SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    901401 8vnp:B (1.79) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901402 8vnq:A (1.93) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901403 8vnq:A (1.93) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901404 8vnq:A (1.93) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901405 8vnq:A (1.93) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901406 8vnq:B (1.93) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901407 8vnq:B (1.93) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901408 8vnq:B (1.93) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901409 8vnq:B (1.93) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901410 8vnr:A (1.98) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901411 8vnr:A (1.98) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901412 8vnr:A (1.98) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901413 8vnr:A (1.98) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901414 8vnr:B (1.98) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901415 8vnr:B (1.98) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901416 8vnr:B (1.98) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901417 8vnr:B (1.98) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901418 8vns:A (2.11) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901419 8vns:A (2.11) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901420 8vns:A (2.11) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901421 8vns:A (2.11) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901422 8vns:B (2.11) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901423 8vns:B (2.11) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901424 8vns:B (2.11) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901425 8vns:B (2.11) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901426 8vnt:A (1.62) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901427 8vnt:A (1.62) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901428 8vnt:A (1.62) BS03 dna N/A GO:0004519 ... Q94702 39141555
    901429 8vnt:A (1.62) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901430 8vnt:A (1.62) BS05 ZN N/A GO:0004519 ... Q94702 39141555
    901431 8vnt:B (1.62) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901432 8vnt:B (1.62) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901433 8vnt:B (1.62) BS03 dna N/A GO:0004519 ... Q94702 39141555
    901434 8vnt:B (1.62) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901435 8vnt:B (1.62) BS05 ZN N/A GO:0004519 ... Q94702 39141555
    901436 8vnu:A (2.2) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901437 8vnu:A (2.2) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901438 8vnu:A (2.2) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901439 8vnu:A (2.2) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901440 8vnu:B (2.2) BS01 dna N/A GO:0004519 ... Q94702 39141555
    901441 8vnu:B (2.2) BS02 dna N/A GO:0004519 ... Q94702 39141555
    901442 8vnu:B (2.2) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    901443 8vnu:B (2.2) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    901444 8vnv:C (3.1) BS01 peptide N/A GO:0000122 ... Q15910 39774834
    901445 8vnv:C (3.1) BS02 dna N/A GO:0000122 ... Q15910 39774834
    901446 8vnv:C (3.1) BS03 SAH N/A GO:0000122 ... Q15910 39774834
    901447 8vnx:A (2.0) BS01 WHQ N/A GO:0000165 ... P53779 N/A
