3) BS06 ZN N/A GO:0000287 ... P0A8T7 N/A
    900802 8vl1:C (5.3) BS01 rna N/A GO:0002181 ... P0A7T7 N/A
    900803 8vl1:E (5.3) BS01 rna N/A GO:0000028 ... P0A7U7 N/A
    900804 8vl1:F (5.3) BS01 rna N/A GO:0000028 ... P68679 N/A
    900805 8vl1:G (5.3) BS01 rna N/A GO:0000028 ... P0A7V0 N/A
    900806 8vl1:I (5.3) BS01 rna N/A GO:0000028 ... P0A7V3 N/A
    900807 8vl1:J (5.3) BS01 rna N/A GO:0000028 ... P0A7V8 N/A
    900808 8vl1:K (5.3) BS01 rna N/A GO:0000028 ... P0A7W1 N/A
    900809 8vl1:K (5.3) BS02 rna N/A GO:0000028 ... P0A7W1 N/A
    900810 8vl1:L (5.3) BS01 rna N/A GO:0002181 ... P02358 N/A
    900811 8vl1:M (5.3) BS01 rna N/A GO:0000028 ... P02359 N/A
    900812 8vl1:M (5.3) BS02 rna N/A GO:0000028 ... P02359 N/A
    900813 8vl1:N (5.3) BS01 rna N/A GO:0000028 ... P0A7W7 N/A
    900814 8vl1:O (5.3) BS01 rna N/A GO:0002181 ... P0A7X3 N/A
    900815 8vl1:P (5.3) BS01 rna N/A GO:0000049 ... P0A7R5 N/A
    900816 8vl1:Q (5.3) BS01 rna N/A GO:0002181 ... P0A7R9 N/A
    900817 8vl1:R (5.3) BS01 rna N/A GO:0000049 ... P0A7S3 N/A
    900818 8vl1:S (5.3) BS01 rna N/A GO:0000028 ... P0AG59 N/A
    900819 8vl1:T (5.3) BS01 rna N/A GO:0000028 ... P0ADZ4 N/A
    900820 8vl1:T (5.3) BS02 rna N/A GO:0000028 ... P0ADZ4 N/A
    900821 8vl1:U (5.3) BS01 rna N/A GO:0000028 ... P0A7T3 N/A
    900822 8vl1:V (5.3) BS01 rna N/A GO:0000028 ... P0AG63 N/A
    900823 8vl1:W (5.3) BS01 rna N/A GO:0002181 ... P0A7U3 N/A
    900824 8vl1:X (5.3) BS01 rna N/A GO:0000049 ... P0A7S9 N/A
    900825 8vl1:X (5.3) BS02 rna N/A GO:0000049 ... P0A7S9 N/A
    900826 8vl1:Y (5.3) BS01 rna N/A GO:0000027 ... P0A7J7 N/A
    900827 8vl1:b (5.3) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    900828 8vl1:b (5.3) BS02 rna N/A GO:0000027 ... P0A7L8 N/A
    900829 8vl1:c (5.3) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    900830 8vl1:e (5.3) BS01 rna N/A GO:0000027 ... P0A7M6 N/A
    900831 8vl1:f (5.3) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    900832 8vl1:f (5.3) BS02 rna N/A GO:0000027 ... P0AG51 N/A
    900833 8vl1:g (5.3) BS01 rna N/A GO:0002181 ... P0A7M9 N/A
    900834 8vl1:h (5.3) BS01 rna N/A GO:0000027 ... P60422 N/A
    900835 8vl1:i (5.3) BS01 rna N/A GO:0000027 ... P0A7N4 N/A
    900836 8vl1:j (5.3) BS01 rna N/A GO:0000027 ... P60438 N/A
    900837 8vl1:k (5.3) BS01 rna N/A GO:0000027 ... P0A7N9 N/A
    900838 8vl1:l (5.3) BS01 rna N/A GO:0001070 ... P60723 N/A
    900839 8vl1:m (5.3) BS01 rna N/A GO:0002181 ... P0A7P5 N/A
    900840 8vl1:n (5.3) BS01 rna N/A GO:0000027 ... P62399 N/A
    900841 8vl1:n (5.3) BS02 rna N/A GO:0000027 ... P62399 N/A
    900842 8vl1:n (5.3) BS03 rna N/A GO:0000027 ... P62399 N/A
    900843 8vl1:o (5.3) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    900844 8vl1:p (5.3) BS01 rna N/A GO:0000027 ... P0AG55 N/A
    900845 8vl1:q (5.3) BS01 rna N/A GO:0002181 ... P0A7Q6 N/A
    900846 8vl1:r (5.3) BS01 rna N/A GO:0002181 ... P0A7R1 N/A
    900847 8vl1:s (5.3) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    900848 8vl1:t (5.3) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    900849 8vl1:t (5.3) BS02 rna N/A GO:0002181 ... P0ADY3 N/A
    900850 8vl1:u (5.3) BS01 rna N/A GO:0002181 ... P02413 N/A
    900851 8vl1:v (5.3) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    900852 8vl1:v (5.3) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    900853 8vl1:w (5.3) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    900854 8vl1:x (5.3) BS01 rna N/A GO:0002181 ... P0C018 N/A
