SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    902001 8vpk:Q (2.63) BS01 rna N/A GO:0003735 ... A0QV42 39913204
    902002 8vpk:R (2.63) BS01 rna N/A GO:0000027 ... A0QYU6 39913204
    902003 8vpk:S (2.63) BS01 rna N/A GO:0003723 ... A0R151 39913204
    902004 8vpk:T (2.63) BS01 rna N/A GO:0003735 ... A0QSD6 39913204
    902005 8vpk:U (2.63) BS01 rna N/A GO:0003735 ... A0QSD3 39913204
    902006 8vpk:V (2.63) BS01 rna N/A GO:0003723 ... A0QSG0 39913204
    902007 8vpk:W (2.63) BS01 rna N/A GO:0003723 ... A0R3D2 39913204
    902008 8vpk:X (2.63) BS01 rna N/A GO:0003735 ... A0R150 39913204
    902009 8vpk:Y (2.63) BS01 rna N/A GO:0003735 ... A0QV03 39913204
    902010 8vpk:Z (2.63) BS01 rna N/A GO:0003735 ... A0QSD9 39913204
    902011 8vpk:b (2.63) BS01 rna N/A GO:0003735 ... A0R3I9 39913204
    902012 8vpk:c (2.63) BS01 rna N/A GO:0003735 ... A0QS39 39913204
    902013 8vpk:d (2.63) BS01 rna N/A GO:0003735 ... A0R7K0 39913204
    902014 8vpk:e (2.63) BS01 rna N/A GO:0003735 ... A0QYU7 39913204
    902015 8vpk:f (2.63) BS01 rna N/A GO:0003735 ... A0QSL4 39913204
    902016 8vpk:g (2.63) BS01 rna N/A GO:0003735 ... A0R215 39913204
    902017 8vpl:A (1.84) BS01 ZN N/A GO:0016603 ... A0A5N6D8V5 N/A
    902018 8vpm:A (2.15) BS01 ZN N/A GO:0016603 ... A0A5N6D8V5 N/A
    902019 8vpn:A (2.7) BS01 BL1 N/A GO:0006811 ... J3QSS1 39143061
    902020 8vpn:A (2.7) BS02 ATP N/A GO:0006811 ... J3QSS1 39143061
    902021 8vpn:B (2.7) BS01 ATP N/A GO:0006811 ... J3QSS1 39143061
    902022 8vpo:A (1.66) BS01 SF4 4.1.-.- GO:0003824 ... A0A1M6T2I7 38295270
    902023 8vpo:A (1.66) BS02 SF4 4.1.-.- GO:0003824 ... A0A1M6T2I7 38295270
    902024 8vpp:A (2.9) BS01 KLT N/A GO:0006811 ... J3QSS1 39143061
    902025 8vpq:C (3.3) BS01 ZN N/A GO:0000118 ... Q13547 39939763
    902026 8vpq:C (3.3) BS02 IHP N/A GO:0000118 ... Q13547 39939763
    902027 8vpq:D (3.3) BS01 IHP N/A GO:0000118 ... Q9UKL0 39939763
    902028 8vpr:A (2.7) BS01 peptide N/A GO:0005737 ... P52293 38811007
    902029 8vpu:A (2.1) BS01 peptide N/A GO:0005737 ... P52293 38811007
    902030 8vq1:A (1.3) BS01 QCV ? GO:0006355 ... Q4K977 38536910
    902031 8vq2:A (3.829) BS01 dna N/A GO:0000166 ... I7GY94 39140041
    902032 8vq2:A (3.829) BS02 dna N/A GO:0000166 ... I7GY94 39140041
    902033 8vq2:A (3.829) BS03 A1AC6 N/A GO:0000166 ... I7GY94 39140041
    902034 8vq2:B (3.829) BS01 dna N/A GO:0000166 ... I7GY94 39140041
    902035 8vq2:B (3.829) BS02 dna N/A GO:0000166 ... I7GY94 39140041
    902036 8vq2:B (3.829) BS03 A1AC6 N/A GO:0000166 ... I7GY94 39140041
    902037 8vq3:A (1.84) BS01 A1AC4 2.7.11.22 GO:0000082 ... P24941 39294320
    902038 8vq3:B (1.84) BS01 A1AC4 ? N/A P24864 39294320
    902039 8vq4:A (1.9) BS01 A1AC5 2.7.11.22 GO:0000082 ... P24941 39294320
