SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    901801 8vor:t (3.6) BS02 rna N/A GO:0002181 ... P0ADY3 N/A
    901802 8vor:u (3.6) BS01 rna N/A GO:0002181 ... P02413 N/A
    901803 8vor:v (3.6) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    901804 8vor:v (3.6) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    901805 8vor:w (3.6) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    901806 8vor:x (3.6) BS01 rna N/A GO:0002181 ... P0C018 N/A
    901807 8vor:x (3.6) BS02 rna N/A GO:0002181 ... P0C018 N/A
    901808 8vor:y (3.6) BS01 rna N/A GO:0000027 ... P0A7K6 N/A
    901809 8vor:z (3.6) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    901810 8vos:0 (4.6) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    901811 8vos:1 (4.6) BS01 rna N/A GO:0002181 ... P61175 N/A
    901812 8vos:2 (4.6) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    901813 8vos:3 (4.6) BS01 rna N/A GO:0000027 ... P60624 N/A
    901814 8vos:4 (4.6) BS01 rna N/A GO:0000027 ... P68919 N/A
    901815 8vos:9 (4.6) BS01 rna N/A GO:0002181 ... P0A7J3 N/A
    901816 8vos:AA (4.6) BS01 dna N/A GO:0000345 ... P0A8V2 N/A
    901817 8vos:AA (4.6) BS02 dna N/A GO:0000345 ... P0A8V2 N/A
    901818 8vos:AA (4.6) BS03 rna N/A GO:0000345 ... P0A8V2 N/A
    901819 8vos:AB (4.6) BS01 rna N/A GO:0005515 ... P0AFG0 N/A
    901820 8vos:AE (4.6) BS01 dna N/A GO:0000287 ... P0A8T7 N/A
    901821 8vos:AE (4.6) BS02 dna N/A GO:0000287 ... P0A8T7 N/A
    901822 8vos:AE (4.6) BS03 rna N/A GO:0000287 ... P0A8T7 N/A
    901823 8vos:AE (4.6) BS04 MG N/A GO:0000287 ... P0A8T7 N/A
    901824 8vos:AE (4.6) BS05 ZN N/A GO:0000287 ... P0A8T7 N/A
    901825 8vos:AE (4.6) BS06 ZN N/A GO:0000287 ... P0A8T7 N/A
    901826 8vos:C (4.6) BS01 rna N/A GO:0002181 ... P0A7T7 N/A
    901827 8vos:E (4.6) BS01 rna N/A GO:0000028 ... P0A7U7 N/A
    901828 8vos:F (4.6) BS01 rna N/A GO:0000028 ... P68679 N/A
    901829 8vos:G (4.6) BS01 rna N/A GO:0000028 ... P0A7V0 N/A
    901830 8vos:I (4.6) BS01 rna N/A GO:0000028 ... P0A7V3 N/A
    901831 8vos:I (4.6) BS02 rna N/A GO:0000028 ... P0A7V3 N/A
    901832 8vos:J (4.6) BS01 rna N/A GO:0000028 ... P0A7V8 N/A
    901833 8vos:K (4.6) BS01 rna N/A GO:0000028 ... P0A7W1 N/A
    901834 8vos:K (4.6) BS02 rna N/A GO:0000028 ... P0A7W1 N/A
    901835 8vos:L (4.6) BS01 rna N/A GO:0002181 ... P02358 N/A
    901836 8vos:M (4.6) BS01 rna N/A GO:0000028 ... P02359 N/A
    901837 8vos:M (4.6) BS02 rna N/A GO:0000028 ... P02359 N/A
    901838 8vos:N (4.6) BS01 rna N/A GO:0000028 ... P0A7W7 N/A
    901839 8vos:O (4.6) BS01 rna N/A GO:0002181 ... P0A7X3 N/A
    901840 8vos:P (4.6) BS01 rna N/A GO:0000049 ... P0A7R5 N/A
    901841 8vos:Q (4.6) BS01 rna N/A GO:0002181 ... P0A7R9 N/A
    901842 8vos:R (4.6) BS01 rna N/A GO:0000049 ... P0A7S3 N/A
