SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    901201 8vn1:B (1.79) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901202 8vn1:B (1.79) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901203 8vn1:B (1.79) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901204 8vn2:A (1.63) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901205 8vn2:A (1.63) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901206 8vn2:A (1.63) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901207 8vn2:A (1.63) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901208 8vn2:B (1.63) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901209 8vn2:B (1.63) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901210 8vn2:B (1.63) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901211 8vn2:B (1.63) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901212 8vn3:A (1.63) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901213 8vn3:A (1.63) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901214 8vn3:A (1.63) BS03 dna N/A GO:0004519 ... Q94702 39141555
    901215 8vn3:A (1.63) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901216 8vn3:A (1.63) BS05 ZN N/A GO:0004519 ... Q94702 39141555
    901217 8vn3:B (1.63) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901218 8vn3:B (1.63) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901219 8vn3:B (1.63) BS03 dna N/A GO:0004519 ... Q94702 39141555
    901220 8vn3:B (1.63) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901221 8vn3:B (1.63) BS05 ZN N/A GO:0004519 ... Q94702 39141555
    901222 8vn4:A (1.75) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901223 8vn4:A (1.75) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901224 8vn4:A (1.75) BS03 dna N/A GO:0004519 ... Q94702 39141555
    901225 8vn4:A (1.75) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901226 8vn4:A (1.75) BS05 ZN N/A GO:0004519 ... Q94702 39141555
    901227 8vn4:B (1.75) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901228 8vn4:B (1.75) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901229 8vn4:B (1.75) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901230 8vn4:B (1.75) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901231 8vn5:A (1.65) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901232 8vn5:A (1.65) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901233 8vn5:A (1.65) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901234 8vn5:A (1.65) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901235 8vn5:B (1.65) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901236 8vn5:B (1.65) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901237 8vn5:B (1.65) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901238 8vn5:B (1.65) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901239 8vn6:A (1.54) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901240 8vn6:A (1.54) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901241 8vn6:A (1.54) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901242 8vn6:A (1.54) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901243 8vn6:B (1.54) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901244 8vn6:B (1.54) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901245 8vn6:B (1.54) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901246 8vn6:B (1.54) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901247 8vn7:A (1.67) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901248 8vn7:A (1.67) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901249 8vn7:A (1.67) BS03 dna N/A GO:0004519 ... Q94702 39141555
    901250 8vn7:A (1.67) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901251 8vn7:A (1.67) BS05 ZN N/A GO:0004519 ... Q94702 39141555
    901252 8vn7:B (1.67) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901253 8vn7:B (1.67) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901254 8vn7:B (1.67) BS03 dna N/A GO:0004519 ... Q94702 39141555
    901255 8vn7:B (1.67) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901256 8vn7:B (1.67) BS05 ZN N/A GO:0004519 ... Q94702 39141555
    901257 8vn8:A (1.6) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901258 8vn8:A (1.6) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901259 8vn8:A (1.6) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901260 8vn8:A (1.6) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901261 8vn8:B (1.6) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901262 8vn8:B (1.6) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901263 8vn8:B (1.6) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901264 8vn8:B (1.6) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901265 8vn9:A (1.69) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901266 8vn9:A (1.69) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901267 8vn9:A (1.69) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901268 8vn9:A (1.69) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901269 8vn9:B (1.69) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901270 8vn9:B (1.69) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901271 8vn9:B (1.69) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901272 8vn9:B (1.69) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901273 8vna:A (1.54) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901274 8vna:A (1.54) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901275 8vna:A (1.54) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901276 8vna:A (1.54) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901277 8vna:B (1.54) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901278 8vna:B (1.54) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901279 8vna:B (1.54) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901280 8vna:B (1.54) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901281 8vnb:A (1.72) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901282 8vnb:A (1.72) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901283 8vnb:A (1.72) BS03 dna N/A GO:0004519 ... Q94702 39141555
    901284 8vnb:A (1.72) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901285 8vnb:A (1.72) BS05 ZN N/A GO:0004519 ... Q94702 39141555
    901286 8vnb:B (1.72) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901287 8vnb:B (1.72) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901288 8vnb:B (1.72) BS03 dna N/A GO:0004519 ... Q94702 39141555
    901289 8vnb:B (1.72) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901290 8vnb:B (1.72) BS05 ZN N/A GO:0004519 ... Q94702 39141555
    901291 8vnc:A (1.62) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901292 8vnc:A (1.62) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901293 8vnc:A (1.62) BS03 dna N/A GO:0004519 ... Q94702 39141555
    901294 8vnc:A (1.62) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901295 8vnc:A (1.62) BS05 ZN N/A GO:0004519 ... Q94702 39141555
    901296 8vnc:B (1.62) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901297 8vnc:B (1.62) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901298 8vnc:B (1.62) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901299 8vnc:B (1.62) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901300 8vnd:A (1.6) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901301 8vnd:A (1.6) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901302 8vnd:A (1.6) BS03 dna N/A GO:0004519 ... Q94702 39141555
