SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    901001 8vm6:A (3.5) BS01 NDP N/A GO:0001649 ... P49327 39979457
    901002 8vm6:A (3.5) BS02 NDP N/A GO:0001649 ... P49327 39979457
    901003 8vm6:B (3.5) BS01 NDP N/A GO:0001649 ... P49327 39979457
    901004 8vm6:B (3.5) BS02 NDP N/A GO:0001649 ... P49327 39979457
    901005 8vm7:A (3.3) BS01 NDP N/A GO:0001649 ... P49327 39979457
    901006 8vm7:A (3.3) BS02 NDP N/A GO:0001649 ... P49327 39979457
    901007 8vm7:B (3.3) BS01 NDP N/A GO:0001649 ... P49327 39979457
    901008 8vm7:B (3.3) BS02 NDP N/A GO:0001649 ... P49327 39979457
    901009 8vm8:H (1.54) BS01 rna N/A N/A N/A 39036953
    901010 8vm8:L (1.54) BS01 rna N/A N/A N/A 39036953
    901011 8vm9:A (2.2) BS01 rna N/A N/A N/A 39036953
    901012 8vm9:B (2.2) BS01 rna N/A N/A N/A 39036953
    901013 8vm9:B (2.2) BS02 rna N/A N/A N/A 39036953
    901014 8vm9:H (2.2) BS01 rna N/A N/A N/A 39036953
    901015 8vm9:L (2.2) BS01 rna N/A N/A N/A 39036953
    901016 8vm9:L (2.2) BS02 rna N/A N/A N/A 39036953
    901017 8vma:A (2.54) BS01 rna N/A N/A N/A 39036953
    901018 8vma:B (2.54) BS01 rna N/A N/A N/A 39036953
    901019 8vma:B (2.54) BS02 rna N/A N/A N/A 39036953
    901020 8vma:H (2.54) BS01 rna N/A N/A N/A 39036953
    901021 8vma:L (2.54) BS01 rna N/A N/A N/A 39036953
    901022 8vma:L (2.54) BS02 rna N/A N/A N/A 39036953
    901023 8vmb:H (2.97) BS01 rna N/A N/A N/A 39036953
    901024 8vmb:L (2.97) BS01 rna N/A N/A N/A 39036953
    901025 8vmc:A (3.3) BS01 NDP N/A GO:0001649 ... P49327 39979457
    901026 8vmc:A (3.3) BS02 NDP N/A GO:0001649 ... P49327 39979457
    901027 8vmc:B (3.3) BS01 NDP N/A GO:0001649 ... P49327 39979457
    901028 8vmc:B (3.3) BS02 NDP N/A GO:0001649 ... P49327 39979457
    901029 8vmd:A (3.46) BS01 NAP N/A GO:0001649 ... P49327 39979457
    901030 8vmd:B (3.46) BS01 NAP N/A GO:0001649 ... P49327 39979457
    901031 8vme:A (2.3) BS01 peptide N/A GO:0004672 ... Q9WV60 39226374
    901032 8vme:A (2.3) BS02 peptide N/A GO:0004672 ... Q9WV60 39226374
    901033 8vme:A (2.3) BS03 ADP N/A GO:0004672 ... Q9WV60 39226374
    901034 8vme:A (2.3) BS04 MG N/A GO:0004672 ... Q9WV60 39226374
    901035 8vmf:A (2.5) BS01 peptide N/A GO:0004672 ... Q9WV60 39226374
    901036 8vmf:A (2.5) BS02 peptide N/A GO:0004672 ... Q9WV60 39226374
    901037 8vmf:A (2.5) BS03 MG N/A GO:0004672 ... Q9WV60 39226374
    901038 8vmf:A (2.5) BS04 AF3 N/A GO:0004672 ... Q9WV60 39226374
    901039 8vmf:A (2.5) BS05 ADP N/A GO:0004672 ... Q9WV60 39226374
    901040 8vmg:A (2.45) BS01 ADP N/A GO:0004672 ... Q9WV60 39226374
    901041 8vmg:A (2.45) BS02 MG N/A GO:0004672 ... Q9WV60 39226374
    901042 8vmh:A (2.46) BS01 A1ACT N/A GO:0000077 ... P47811 N/A
    901043 8vmi:A (3.1) BS01 peptide N/A GO:0000122 ... O75530 39774834
    901044 8vmi:C (3.1) BS01 peptide N/A GO:0000122 ... Q15910 39774834
    901045 8vmi:C (3.1) BS02 ZN N/A GO:0000122 ... Q15910 39774834
    901046 8vmi:C (3.1) BS03 ZN N/A GO:0000122 ... Q15910 39774834
    901047 8vmi:C (3.1) BS04 ZN N/A GO:0000122 ... Q15910 39774834
    901048 8vmi:C (3.1) BS05 ZN N/A GO:0000122 ... Q15910 39774834
    901049 8vmi:C (3.1) BS06 ZN N/A GO:0000122 ... Q15910 39774834
    901050 8vmi:C (3.1) BS07 ZN N/A GO:0000122 ... Q15910 39774834
    901051 8vmi:P (3.1) BS01 peptide N/A N/A Q6ZN18 39774834
    901052 8vmi:T (3.1) BS01 peptide N/A GO:0000122 ... Q15022 39774834
    901053 8vmj:I (3.1) BS01 dna N/A GO:0000786 ... Q71DI3 39774834
    901054 8vmj:I (3.1) BS02 dna N/A GO:0000786 ... Q71DI3 39774834
    901055 8vmj:J (3.1) BS01 dna N/A GO:0000781 ... P62805 39774834
    901056 8vmj:J (3.1) BS02 dna N/A GO:0000781 ... P62805 39774834
    901057 8vmj:K (3.1) BS01 dna N/A GO:0000786 ... Q6AZJ8 39774834
    901058 8vmj:K (3.1) BS02 dna N/A GO:0000786 ... Q6AZJ8 39774834
    901059 8vmj:M (3.1) BS01 dna N/A GO:0000786 ... A0A8J1LZU9 39774834
    901060 8vmj:M (3.1) BS02 dna N/A GO:0000786 ... A0A8J1LZU9 39774834
    901061 8vmj:O (3.1) BS01 dna N/A GO:0000786 ... Q71DI3 39774834
    901062 8vmj:O (3.1) BS02 dna N/A GO:0000786 ... Q71DI3 39774834
    901063 8vmj:Q (3.1) BS01 dna N/A GO:0000781 ... P62805 39774834
    901064 8vmj:Q (3.1) BS02 dna N/A GO:0000781 ... P62805 39774834
    901065 8vmj:R (3.1) BS01 dna N/A GO:0000786 ... Q6AZJ8 39774834
    901066 8vmj:S (3.1) BS01 dna N/A GO:0000786 ... A0A8J1LZU9 39774834
    901067 8vmj:S (3.1) BS02 dna N/A GO:0000786 ... A0A8J1LZU9 39774834
    901068 8vmk:A (1.56) BS01 HPP N/A N/A A0ACD6BA76 41737883
    901069 8vmk:A (1.56) BS02 HEM N/A N/A A0ACD6BA76 41737883
    901070 8vmk:B (1.56) BS01 HPP N/A N/A A0ACD6BA76 41737883
    901071 8vmk:B (1.56) BS02 HEM N/A N/A A0ACD6BA76 41737883