    901843 8vos:S (4.6) BS01 rna N/A GO:0000028 ... P0AG59 N/A
    901844 8vos:T (4.6) BS01 rna N/A GO:0000028 ... P0ADZ4 N/A
    901845 8vos:T (4.6) BS02 rna N/A GO:0000028 ... P0ADZ4 N/A
    901846 8vos:U (4.6) BS01 rna N/A GO:0000028 ... P0A7T3 N/A
    901847 8vos:V (4.6) BS01 rna N/A GO:0000028 ... P0AG63 N/A
    901848 8vos:W (4.6) BS01 rna N/A GO:0002181 ... P0A7U3 N/A
    901849 8vos:X (4.6) BS01 rna N/A GO:0000049 ... P0A7S9 N/A
    901850 8vos:X (4.6) BS02 rna N/A GO:0000049 ... P0A7S9 N/A
    901851 8vos:b (4.6) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    901852 8vos:b (4.6) BS02 rna N/A GO:0000027 ... P0A7L8 N/A
    901853 8vos:c (4.6) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    901854 8vos:e (4.6) BS01 rna N/A GO:0000027 ... P0A7M6 N/A
    901855 8vos:f (4.6) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    901856 8vos:f (4.6) BS02 rna N/A GO:0000027 ... P0AG51 N/A
    901857 8vos:g (4.6) BS01 rna N/A GO:0002181 ... P0A7M9 N/A
    901858 8vos:h (4.6) BS01 rna N/A GO:0000027 ... P60422 N/A
    901859 8vos:i (4.6) BS01 rna N/A GO:0000027 ... P0A7N4 N/A
    901860 8vos:j (4.6) BS01 rna N/A GO:0000027 ... P60438 N/A
    901861 8vos:k (4.6) BS01 rna N/A GO:0000027 ... P0A7N9 N/A
    901862 8vos:l (4.6) BS01 rna N/A GO:0001070 ... P60723 N/A
    901863 8vos:m (4.6) BS01 rna N/A GO:0002181 ... P0A7P5 N/A
    901864 8vos:n (4.6) BS01 rna N/A GO:0000027 ... P62399 N/A
    901865 8vos:n (4.6) BS02 rna N/A GO:0000027 ... P62399 N/A
    901866 8vos:o (4.6) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    901867 8vos:p (4.6) BS01 rna N/A GO:0000027 ... P0AG55 N/A
    901868 8vos:q (4.6) BS01 rna N/A GO:0002181 ... P0A7Q6 N/A
    901869 8vos:r (4.6) BS01 rna N/A GO:0002181 ... P0A7R1 N/A
    901870 8vos:s (4.6) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    901871 8vos:t (4.6) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    901872 8vos:t (4.6) BS02 rna N/A GO:0002181 ... P0ADY3 N/A
    901873 8vos:u (4.6) BS01 rna N/A GO:0002181 ... P02413 N/A
    901874 8vos:v (4.6) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    901875 8vos:v (4.6) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    901876 8vos:w (4.6) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    901877 8vos:x (4.6) BS01 rna N/A GO:0002181 ... P0C018 N/A
    901878 8vos:x (4.6) BS02 rna N/A GO:0002181 ... P0C018 N/A
    901879 8vos:y (4.6) BS01 rna N/A GO:0000027 ... P0A7K6 N/A
    901880 8vos:z (4.6) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    901881 8vot:A (1.529) BS01 E5X N/A GO:0004497 ... Q2IU02 N/A
    901882 8vot:A (1.529) BS02 HEM N/A GO:0004497 ... Q2IU02 N/A
    901883 8vou:A (2.55) BS01 A1AWW N/A GO:0004364 ... P09488 40024478