    902040 8vq4:B (1.9) BS01 A1AC5 ? N/A P24864 39294320
    902041 8vq5:A (1.5) BS01 ZN N/A GO:0004064 ... P00918 N/A
    902042 8vq5:A (1.5) BS02 A1ADH N/A GO:0004064 ... P00918 N/A
    902043 8vq5:A (1.5) BS03 ZYX N/A GO:0004064 ... P00918 N/A
    902044 8vq6:A (1.45) BS01 ZN N/A GO:0004064 ... P00918 N/A
    902045 8vq6:A (1.45) BS02 ZYX N/A GO:0004064 ... P00918 N/A
    902046 8vq6:A (1.45) BS03 ZYX N/A GO:0004064 ... P00918 N/A
    902047 8vq6:A (1.45) BS04 ZYX N/A GO:0004064 ... P00918 N/A
    902048 8vq7:A (1.409) BS01 ZN N/A GO:0004064 ... P00918 N/A
    902049 8vqh:A (2.7) BS01 SF4 N/A GO:0005524 ... B9KK24 40274796
    902050 8vqh:B (2.7) BS01 SF4 N/A GO:0000794 ... Q12306
    Q9Z5D9
    40274796
    902051 8vqh:C (2.7) BS01 SF4 N/A GO:0005524 ... B9KK24 40274796
    902052 8vqh:D (2.7) BS01 SF4 N/A GO:0000794 ... Q12306
    Q9Z5D9
    40274796
    902053 8vqi:A (3.13) BS01 SF4 N/A GO:0005524 ... B9KK24 40274796
    902054 8vqi:A (3.13) BS02 PMR N/A GO:0005524 ... B9KK24 40274796
    902055 8vqi:B (3.13) BS01 SF4 N/A GO:0005524 ... B9KK25 40274796
    902056 8vqi:B (3.13) BS02 PMR N/A GO:0005524 ... B9KK25 40274796
    902057 8vqi:C (3.13) BS01 SF4 N/A GO:0005524 ... B9KK24 40274796
    902058 8vqi:C (3.13) BS02 PMR N/A GO:0005524 ... B9KK24 40274796
    902059 8vqi:D (3.13) BS01 SF4 N/A GO:0005524 ... B9KK25 40274796
    902060 8vqi:D (3.13) BS02 PMR N/A GO:0005524 ... B9KK25 40274796
    902061 8vqj:A (3.82) BS01 SF4 N/A GO:0005524 ... B9KK24 40274796
    902062 8vqj:A (3.82) BS02 PMR N/A GO:0005524 ... B9KK24 40274796
    902063 8vqj:B (3.82) BS01 SF4 N/A GO:0005524 ... B9KK25 40274796
    902064 8vqj:B (3.82) BS02 PMR N/A GO:0005524 ... B9KK25 40274796
    902065 8vqj:B (3.82) BS03 PMR N/A GO:0005524 ... B9KK25 40274796
    902066 8vqj:B (3.82) BS04 CU N/A GO:0005524 ... B9KK25 40274796
    902067 8vqj:C (3.82) BS01 PMR N/A GO:0005524 ... B9KK24 40274796
    902068 8vqj:C (3.82) BS02 SF4 N/A GO:0005524 ... B9KK24 40274796
    902069 8vqj:D (3.82) BS01 PMR N/A GO:0005524 ... B9KK25 40274796
    902070 8vqj:D (3.82) BS02 PMR N/A GO:0005524 ... B9KK25 40274796
    902071 8vqj:D (3.82) BS03 SF4 N/A GO:0005524 ... B9KK25 40274796
    902072 8vqj:E (3.82) BS01 MG N/A GO:0005524 ... Q9RFD6 40274796
    902073 8vqj:E (3.82) BS02 SF4 N/A GO:0005524 ... Q9RFD6 40274796
    902074 8vqj:F (3.82) BS01 SF4 N/A GO:0005524 ... Q9RFD6 40274796
    902075 8vqj:F (3.82) BS02 MG N/A GO:0005524 ... Q9RFD6 40274796
    902076 8vql:A (2.29) BS01 A1ADD ? GO:0019031 ... P03452 38753503
    902077 8vql:B (2.29) BS01 A1ADD ? GO:0019031 ... P03452 38753503
    902078 8vqm:A (2.21) BS01 A1ADU ? GO:0019031 ... P03452 38753503
    902079 8vqm:B (2.21) BS01 A1ADU ? GO:0019031 ... P03452 38753503