    901072 8vml:C (3.5) BS01 peptide N/A GO:0000122 ... Q15910 39774834
    901073 8vmm:A (2.4) BS01 A1ACP N/A GO:0000077 ... P47811 N/A
    901074 8vmn:I (3.5) BS01 dna N/A GO:0000786 ... Q71DI3 39774834
    901075 8vmn:I (3.5) BS02 dna N/A GO:0000786 ... Q71DI3 39774834
    901076 8vmn:J (3.5) BS01 dna N/A GO:0000781 ... P62805 39774834
    901077 8vmn:J (3.5) BS02 dna N/A GO:0000781 ... P62805 39774834
    901078 8vmn:K (3.5) BS01 dna N/A GO:0000786 ... Q6AZJ8 39774834
    901079 8vmn:K (3.5) BS02 dna N/A GO:0000786 ... Q6AZJ8 39774834
    901080 8vmn:M (3.5) BS01 dna N/A GO:0000786 ... A0A8J1LZU9 39774834
    901081 8vmn:M (3.5) BS02 dna N/A GO:0000786 ... A0A8J1LZU9 39774834
    901082 8vmn:O (3.5) BS01 dna N/A GO:0000786 ... Q71DI3 39774834
    901083 8vmn:O (3.5) BS02 dna N/A GO:0000786 ... Q71DI3 39774834
    901084 8vmn:Q (3.5) BS01 dna N/A GO:0000781 ... P62805 39774834
    901085 8vmn:Q (3.5) BS02 dna N/A GO:0000781 ... P62805 39774834
    901086 8vmn:R (3.5) BS01 dna N/A GO:0000786 ... Q6AZJ8 39774834
    901087 8vmn:R (3.5) BS02 dna N/A GO:0000786 ... Q6AZJ8 39774834
    901088 8vmn:S (3.5) BS01 dna N/A GO:0000786 ... A0A8J1LZU9 39774834
    901089 8vmn:S (3.5) BS02 dna N/A GO:0000786 ... A0A8J1LZU9 39774834
    901090 8vmo:A (1.68) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901091 8vmo:A (1.68) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901092 8vmo:A (1.68) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901093 8vmo:A (1.68) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901094 8vmo:B (1.68) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901095 8vmo:B (1.68) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901096 8vmo:B (1.68) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901097 8vmo:B (1.68) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901098 8vmp:A (1.45) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901099 8vmp:A (1.45) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901100 8vmp:A (1.45) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901101 8vmp:A (1.45) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901102 8vmp:B (1.45) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901103 8vmp:B (1.45) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901104 8vmp:B (1.45) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901105 8vmp:B (1.45) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901106 8vmq:A (1.48) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901107 8vmq:A (1.48) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901108 8vmq:A (1.48) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901109 8vmq:A (1.48) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901110 8vmq:B (1.48) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901111 8vmq:B (1.48) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901112 8vmq:B (1.48) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901113 8vmq:B (1.48) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901114 8vmr:A (1.5) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901115 8vmr:A (1.5) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901116 8vmr:A (1.5) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901117 8vmr:A (1.5) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901118 8vmr:B (1.5) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901119 8vmr:B (1.5) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901120 8vmr:B (1.5) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901121 8vmr:B (1.5) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901122 8vms:A (1.42) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901123 8vms:A (1.42) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901124 8vms:A (1.42) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901125 8vms:A (1.42) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901126 8vms:B (1.42) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901127 8vms:B (1.42) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901128 8vms:B (1.42) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901129 8vms:B (1.42) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901130 8vmt:A (1.48) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901131 8vmt:A (1.48) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901132 8vmt:A (1.48) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901133 8vmt:A (1.48) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901134 8vmt:B (1.48) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901135 8vmt:B (1.48) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901136 8vmt:B (1.48) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901137 