    901884 8vou:B (2.55) BS01 A1AWW N/A GO:0004364 ... P09488 40024478
    901885 8vou:C (2.55) BS01 A1AWW N/A GO:0004364 ... P09488 40024478
    901886 8vou:C (2.55) BS02 GSH N/A GO:0004364 ... P09488 40024478
    901887 8vou:D (2.55) BS01 GSH N/A GO:0004364 ... P09488 40024478
    901888 8vou:D (2.55) BS02 A1AWW N/A GO:0004364 ... P09488 40024478
    901889 8vov:A (3.6) BS01 ADP N/A GO:0000153 ... P55072 38833472
    901890 8vov:A (3.6) BS02 A1AC1 N/A GO:0000153 ... P55072 38833472
    901891 8vov:B (3.6) BS01 ADP N/A GO:0000153 ... P55072 38833472
    901892 8vov:B (3.6) BS02 A1AC1 N/A GO:0000153 ... P55072 38833472
    901893 8vov:C (3.6) BS01 ADP N/A GO:0000153 ... P55072 38833472
    901894 8vov:C (3.6) BS02 A1AC1 N/A GO:0000153 ... P55072 38833472
    901895 8vov:D (3.6) BS01 ADP N/A GO:0000153 ... P55072 38833472
    901896 8vov:D (3.6) BS02 A1AC1 N/A GO:0000153 ... P55072 38833472
    901897 8vov:E (3.6) BS01 ADP N/A GO:0000153 ... P55072 38833472
    901898 8vov:E (3.6) BS02 A1AC1 N/A GO:0000153 ... P55072 38833472
    901899 8vov:F (3.6) BS01 ADP N/A GO:0000153 ... P55072 38833472
    901900 8vov:F (3.6) BS02 A1AC1 N/A GO:0000153 ... P55072 38833472
    901901 8vow:A (3.44) BS01 ATP N/A GO:0005524 ... A3DCU1 39428489
    901902 8vow:A (3.44) BS02 ADP N/A GO:0005524 ... A3DCU1 39428489
    901903 8vow:B (3.44) BS01 ATP N/A GO:0005524 ... A3DCU1 39428489
    901904 8vow:B (3.44) BS02 ADP N/A GO:0005524 ... A3DCU1 39428489
    901905 8vox:A (3.07) BS01 ADP N/A GO:0005524 ... A3DCU1 39428489
    901906 8vox:A (3.07) BS02 MG N/A GO:0005524 ... A3DCU1 39428489
    901907 8vox:A (3.07) BS03 ADP N/A GO:0005524 ... A3DCU1 39428489
    901908 8vox:B (3.07) BS01 ADP N/A GO:0005524 ... A3DCU1 39428489
    901909 8vox:B (3.07) BS02 ADP N/A GO:0005524 ... A3DCU1 39428489
    901910 8vox:B (3.07) BS03 MG N/A GO:0005524 ... A3DCU1 39428489
    901911 8voz:A (3.03) BS01 ADP N/A GO:0005524 ... A3DCU1 39428489
    901912 8voz:A (3.03) BS02 MG N/A GO:0005524 ... A3DCU1 39428489
    901913 8voz:A (3.03) BS03 A1ACX N/A GO:0005524 ... A3DCU1 39428489
    901914 8voz:A (3.03) BS04 ADP N/A GO:0005524 ... A3DCU1 39428489
    901915 8voz:B (3.03) BS01 ADP N/A GO:0005524 ... A3DCU1 39428489
    901916 8voz:B (3.03) BS02 ADP N/A GO:0005524 ... A3DCU1 39428489
    901917 8voz:B (3.03) BS03 MG N/A GO:0005524 ... A3DCU1 39428489
    901918 8vp1:A (3.48) BS01 ATP N/A GO:0005524 ... A3DCU1 39428489
    901919 8vp1:A (3.48) BS02 ATP N/A GO:0005524 ... A3DCU1 39428489
    901920 8vp1:B (3.48) BS01 ATP N/A GO:0005524 ... A3DCU1 39428489
    901921 8vp1:B (3.48) BS02 ATP N/A GO:0005524 ... A3DCU1 39428489
    901922 8vp3:A (2.96) BS01 peptide N/A GO:0005515 ... A3DCU1 39428489
    901923 8vp3:A (2.96) BS02 ADP N/A GO:0005515 ... A3DCU1 39428489