    902080 8vqn:A (2.21) BS01 A1ADV ? GO:0019031 ... P03452 38753503
    902081 8vqn:B (2.21) BS01 A1ADV ? GO:0019031 ... P03452 38753503
    902082 8vqq:A (2.05) BS01 A1ADC ? GO:0019031 ... P03452 38753503
    902083 8vqq:B (2.05) BS01 A1ADC ? GO:0019031 ... P03452 38753503
    902084 8vqr:A (2.565) BS01 FUC 3.4.-.-
    3.4.17.-
    3.4.17.23
    GO:0006508 ... B4XEP4
    Q9BYF1
    38709834
    902085 8vqr:A (2.565) BS02 BMA 3.4.-.-
    3.4.17.-
    3.4.17.23
    GO:0006508 ... B4XEP4
    Q9BYF1
    38709834
    902086 8vqr:A (2.565) BS03 FUC 3.4.-.-
    3.4.17.-
    3.4.17.23
    GO:0006508 ... B4XEP4
    Q9BYF1
    38709834
    902087 8vqr:A (2.565) BS04 ZN 3.4.-.-
    3.4.17.-
    3.4.17.23
    GO:0006508 ... B4XEP4
    Q9BYF1
    38709834
    902088 8vqr:B (2.565) BS01 MAN 3.4.-.-
    3.4.17.-
    3.4.17.23
    GO:0006508 ... B4XEP4
    Q9BYF1
    38709834
    902089 8vqr:B (2.565) BS02 FUC 3.4.-.-
    3.4.17.-
    3.4.17.23
    GO:0006508 ... B4XEP4
    Q9BYF1
    38709834
    902090 8vqr:B (2.565) BS03 ZN 3.4.-.-
    3.4.17.-
    3.4.17.23
    GO:0006508 ... B4XEP4
    Q9BYF1
    38709834
    902091 8vqs:A (2.0) BS01 HEM N/A GO:0019825 ... Q9NAV7 N/A
    902092 8vqs:A (2.0) BS02 A1ADK N/A GO:0019825 ... Q9NAV7 N/A
    902093 8vqs:B (2.0) BS01 HEM N/A GO:0019825 ... Q9NAV7 N/A
    902094 8vqs:B (2.0) BS02 A1ADK N/A GO:0019825 ... Q9NAV7 N/A
    902095 8vqt:A (2.05) BS01 HEM N/A GO:0019825 ... Q9NAV7 N/A
    902096 8vqt:A (2.05) BS02 A1ADL N/A GO:0019825 ... Q9NAV7 N/A
    902097 8vqt:B (2.05) BS01 HEM N/A GO:0019825 ... Q9NAV7 N/A
    902098 8vqt:B (2.05) BS02 A1ADL N/A GO:0019825 ... Q9NAV7 N/A
    902099 8vqu:A (1.751) BS01 HEM N/A GO:0019825 ... Q9NAV7 N/A
    902100 8vqu:A (1.751) BS02 A1ADJ N/A GO:0019825 ... Q9NAV7 N/A
    902101 8vqu:B (1.751) BS01 HEM N/A GO:0019825 ... Q9NAV7 N/A
    902102 8vqw:C (2.2) BS01 COA 1.2.1.8 GO:0006578 ... A0A0H3FPU4 N/A
    902103 8vqw:D (2.2) BS01 COA 1.2.1.8 GO:0006578 ... A0A0H3FPU4 N/A
    902104 8vqx:A (1.35) BS01 A1ADM N/A GO:0008233 ... P0DTD1 38518735
    902105 8vqy:A (2.82) BS01 ABU N/A GO:0004888 ... P47870 38898000
    902106 8vqy:A (2.82) BS02 A1ADG N/A GO:0004888 ... P47870 38898000
    902107 8vqy:B (2.82) BS01 ABU N/A GO:0004888 ... P14867 38898000
    902108 8vqy:B (2.82) BS02 A1ADG N/A GO:0004888 ... P14867 38898000
    902109 8vqy:B (2.82) BS03 Q3G N/A GO:0004888 ... P14867 38898000
    902110 8vqy:C (2.82) BS01 ABU N/A GO:0004888 ... P47870 38898000
    902111 8vqy:C (2.82) BS02 A1ADG N/A GO:0004888 ... P47870 38898000
    902112 8vqy:C (2.82) BS03 Q3G N/A GO:0004888 ... P47870 38898000
    902113 8vqy:D (2.82) BS01 ABU N/A GO:0004888 ... P14867 38898000