    901448 8vnz:C (3.5) BS01 SAH N/A GO:0000122 ... Q15910 39774834
    901449 8vo0:I (3.3) BS01 dna N/A GO:0000786 ... Q71DI3 39774834
    901450 8vo0:J (3.3) BS01 dna N/A GO:0003677 ... P62805 39774834
    901451 8vo0:J (3.3) BS02 dna N/A GO:0003677 ... P62805 39774834
    901452 8vo0:K (3.3) BS01 dna N/A GO:0000786 ... Q6AZJ8 39774834
    901453 8vo0:K (3.3) BS02 dna N/A GO:0000786 ... Q6AZJ8 39774834
    901454 8vo0:M (3.3) BS01 dna N/A GO:0000786 ... P02281 39774834
    901455 8vo0:M (3.3) BS02 dna N/A GO:0000786 ... P02281 39774834
    901456 8vo0:O (3.3) BS01 dna N/A GO:0000786 ... Q71DI3 39774834
    901457 8vo0:O (3.3) BS02 dna N/A GO:0000786 ... Q71DI3 39774834
    901458 8vo0:Q (3.3) BS01 dna N/A GO:0003677 ... P62805 39774834
    901459 8vo0:Q (3.3) BS02 dna N/A GO:0003677 ... P62805 39774834
    901460 8vo0:R (3.3) BS01 dna N/A GO:0000786 ... Q6AZJ8 39774834
    901461 8vo0:R (3.3) BS02 dna N/A GO:0000786 ... Q6AZJ8 39774834
    901462 8vo0:S (3.3) BS01 dna N/A GO:0000786 ... P02281 39774834
    901463 8vo0:S (3.3) BS02 dna N/A GO:0000786 ... P02281 39774834
    901464 8vo3:A (1.5) BS01 EV1 N/A GO:0006952 ... A0A9Y2YA81 39207895
    901465 8vo4:A (2.07) BS01 WHE N/A GO:0000165 ... P53779 N/A
    901466 8vo5:B (3.0) BS01 ADP N/A GO:0001725 ... P68139 39833469
    901467 8vo5:C (3.0) BS01 ADP N/A GO:0001725 ... P68139 39833469
    901468 8vo5:D (3.0) BS01 ADP N/A GO:0001725 ... P68139 39833469
    901469 8vo6:E (3.1) BS01 ADP N/A GO:0001725 ... P68139 39833469
    901470 8vo6:F (3.1) BS01 ADP N/A GO:0001725 ... P68139 39833469
    901471 8vo6:G (3.1) BS01 ADP N/A GO:0001725 ... P68139 39833469
    901472 8vo7:B (3.1) BS01 ADP N/A GO:0001725 ... P68139 39833469
    901473 8vo7:C (3.1) BS01 ADP N/A GO:0001725 ... P68139 39833469
    901474 8vo7:D (3.1) BS01 ADP N/A GO:0001725 ... P68139 39833469
    901475 8vo7:E (3.1) BS01 ADP N/A GO:0001725 ... P68139 39833469
    901476 8vo7:F (3.1) BS01 ADP N/A GO:0001725 ... P68139 39833469
    901477 8vo7:G (3.1) BS01 ADP N/A GO:0001725 ... P68139 39833469
    901478 8vo8:B (3.9) BS01 ADP N/A GO:0001725 ... P68139 39833469
    901479 8vo8:C (3.9) BS01 ADP N/A GO:0001725 ... P68139 39833469
    901480 8vo8:D (3.9) BS01 ADP N/A GO:0001725 ... P68139 39833469
    901481 8vo8:E (3.9) BS01 ADP N/A GO:0001725 ... P68139 39833469
    901482 8vo8:F (3.9) BS01 ADP N/A GO:0001725 ... P68139 39833469
    901483 8vo8:G (3.9) BS01 ADP N/A GO:0001725 ... P68139 39833469
    901484 8vo9:B (3.4) BS01 ADP N/A GO:0001725 ... P68139 39833469
    901485 8vo9:C (3.4) BS01 ADP N/A GO:0001725 ... P68139 39833469
    901486 8vo9:D (3.4) BS01 ADP N/A GO:0001725 ... P68139 39833469
    901487 8vo9:E (3.4) BS01 ADP N/A GO:0001725 ... P68139 39833469
    901488 8vo9:F (3.4) BS01 ADP N/A GO:0001725 ... P68139 39833469
    901489 8vo9:G (3.4) BS01 ADP N/A GO:0001725 ... P68139 39833469
    901490 8voa:B (4.0) BS01 ADP N/A GO:0001725 ... P68139 39833469
    901491 8voa:C (4.0) BS01 ADP N/A GO:0001725 ... P68139 39833469
    901492 8voa:D (4.0) BS01 ADP N/A GO:0001725 ... P68139 39833469
    901493 8voa:E (4.0) BS01 ADP N/A GO:0001725 ... P68139 39833469
    901494 8voa:F (4.0) BS01 ADP N/A GO:0001725 ... P68139 39833469
    901495 8voa:G (4.0) BS01 ADP N/A GO:0001725 ... P68139 39833469
    901496 8vob:I (3.1) BS01 dna N/A GO:0000786 ... Q71DI3 39774834
    901497 8vob:I (3.1) BS02 dna N/A GO:0000786 ... Q71DI3 39774834