    901924 8vp3:A (2.96) BS03 MG N/A GO:0005515 ... A3DCU1 39428489
    901925 8vp3:A (2.96) BS04 A1ACX N/A GO:0005515 ... A3DCU1 39428489
    901926 8vp3:B (2.96) BS01 peptide N/A GO:0005515 ... A3DCU1 39428489
    901927 8vp3:B (2.96) BS02 ADP N/A GO:0005515 ... A3DCU1 39428489
    901928 8vp4:A (1.51) BS01 peptide N/A GO:0004197 ... P42575 40117490
    901929 8vp4:B (1.51) BS01 peptide N/A GO:0004197 ... P42575 40117490
    901930 8vp5:A (3.18) BS01 peptide N/A GO:0005515 ... A3DCU1 39428489
    901931 8vp5:A (3.18) BS02 ADP N/A GO:0005515 ... A3DCU1 39428489
    901932 8vp5:A (3.18) BS03 A1ACX N/A GO:0005515 ... A3DCU1 39428489
    901933 8vp5:A (3.18) BS04 A1ACX N/A GO:0005515 ... A3DCU1 39428489
    901934 8vp5:B (3.18) BS01 peptide N/A GO:0005515 ... A3DCU1 39428489
    901935 8vp5:B (3.18) BS02 A1ACX N/A GO:0005515 ... A3DCU1 39428489
    901936 8vp5:B (3.18) BS03 ADP N/A GO:0005515 ... A3DCU1 39428489
    901937 8vp5:B (3.18) BS04 A1ACX N/A GO:0005515 ... A3DCU1 39428489
    901938 8vp8:A (3.37) BS01 ATP N/A GO:0005515 ... A3DCU1 39428489
    901939 8vp8:A (3.37) BS02 ATP N/A GO:0005515 ... A3DCU1 39428489
    901940 8vp8:B (3.37) BS01 ATP N/A GO:0005515 ... A3DCU1 39428489
    901941 8vp8:B (3.37) BS02 ATP N/A GO:0005515 ... A3DCU1 39428489
    901942 8vp9:A (3.18) BS01 peptide N/A GO:0005515 ... A3DCU1 39428489
    901943 8vp9:A (3.18) BS02 ADP N/A GO:0005515 ... A3DCU1 39428489
    901944 8vp9:A (3.18) BS03 A1ACX N/A GO:0005515 ... A3DCU1 39428489
    901945 8vp9:A (3.18) BS04 A1ACX N/A GO:0005515 ... A3DCU1 39428489
    901946 8vp9:B (3.18) BS01 peptide N/A GO:0005515 ... A3DCU1 39428489
    901947 8vp9:B (3.18) BS02 ADP N/A GO:0005515 ... A3DCU1 39428489
    901948 8vp9:B (3.18) BS03 A1ACX N/A GO:0005515 ... A3DCU1 39428489
    901949 8vp9:B (3.18) BS04 A1ACX N/A GO:0005515 ... A3DCU1 39428489
    901950 8vpa:A (3.11) BS01 ADP N/A GO:0005515 ... A3DCU1 39428489
    901951 8vpa:A (3.11) BS02 ADP N/A GO:0005515 ... A3DCU1 39428489
    901952 8vpa:B (3.11) BS01 ADP N/A GO:0005515 ... A3DCU1 39428489
    901953 8vpa:B (3.11) BS02 ADP N/A GO:0005515 ... A3DCU1 39428489
    901954 8vpb:A (3.23) BS01 ADP N/A GO:0005515 ... A3DCU1 39428489
    901955 8vpb:A (3.23) BS02 MG N/A GO:0005515 ... A3DCU1 39428489
    901956 8vpb:B (3.23) BS01 ADP N/A GO:0005515 ... A3DCU1 39428489
    901957 8vpb:B (3.23) BS02 MG N/A GO:0005515 ... A3DCU1 39428489
    901958 8vpg:A (3.05) BS01 dna N/A GO:0003676 ... A0A031WG99 38617249
    901959 8vpg:A (3.05) BS02 dna N/A GO:0003676 ... A0A031WG99 38617249
    901960 8vpg:A (3.05) BS03 dna N/A GO:0003676 ... A0A031WG99 38617249
    901961 8vpg:B (3.05) BS01 dna N/A GO:0003676 ... A0A031WG99 38617249
    901962 8vpg:B (3.05) BS02 dna N/A GO:0003676 ... A0A031WG99 38617249