    900855 8vl1:x (5.3) BS02 rna N/A GO:0002181 ... P0C018 N/A
    900856 8vl1:y (5.3) BS01 rna N/A GO:0000027 ... P0A7K6 N/A
    900857 8vl1:z (5.3) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    900858 8vl7:A (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    900859 8vl7:A (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    900860 8vl7:A (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    900861 8vl7:B (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    900862 8vl7:B (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    900863 8vl7:B (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    900864 8vl7:C (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    900865 8vl7:C (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    900866 8vl7:C (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    900867 8vl7:D (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    900868 8vl7:D (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    900869 8vl7:D (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    900870 8vl7:E (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    900871 8vl7:E (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    900872 8vl7:E (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    900873 8vl7:F (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    900874 8vl7:F (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    900875 8vl7:F (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    900876 8vl7:G (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    900877 8vl7:G (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    900878 8vl7:G (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    900879 8vl7:H (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    900880 8vl7:H (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    900881 8vl7:H (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    900882 8vl8:A (2.5) BS01 SER ? GO:0006935 ... Q8ZJY4 N/A
    900883 8vl8:B (2.5) BS01 SER ? GO:0006935 ... Q8ZJY4 N/A
    900884 8vl8:C (2.5) BS01 SER ? GO:0006935 ... Q8ZJY4 N/A
    900885 8vl8:D (2.5) BS01 SER ? GO:0006935 ... Q8ZJY4 N/A
    900886 8vl8:E (2.5) BS01 SER ? GO:0006935 ... Q8ZJY4 N/A
    900887 8vl9:A (2.5) BS01 A1ACI ? N/A P40337 40555806
    900888 8vl9:D (2.5) BS01 A1ACI 1.13.11.20 GO:0005506 ... Q16878 40555806
    900889 8vl9:D (2.5) BS02 FE2 1.13.11.20 GO:0005506 ... Q16878 40555806
    900890 8vlb:A (2.9) BS01 3JF ? N/A P40337 40555806
    900891 8vlb:D (2.9) BS01 3JF 1.13.11.20 GO:0005506 ... Q16878 40555806
    900892 8vlb:D (2.9) BS02 FE2 1.13.11.20 GO:0005506 ... Q16878 40555806
    900893 8vld:A (1.92) BS01 peptide N/A N/A Q9NR48 40044670
    900894 8vld:A (1.92) BS02 ZN N/A N/A Q9NR48 40044670
    900895 8vld:A (1.92) BS03 ZN N/A N/A Q9NR48 40044670
    900896 8vld:B (1.92) BS01 peptide N/A N/A Q9NR48 40044670
    900897 8vld:B (1.92) BS02 ZN N/A N/A Q9NR48 40044670
    900898 8vld:B (1.92) BS03 ZN N/A N/A Q9NR48 40044670
    900899 8vle:A (3.3) BS01 NDP N/A GO:0001649 ... P49327 39979457
    900900 8vle:A (3.3) BS02 NDP N/A GO:0001649 ... P49327 39979457
    900901 8vle:B (3.3) BS01 NDP N/A GO:0001649 ... P49327 39979457
    900902 8vle:B (3.3) BS02 NDP N/A GO:0001649 ... P49327 39979457