    902114 8vqy:D (2.82) BS02 Q3G N/A GO:0004888 ... P14867 38898000
    902115 8vqy:D (2.82) BS03 A1ADG N/A GO:0004888 ... P14867 38898000
    902116 8vqy:E (2.82) BS01 MAN N/A GO:0004888 ... P18507 38898000
    902117 8vqy:E (2.82) BS02 MAN N/A GO:0004888 ... P18507 38898000
    902118 8vqy:E (2.82) BS03 A1ADG N/A GO:0004888 ... P18507 38898000
    902119 8vqz:A (2.05) BS01 C5P 1.2.1.8 GO:0006578 ... A0A0H3FPU4 N/A
    902120 8vqz:B (2.05) BS01 C5P 1.2.1.8 GO:0006578 ... A0A0H3FPU4 N/A
    902121 8vqz:C (2.05) BS01 C5P 1.2.1.8 GO:0006578 ... A0A0H3FPU4 N/A
    902122 8vqz:D (2.05) BS01 C5P 1.2.1.8 GO:0006578 ... A0A0H3FPU4 N/A
    902123 8vr0:A (2.25) BS01 5GP 1.2.1.8 GO:0006578 ... A0A0H3FPU4 N/A
    902124 8vr0:B (2.25) BS01 5GP 1.2.1.8 GO:0006578 ... A0A0H3FPU4 N/A
    902125 8vr0:C (2.25) BS01 5GP 1.2.1.8 GO:0006578 ... A0A0H3FPU4 N/A
    902126 8vr1:A (2.05) BS01 CTP 1.2.1.8 GO:0006578 ... A0A0H3FPU4 N/A
    902127 8vr1:B (2.05) BS01 CTP 1.2.1.8 GO:0006578 ... A0A0H3FPU4 N/A
    902128 8vr1:C (2.05) BS01 CTP 1.2.1.8 GO:0006578 ... A0A0H3FPU4 N/A
    902129 8vr1:D (2.05) BS01 CTP 1.2.1.8 GO:0006578 ... A0A0H3FPU4 N/A
    902130 8vr2:A (1.8) BS01 NAD ? N/A Q1QD53 N/A
    902131 8vr2:A (1.8) BS02 UDP ? N/A Q1QD53 N/A
    902132 8vr2:B (1.8) BS01 NAD ? N/A Q1QD53 N/A
    902133 8vr2:B (1.8) BS02 UDP ? N/A Q1QD53 N/A
    902134 8vr2:C (1.8) BS01 NAD ? N/A Q1QD53 N/A
    902135 8vr2:C (1.8) BS02 UDP ? N/A Q1QD53 N/A
    902136 8vr2:D (1.8) BS01 NAD ? N/A Q1QD53 N/A
    902137 8vr2:D (1.8) BS02 UDP ? N/A Q1QD53 N/A
    902138 8vr3:B (2.0) BS01 A1ADI ? GO:0000271 ... Q1QD52 N/A
    902139 8vr4:2 (2.8) BS01 rna N/A GO:0003735 ... A0QSG7 39913204
    902140 8vr4:2 (2.8) BS02 rna N/A GO:0003735 ... A0QSG7 39913204
    902141 8vr4:4 (2.8) BS01 rna N/A GO:0003924 ... A0QVY1 39913204
    902142 8vr4:4 (2.8) BS02 ERY N/A GO:0003924 ... A0QVY1 39913204
    902143 8vr4:C (2.8) BS01 rna N/A GO:0002181 ... A0QSD4 39913204
    902144 8vr4:D (2.8) BS01 rna N/A GO:0003735 ... A0QSD1 39913204
    902145 8vr4:E (2.8) BS01 rna N/A GO:0003735 ... A0QSD2 39913204
    902146 8vr4:F (2.8) BS01 rna N/A GO:0000049 ... A0QSG1 39913204
    902147 8vr4:F (2.8) BS02 rna N/A GO:0000049 ... A0QSG1 39913204
    902148 8vr4:G (2.8) BS01 rna N/A GO:0002181 ... A0QSG4 39913204
    902149 8vr4:H (2.8) BS01 rna N/A GO:0003735 ... A0R7F6 39913204
    902150 8vr4:J (2.8) BS01 rna N/A GO:0003735 ... A0QS45 39913204
    902151 8vr4:K (2.8) BS01 rna N/A GO:0003729 ... A0QSP8 39913204
    902152 8vr4:L (2.8) BS01 rna N/A GO:0003735 ... A0QSF9 39913204
    902153 8vr4:M (2.8) BS01 rna N/A GO:0003735 ... A0QSG8 39913204
    902154 8vr4:N (2.8) BS01 rna N/A GO:0003735 ... A0QSD8 39913204
    902155 8vr4:O (2.8) BS01 rna N/A GO:0003735 ... A0QSL9 39913204