    901498 8vob:J (3.1) BS01 dna N/A GO:0000781 ... P62805 39774834
    901499 8vob:J (3.1) BS02 dna N/A GO:0000781 ... P62805 39774834
    901500 8vob:K (3.1) BS01 dna N/A GO:0000786 ... P0C0S8 39774834
    901501 8vob:K (3.1) BS02 dna N/A GO:0000786 ... P0C0S8 39774834
    901502 8vob:M (3.1) BS01 dna N/A GO:0000786 ... P02281 39774834
    901503 8vob:M (3.1) BS02 dna N/A GO:0000786 ... P02281 39774834
    901504 8vob:O (3.1) BS01 dna N/A GO:0000786 ... Q71DI3 39774834
    901505 8vob:O (3.1) BS02 dna N/A GO:0000786 ... Q71DI3 39774834
    901506 8vob:Q (3.1) BS01 dna N/A GO:0000781 ... P62805 39774834
    901507 8vob:Q (3.1) BS02 dna N/A GO:0000781 ... P62805 39774834
    901508 8vob:R (3.1) BS01 dna N/A GO:0000786 ... P0C0S8 39774834
    901509 8vob:R (3.1) BS02 dna N/A GO:0000786 ... P0C0S8 39774834
    901510 8vob:S (3.1) BS01 dna N/A GO:0000786 ... P02281 39774834
    901511 8vob:S (3.1) BS02 dna N/A GO:0000786 ... P02281 39774834
    901512 8voc:A (1.544) BS01 M4F N/A GO:0004497 ... Q2IU02 N/A
    901513 8voc:A (1.544) BS02 HEM N/A GO:0004497 ... Q2IU02 N/A
    901514 8vod:A () BS01 peptide N/A N/A N/A N/A
    901515 8vof:A (3.0) BS01 A1ADE N/A GO:0016301 ... Q9UBF8 39379634
    901516 8vof:B (3.0) BS01 GDP N/A GO:0000139 ... P62491 39379634
    901517 8voi:A (-1.00) BS01 MG ? N/A P11215 38729161
    901518 8voj:B (3.77) BS01 IHP N/A GO:0043161 ... Q9NVX7 39939761
    901519 8voj:B (3.77) BS02 A1ACV N/A GO:0043161 ... Q9NVX7 39939761
    901520 8voj:C (3.77) BS01 ZN N/A GO:0000118 ... Q13547 39939761
    901521 8voj:C (3.77) BS02 IHP N/A GO:0000118 ... Q13547 39939761
    901522 8voj:C (3.77) BS03 A1ACV N/A GO:0000118 ... Q13547 39939761
    901523 8voj:D (3.77) BS01 IHP N/A N/A Q9UKL0 39939761
    901524 8vok:A (1.538) BS01 HEM N/A GO:0004497 ... Q2IU02 N/A
    901525 8voo:0 (3.4) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    901526 8voo:1 (3.4) BS01 rna N/A GO:0002181 ... P61175 N/A
    901527 8voo:2 (3.4) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    901528 8voo:3 (3.4) BS01 rna N/A GO:0000027 ... P60624 N/A
    901529 8voo:4 (3.4) BS01 rna N/A GO:0000027 ... P68919 N/A
    901530 8voo:9 (3.4) BS01 rna N/A GO:0002181 ... P0A7J3 N/A
    901531 8voo:AA (3.4) BS01 dna N/A GO:0000345 ... P0A8V2 N/A
    901532 8voo:AA (3.4) BS02 dna N/A GO:0000345 ... P0A8V2 N/A
    901533 8voo:AA (3.4) BS03 rna N/A GO:0000345 ... P0A8V2 N/A
    901534 8voo:AB (3.4) BS01 dna N/A GO:0006354 ... P0AFG0 N/A
    901535 8voo:AE (3.4) BS01 dna N/A GO:0000287 ... P0A8T7 N/A
    901536 8voo:AE (3.4) BS02 dna N/A GO:0000287 ... P0A8T7 N/A
    901537 8voo:AE (3.4) BS03 rna N/A GO:0000287 ... P0A8T7 N/A
    901538 8voo:AE (3.4) BS04 MG N/A GO:0000287 ... P0A8T7 N/A
    901539 8voo:AE (3.4) BS05 ZN N/A GO:0000287 ... P0A8T7 N/A
    901540 8voo:AE (3.4) BS06 ZN N/A GO:0000287 ... P0A8T7 N/A
    901541 8voo:C (3.4) BS01 rna N/A GO:0002181 ... P0A7T7 N/A
    901542 8voo:E (3.4) BS01 rna N/A GO:0000028 ... P0A7U7 N/A
    901543 8voo:F (3.4) BS01 rna N/A GO:0000028 ... P68679 N/A
    901544 8voo:G (3.4) BS01 rna N/A GO:0000028 ... P0A7V0 N/A
    901545 8voo:I (3.4) BS01 rna N/A GO:0000028 ... P0A7V3 N/A
    901546 8voo:J (3.4) BS01 rna N/A GO:0000028 ... P0A7V8 N/A
    901547 8voo:K (3.4) BS01 rna N/A GO:0000028 ... P0A7W1 N/A
    901548 8voo:K (3.4) BS02 rna N/A GO:0000028 ... P0A7W1 N/A
    901549 8voo:L (3.4) BS01 rna N/A GO:0002181 ... P02358 N/A