    900903 8vlf:A (1.34) BS01 peptide N/A N/A Q9NR48 40044670
    900904 8vlf:A (1.34) BS02 ZN N/A N/A Q9NR48 40044670
    900905 8vlf:A (1.34) BS03 ZN N/A N/A Q9NR48 40044670
    900906 8vlf:B (1.34) BS01 peptide N/A N/A Q9NR48 40044670
    900907 8vlf:B (1.34) BS02 ZN N/A N/A Q9NR48 40044670
    900908 8vlf:B (1.34) BS03 ZN N/A N/A Q9NR48 40044670
    900909 8vlg:A (3.15) BS01 ACO N/A GO:0005765 ... Q68CP4 38918376
    900910 8vlg:A (3.15) BS02 A1ACY N/A GO:0005765 ... Q68CP4 38918376
    900911 8vlg:B (3.15) BS01 ACO N/A GO:0005765 ... Q68CP4 38918376
    900912 8vlg:B (3.15) BS02 A1ACY N/A GO:0005765 ... Q68CP4 38918376
    900913 8vlh:A (2.403) BS01 ZN N/A GO:0003682 ... Q9NR48 40044670
    900914 8vlh:A (2.403) BS02 ZN N/A GO:0003682 ... Q9NR48 40044670
    900915 8vlh:B (2.403) BS01 ZN N/A GO:0003682 ... Q9NR48 40044670
    900916 8vlh:B (2.403) BS02 ZN N/A GO:0003682 ... Q9NR48 40044670
    900917 8vli:A (3.2) BS01 COA N/A GO:0005765 ... Q68CP4 38918376
    900918 8vli:A (3.2) BS02 A1AC0 N/A GO:0005765 ... Q68CP4 38918376
    900919 8vli:B (3.2) BS01 COA N/A GO:0005765 ... Q68CP4 38918376
    900920 8vli:B (3.2) BS02 A1AC0 N/A GO:0005765 ... Q68CP4 38918376
    900921 8vlj:A (1.39) BS01 ZN N/A GO:0004131 ... Q12178 39146405
    900922 8vlj:B (1.39) BS01 ZN N/A GO:0004131 ... Q12178 39146405
    900923 8vlk:A (1.76) BS01 ZN N/A GO:0004131 ... Q12178 39146405
    900924 8vlk:B (1.76) BS01 ZN N/A GO:0004131 ... Q12178 39146405
    900925 8vlk:C (1.76) BS01 ZN N/A GO:0004131 ... Q12178 39146405
    900926 8vlk:D (1.76) BS01 ZN N/A GO:0004131 ... Q12178 39146405
    900927 8vll:A (1.67) BS01 ZN N/A GO:0004131 ... Q12178 39146405
    900928 8vll:B (1.67) BS01 ZN N/A GO:0004131 ... Q12178 39146405
    900929 8vlm:A (2.67) BS01 ZN N/A GO:0004131 ... Q12178 39146405
    900930 8vlm:B (2.67) BS01 ZN N/A GO:0004131 ... Q12178 39146405
    900931 8vlm:C (2.67) BS01 ZN N/A GO:0004131 ... Q12178 39146405
    900932 8vlm:D (2.67) BS01 ZN N/A GO:0004131 ... Q12178 39146405
    900933 8vlo:A (3.3) BS01 NDP N/A GO:0001649 ... P49327 39979457
    900934 8vlo:A (3.3) BS02 NDP N/A GO:0001649 ... P49327 39979457
    900935 8vlo:B (3.3) BS01 NDP N/A GO:0001649 ... P49327 39979457
    900936 8vlo:B (3.3) BS02 NDP N/A GO:0001649 ... P49327 39979457
    900937 8vlp:A (3.2) BS01 NDP N/A GO:0001649 ... P49327 39979457
    900938 8vlp:A (3.2) BS02 NDP N/A GO:0001649 ... P49327 39979457
    900939 8vlp:B (3.2) BS01 NDP N/A GO:0001649 ... P49327 39979457
    900940 8vlp:B (3.2) BS02 NDP N/A GO:0001649 ... P49327 39979457
    900941 8vlq:A (2.07) BS01 ZKE 1.1.1.88 GO:0004420 ... P13702 38327055
    900942 8vlq:A (2.07) BS02 COA 1.1.1.88 GO:0004420 ... P13702 38327055
    900943 8vlq:A (2.07) BS03 A1AFY 1.1.1.88 GO:0004420 ... P13702 38327055
    900944 8vlq:A (2.07) BS04 NAD 1.1.1.88 GO:0004420 ... P13702 38327055
    900945 8vlq:A (2.07) BS05 NAI 1.1.1.88 GO:0004420 ... P13702 38327055
    900946 8vlq:B (2.07) BS01 COA 1.1.1.88 GO:0004420 ... P13702 38327055
    900947 8vlq:B (2.07) BS02 NAD 1.1.1.88 GO:0004420 ... P13702 38327055
    900948 8vlq:B (2.07) BS03 NAI 1.1.1.88 GO:0004420 ... P13702 38327055
    900949 8vlq:B (2.07) BS04 MEV 1.1.1.88 GO:0004420 ... P13702 38327055
    900950 8vlr:A (2.6) BS01 dna N/A GO:0000786 ... P68431 N/A
    900951 8vlr:A (2.6) BS02 dna N/A GO:0000786 ... P68431 N/A
    900952 8vlr:B (2.6) BS01 dna N/A GO:0003677 ... P62805 N/A