    901303 8vnd:A (1.6) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901304 8vnd:A (1.6) BS05 ZN N/A GO:0004519 ... Q94702 39141555
    901305 8vnd:B (1.6) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901306 8vnd:B (1.6) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901307 8vnd:B (1.6) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901308 8vnd:B (1.6) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901309 8vne:A (1.57) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901310 8vne:A (1.57) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901311 8vne:A (1.57) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901312 8vne:A (1.57) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901313 8vne:B (1.57) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901314 8vne:B (1.57) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901315 8vne:B (1.57) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901316 8vne:B (1.57) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901317 8vnf:A (1.5) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901318 8vnf:A (1.5) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901319 8vnf:A (1.5) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901320 8vnf:A (1.5) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901321 8vnf:B (1.5) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901322 8vnf:B (1.5) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901323 8vnf:B (1.5) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901324 8vnf:B (1.5) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901325 8vng:A (1.6) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901326 8vng:A (1.6) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901327 8vng:A (1.6) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901328 8vng:A (1.6) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901329 8vng:B (1.6) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901330 8vng:B (1.6) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901331 8vng:B (1.6) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901332 8vng:B (1.6) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901333 8vnh:A (1.76) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901334 8vnh:A (1.76) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901335 8vnh:A (1.76) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901336 8vnh:A (1.76) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901337 8vnh:B (1.76) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901338 8vnh:B (1.76) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901339 8vnh:B (1.76) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901340 8vnh:B (1.76) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901341 8vni:A (1.57) BS01 FE2 N/A N/A N/A N/A
    901342 8vnj:A (1.61) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901343 8vnj:A (1.61) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901344 8vnj:A (1.61) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901345 8vnj:A (1.61) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901346 8vnj:B (1.61) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901347 8vnj:B (1.61) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901348 8vnj:B (1.61) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901349 8vnj:B (1.61) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901350 8vnk:A (1.61) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901351 8vnk:A (1.61) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901352 8vnk:A (1.61) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901353 8vnk:A (1.61) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901354 8vnk:B (1.61) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901355 8vnk:B (1.61) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901356 8vnk:B (1.61) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901357 8vnk:B (1.61) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901358 8vnl:A (1.64) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901359 8vnl:A (1.64) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901360 8vnl:A (1.64) BS03 dna N/A GO:0004519 ... Q94702 39141555
    901361 8vnl:A (1.64) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901362 8vnl:A (1.64) BS05 ZN N/A GO:0004519 ... Q94702 39141555
    901363 8vnl:B (1.64) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901364 8vnl:B (1.64) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901365 8vnl:B (1.64) BS03 dna N/A GO:0004519 ... Q94702 39141555
    901366 8vnl:B (1.64) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901367 8vnl:B (1.64) BS05 ZN N/A GO:0004519 ... Q94702 39141555
    901368 8vnm:A (1.59) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901369 8vnm:A (1.59) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901370 8vnm:A (1.59) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901371 8vnm:A (1.59) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901372 8vnm:B (1.59) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901373 8vnm:B (1.59) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901374 8vnm:B (1.59) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901375 8vnm:B (1.59) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901376 8vnn:A (1.79) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901377 8vnn:A (1.79) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901378 8vnn:A (1.79) BS03 dna N/A GO:0004519 ... Q94702 39141555
    901379 8vnn:A (1.79) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901380 8vnn:A (1.79) BS05 ZN N/A GO:0004519 ... Q94702 39141555
    901381 8vnn:B (1.79) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901382 8vnn:B (1.79) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901383 8vnn:B (1.79) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901384 8vnn:B (1.79) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901385 8vno:A (1.7) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901386 8vno:A (1.7) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901387 8vno:A (1.7) BS03 dna N/A GO:0004519 ... Q94702 39141555
    901388 8vno:A (1.7) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901389 8vno:A (1.7) BS05 ZN N/A GO:0004519 ... Q94702 39141555
    901390 8vno:B (1.7) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901391 8vno:B (1.7) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901392 8vno:B (1.7) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901393 8vno:B (1.7) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901394 8vnp:A (1.79) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901395 8vnp:A (1.79) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901396 8vnp:A (1.79) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901397 8vnp:A (1.79) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901398 8vnp:B (1.79) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901399 8vnp:B (1.79) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901400 8vnp:B (1.79) BS03 ZN N/A GO:0004519 ... Q94702 39141555

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).