    901550 8voo:M (3.4) BS01 rna N/A GO:0000028 ... P02359 N/A
    901551 8voo:M (3.4) BS02 rna N/A GO:0000028 ... P02359 N/A
    901552 8voo:N (3.4) BS01 rna N/A GO:0000028 ... P0A7W7 N/A
    901553 8voo:O (3.4) BS01 rna N/A GO:0002181 ... P0A7X3 N/A
    901554 8voo:P (3.4) BS01 rna N/A GO:0000049 ... P0A7R5 N/A
    901555 8voo:Q (3.4) BS01 rna N/A GO:0002181 ... P0A7R9 N/A
    901556 8voo:R (3.4) BS01 rna N/A GO:0000049 ... P0A7S3 N/A
    901557 8voo:S (3.4) BS01 rna N/A GO:0000028 ... P0AG59 N/A
    901558 8voo:T (3.4) BS01 rna N/A GO:0000028 ... P0ADZ4 N/A
    901559 8voo:T (3.4) BS02 rna N/A GO:0000028 ... P0ADZ4 N/A
    901560 8voo:U (3.4) BS01 rna N/A GO:0000028 ... P0A7T3 N/A
    901561 8voo:V (3.4) BS01 rna N/A GO:0000028 ... P0AG63 N/A
    901562 8voo:W (3.4) BS01 rna N/A GO:0002181 ... P0A7U3 N/A
    901563 8voo:X (3.4) BS01 rna N/A GO:0000049 ... P0A7S9 N/A
    901564 8voo:X (3.4) BS02 rna N/A GO:0000049 ... P0A7S9 N/A
    901565 8voo:Y (3.4) BS01 rna N/A GO:0000027 ... P0A7J7 N/A
    901566 8voo:b (3.4) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    901567 8voo:b (3.4) BS02 rna N/A GO:0000027 ... P0A7L8 N/A
    901568 8voo:c (3.4) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    901569 8voo:e (3.4) BS01 rna N/A GO:0000027 ... P0A7M6 N/A
    901570 8voo:f (3.4) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    901571 8voo:f (3.4) BS02 rna N/A GO:0000027 ... P0AG51 N/A
    901572 8voo:g (3.4) BS01 rna N/A GO:0002181 ... P0A7M9 N/A
    901573 8voo:h (3.4) BS01 rna N/A GO:0000027 ... P60422 N/A
    901574 8voo:i (3.4) BS01 rna N/A GO:0000027 ... P0A7N4 N/A
    901575 8voo:j (3.4) BS01 rna N/A GO:0000027 ... P60438 N/A
    901576 8voo:k (3.4) BS01 rna N/A GO:0000027 ... P0A7N9 N/A
    901577 8voo:l (3.4) BS01 rna N/A GO:0001070 ... P60723 N/A
    901578 8voo:m (3.4) BS01 rna N/A GO:0002181 ... P0A7P5 N/A
    901579 8voo:n (3.4) BS01 rna N/A GO:0000027 ... P62399 N/A
    901580 8voo:n (3.4) BS02 rna N/A GO:0000027 ... P62399 N/A
    901581 8voo:n (3.4) BS03 rna N/A GO:0000027 ... P62399 N/A
    901582 8voo:o (3.4) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    901583 8voo:p (3.4) BS01 rna N/A GO:0000027 ... P0AG55 N/A
    901584 8voo:q (3.4) BS01 rna N/A GO:0002181 ... P0A7Q6 N/A
    901585 8voo:r (3.4) BS01 rna N/A GO:0002181 ... P0A7R1 N/A
    901586 8voo:s (3.4) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    901587 8voo:t (3.4) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    901588 8voo:t (3.4) BS02 rna N/A GO:0002181 ... P0ADY3 N/A
    901589 8voo:u (3.4) BS01 rna N/A GO:0002181 ... P02413 N/A
    901590 8voo:v (3.4) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    901591 8voo:v (3.4) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    901592 8voo:w (3.4) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    901593 8voo:x (3.4) BS01 rna N/A GO:0002181 ... P0C018 N/A
    901594 8voo:x (3.4) BS02 rna N/A GO:0002181 ... P0C018 N/A
    901595 8voo:y (3.4) BS01 rna N/A GO:0000027 ... P0A7K6 N/A
    901596 8voo:z (3.4) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    901597 8vop:0 (6.0) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    901598 8vop:1 (6.0) BS01 rna N/A GO:0002181 ... P61175 N/A
    901599 8vop:2 (6.0) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    901600 8vop:3 (6.0) BS01 rna N/A GO:0000027 ... P60624 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).