    901963 8vpg:C (3.05) BS01 dna N/A GO:0003676 ... A0A031WG99 38617249
    901964 8vpg:C (3.05) BS02 dna N/A GO:0003676 ... A0A031WG99 38617249
    901965 8vph:A (3.18) BS01 dna N/A GO:0003676 ... A0A031WG99 38617249
    901966 8vph:A (3.18) BS02 dna N/A GO:0003676 ... A0A031WG99 38617249
    901967 8vph:A (3.18) BS03 dna N/A GO:0003676 ... A0A031WG99 38617249
    901968 8vph:A (3.18) BS04 Q8Y N/A GO:0003676 ... A0A031WG99 38617249
    901969 8vph:B (3.18) BS01 dna N/A GO:0003676 ... A0A031WG99 38617249
    901970 8vph:B (3.18) BS02 dna N/A GO:0003676 ... A0A031WG99 38617249
    901971 8vph:B (3.18) BS03 Q8Y N/A GO:0003676 ... A0A031WG99 38617249
    901972 8vph:C (3.18) BS01 dna N/A GO:0003676 ... A0A031WG99 38617249
    901973 8vph:C (3.18) BS02 dna N/A GO:0003676 ... A0A031WG99 38617249
    901974 8vph:C (3.18) BS03 Q8Y N/A GO:0003676 ... A0A031WG99 38617249
    901975 8vpi:A (2.89) BS01 dna N/A GO:0003676 ... A0A031WG99 38617249
    901976 8vpi:A (2.89) BS02 dna N/A GO:0003676 ... A0A031WG99 38617249
    901977 8vpi:A (2.89) BS03 dna N/A GO:0003676 ... A0A031WG99 38617249
    901978 8vpi:B (2.89) BS01 dna N/A GO:0003676 ... A0A031WG99 38617249
    901979 8vpi:B (2.89) BS02 dna N/A GO:0003676 ... A0A031WG99 38617249
    901980 8vpi:C (2.89) BS01 dna N/A GO:0003676 ... A0A031WG99 38617249
    901981 8vpi:C (2.89) BS02 dna N/A GO:0003676 ... A0A031WG99 38617249
    901982 8vpk:2 (2.63) BS01 rna N/A GO:0003735 ... A0QSG7 39913204
    901983 8vpk:2 (2.63) BS02 rna N/A GO:0003735 ... A0QSG7 39913204
    901984 8vpk:4 (2.63) BS01 rna N/A GO:0003924 ... A0QVY1 39913204
    901985 8vpk:C (2.63) BS01 rna N/A GO:0002181 ... A0QSD4 39913204
    901986 8vpk:D (2.63) BS01 rna N/A GO:0003735 ... A0QSD1 39913204
    901987 8vpk:E (2.63) BS01 rna N/A GO:0003735 ... A0QSD2 39913204
    901988 8vpk:F (2.63) BS01 rna N/A GO:0000049 ... A0QSG1 39913204
    901989 8vpk:F (2.63) BS02 rna N/A GO:0000049 ... A0QSG1 39913204
    901990 8vpk:G (2.63) BS01 rna N/A GO:0002181 ... A0QSG4 39913204
    901991 8vpk:H (2.63) BS01 rna N/A GO:0003735 ... A0R7F6 39913204
    901992 8vpk:I (2.63) BS01 rna N/A GO:0003735 ... A0QS62 39913204
    901993 8vpk:J (2.63) BS01 rna N/A GO:0003735 ... A0QS45 39913204
    901994 8vpk:K (2.63) BS01 rna N/A GO:0003729 ... A0QSP8 39913204
    901995 8vpk:L (2.63) BS01 rna N/A GO:0003735 ... A0QSF9 39913204
    901996 8vpk:M (2.63) BS01 rna N/A GO:0003735 ... A0QSG8 39913204
    901997 8vpk:N (2.63) BS01 rna N/A GO:0003735 ... A0QSD8 39913204
    901998 8vpk:O (2.63) BS01 rna N/A GO:0003735 ... A0QSL9 39913204
    901999 8vpk:P (2.63) BS01 rna N/A GO:0003735 ... A0QSG5 39913204
    902000 8vpk:P (2.63) BS02 rna N/A GO:0003735 ... A0QSG5 39913204

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).