8vmt:B (1.48) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901138 8vmu:A (1.52) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901139 8vmu:A (1.52) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901140 8vmu:A (1.52) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901141 8vmu:A (1.52) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901142 8vmu:B (1.52) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901143 8vmu:B (1.52) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901144 8vmu:B (1.52) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901145 8vmu:B (1.52) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901146 8vmv:A (1.59) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901147 8vmv:A (1.59) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901148 8vmv:A (1.59) BS03 dna N/A GO:0004519 ... Q94702 39141555
    901149 8vmv:A (1.59) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901150 8vmv:A (1.59) BS05 ZN N/A GO:0004519 ... Q94702 39141555
    901151 8vmv:B (1.59) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901152 8vmv:B (1.59) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901153 8vmv:B (1.59) BS03 dna N/A GO:0004519 ... Q94702 39141555
    901154 8vmv:B (1.59) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901155 8vmv:B (1.59) BS05 ZN N/A GO:0004519 ... Q94702 39141555
    901156 8vmw:A (1.6) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901157 8vmw:A (1.6) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901158 8vmw:A (1.6) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901159 8vmw:A (1.6) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901160 8vmw:B (1.6) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901161 8vmw:B (1.6) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901162 8vmw:B (1.6) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901163 8vmw:B (1.6) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901164 8vmx:A (1.45) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901165 8vmx:A (1.45) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901166 8vmx:A (1.45) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901167 8vmx:A (1.45) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901168 8vmx:B (1.45) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901169 8vmx:B (1.45) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901170 8vmx:B (1.45) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901171 8vmx:B (1.45) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901172 8vmy:A (1.53) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901173 8vmy:A (1.53) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901174 8vmy:A (1.53) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901175 8vmy:A (1.53) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901176 8vmy:B (1.53) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901177 8vmy:B (1.53) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901178 8vmy:B (1.53) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901179 8vmy:B (1.53) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901180 8vmz:A (1.57) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901181 8vmz:A (1.57) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901182 8vmz:A (1.57) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901183 8vmz:A (1.57) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901184 8vmz:B (1.57) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901185 8vmz:B (1.57) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901186 8vmz:B (1.57) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901187 8vmz:B (1.57) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901188 8vn0:A (1.6) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901189 8vn0:A (1.6) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901190 8vn0:A (1.6) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901191 8vn0:A (1.6) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901192 8vn0:B (1.6) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901193 8vn0:B (1.6) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901194 8vn0:B (1.6) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901195 8vn0:B (1.6) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901196 8vn1:A (1.79) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901197 8vn1:A (1.79) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901198 8vn1:A (1.79) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901199 8vn1:A (1.79) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901200 8vn1:B (1.79) BS01 dna N/A GO:0004519 ... Q94702 39141555

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).