    900953 8vlr:B (2.6) BS02 dna N/A GO:0003677 ... P62805 N/A
    900954 8vlr:C (2.6) BS01 dna N/A GO:0000786 ... P04908 N/A
    900955 8vlr:C (2.6) BS02 dna N/A GO:0000786 ... P04908 N/A
    900956 8vlr:D (2.6) BS01 dna N/A GO:0000786 ... Q96A08 N/A
    900957 8vlr:D (2.6) BS02 dna N/A GO:0000786 ... Q96A08 N/A
    900958 8vlr:E (2.6) BS01 dna N/A GO:0000786 ... P68431 N/A
    900959 8vlr:E (2.6) BS02 dna N/A GO:0000786 ... P68431 N/A
    900960 8vlr:F (2.6) BS01 dna N/A GO:0003677 ... P62805 N/A
    900961 8vlr:F (2.6) BS02 dna N/A GO:0003677 ... P62805 N/A
    900962 8vlr:G (2.6) BS01 dna N/A GO:0000786 ... P04908 N/A
    900963 8vlr:G (2.6) BS02 dna N/A GO:0000786 ... P04908 N/A
    900964 8vlr:H (2.6) BS01 dna N/A GO:0000786 ... Q96A08 N/A
    900965 8vlr:H (2.6) BS02 dna N/A GO:0000786 ... Q96A08 N/A
    900966 8vls:A (2.9) BS01 A1AC1 N/A GO:0000153 ... P55072 38833472
    900967 8vls:B (2.9) BS01 A1AC1 N/A GO:0000153 ... P55072 38833472
    900968 8vls:C (2.9) BS01 A1AC1 N/A GO:0000153 ... P55072 38833472
    900969 8vls:D (2.9) BS01 A1AC1 N/A GO:0000153 ... P55072 38833472
    900970 8vls:E (2.9) BS01 A1AC1 N/A GO:0000153 ... P55072 38833472
    900971 8vls:F (2.9) BS01 A1AC1 N/A GO:0000153 ... P55072 38833472
    900972 8vls:G (2.9) BS01 A1AC1 N/A GO:0000153 ... P55072 38833472
    900973 8vls:H (2.9) BS01 A1AC1 N/A GO:0000153 ... P55072 38833472
    900974 8vls:I (2.9) BS01 A1AC1 N/A GO:0000153 ... P55072 38833472
    900975 8vls:J (2.9) BS01 A1AC1 N/A GO:0000153 ... P55072 38833472
    900976 8vls:K (2.9) BS01 A1AC1 N/A GO:0000153 ... P55072 38833472
    900977 8vls:L (2.9) BS01 A1AC1 N/A GO:0000153 ... P55072 38833472
    900978 8vlt:L (1.84) BS01 MAN N/A N/A N/A 39292703
    900979 8vlu:A (3.12) BS01 COA N/A GO:0005765 ... Q68CP4 38918376
    900980 8vlu:B (3.12) BS01 COA N/A GO:0005765 ... Q68CP4 38918376
    900981 8vlx:A (2.6) BS01 A1ACS ? GO:0000132 ... P42858 N/A
    900982 8vlx:B (2.6) BS01 A1ACS ? GO:0005515 ... P23610 N/A
    900983 8vm0:A (3.3) BS01 NDP N/A GO:0001649 ... P49327 39979457
    900984 8vm0:A (3.3) BS02 NDP N/A GO:0001649 ... P49327 39979457
    900985 8vm0:B (3.3) BS01 NDP N/A GO:0001649 ... P49327 39979457
    900986 8vm0:B (3.3) BS02 NDP N/A GO:0001649 ... P49327 39979457
    900987 8vm2:A (1.74) BS01 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    900988 8vm2:A (1.74) BS02 MG 3.6.5.2 GO:0000139 ... P01111 38640594
    900989 8vm2:A (1.74) BS03 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    900990 8vm2:A (1.74) BS04 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    900991 8vm2:B (1.74) BS01 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    900992 8vm2:B (1.74) BS02 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    900993 8vm2:B (1.74) BS03 MG 3.6.5.2 GO:0000139 ... P01111 38640594
    900994 8vm2:B (1.74) BS04 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    900995 8vm2:C (1.74) BS01 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    900996 8vm2:C (1.74) BS02 MG 3.6.5.2 GO:0000139 ... P01111 38640594
    900997 8vm5:A (3.3) BS01 NDP N/A GO:0001649 ... P49327 39979457
    900998 8vm5:A (3.3) BS02 NDP N/A GO:0001649 ... P49327 39979457
    900999 8vm5:B (3.3) BS01 NDP N/A GO:0001649 ... P49327 39979457
    901000 8vm5:B (3.3) BS02 NDP N/A GO:0001649 ... P49327 39979457

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).