    902156 8vr4:P (2.8) BS01 rna N/A GO:0003735 ... A0QSG5 39913204
    902157 8vr4:P (2.8) BS02 rna N/A GO:0003735 ... A0QSG5 39913204
    902158 8vr4:Q (2.8) BS01 rna N/A GO:0003735 ... A0QV42 39913204
    902159 8vr4:R (2.8) BS01 rna N/A GO:0000027 ... A0QYU6 39913204
    902160 8vr4:S (2.8) BS01 rna N/A GO:0003723 ... A0R151 39913204
    902161 8vr4:T (2.8) BS01 rna N/A GO:0003735 ... A0QSD6 39913204
    902162 8vr4:U (2.8) BS01 rna N/A GO:0003735 ... A0QSD3 39913204
    902163 8vr4:V (2.8) BS01 rna N/A GO:0003723 ... A0QSG0 39913204
    902164 8vr4:W (2.8) BS01 rna N/A GO:0003723 ... A0R3D2 39913204
    902165 8vr4:X (2.8) BS01 rna N/A GO:0003735 ... A0R150 39913204
    902166 8vr4:Y (2.8) BS01 rna N/A GO:0003735 ... A0QV03 39913204
    902167 8vr4:Z (2.8) BS01 rna N/A GO:0003735 ... A0QSD9 39913204
    902168 8vr4:b (2.8) BS01 rna N/A GO:0003735 ... A0R3I9 39913204
    902169 8vr4:c (2.8) BS01 rna N/A GO:0003735 ... A0QS39 39913204
    902170 8vr4:d (2.8) BS01 rna N/A GO:0003735 ... A0R7K0 39913204
    902171 8vr4:e (2.8) BS01 rna N/A GO:0003735 ... A0QYU7 39913204
    902172 8vr4:f (2.8) BS01 rna N/A GO:0003735 ... A0QSL4 39913204
    902173 8vr4:g (2.8) BS01 rna N/A GO:0003735 ... A0R215 39913204
    902174 8vr5:A (2.2) BS01 PMP ? GO:0000271 ... Q1QD52 N/A
    902175 8vr5:A (2.2) BS02 A1ADI ? GO:0000271 ... Q1QD52 N/A
    902176 8vr5:B (2.2) BS01 PDG ? GO:0000271 ... Q1QD52 N/A
    902177 8vr5:B (2.2) BS02 A1ADI ? GO:0000271 ... Q1QD52 N/A
    902178 8vr5:C (2.2) BS01 PDG ? GO:0000271 ... Q1QD52 N/A
    902179 8vr5:C (2.2) BS02 PDG ? GO:0000271 ... Q1QD52 N/A
    902180 8vr5:D (2.2) BS01 PDG ? GO:0000271 ... Q1QD52 N/A
    902181 8vr5:D (2.2) BS02 PDG ? GO:0000271 ... Q1QD52 N/A
    902182 8vr6:A (1.9) BS01 5NG ? GO:0016740 ... Q1QD51 N/A
    902183 8vr7:A (1.9) BS01 ACO ? GO:0016740 ... Q1QD51 N/A
    902184 8vr7:A (1.9) BS02 ACO ? GO:0016740 ... Q1QD51 N/A
    902185 8vr7:B (1.9) BS01 ACO ? GO:0016740 ... Q1QD51 N/A
    902186 8vr7:B (1.9) BS02 COA ? GO:0016740 ... Q1QD51 N/A
    902187 8vr7:B (1.9) BS03 EP1 ? GO:0016740 ... Q1QD51 N/A
    902188 8vr7:B (1.9) BS04 PAP ? GO:0016740 ... Q1QD51 N/A
    902189 8vr7:C (1.9) BS01 COA ? GO:0016740 ... Q1QD51 N/A
    902190 8vr7:C (1.9) BS02 ACO ? GO:0016740 ... Q1QD51 N/A
    902191 8vr7:D (1.9) BS01 ACO ? GO:0016740 ... Q1QD51 N/A
    902192 8vr7:D (1.9) BS02 COA ? GO:0016740 ... Q1QD51 N/A
    902193 8vr7:E (1.9) BS01 ACO ? GO:0016740 ... Q1QD51 N/A
    902194 8vr7:E (1.9) BS02 ACO ? GO:0016740 ... Q1QD51 N/A
    902195 8vr7:E (1.9) BS03 PAP ? GO:0016740 ... Q1QD51 N/A
    902196 8vr7:F (1.9) BS01 ACO ? GO:0016740 ... Q1QD51 N/A
    902197 8vr7:F (1.9) BS02 COA ? GO:0016740 ... Q1QD51 N/A
    902198 8vr8:2 (3.25) BS01 rna N/A GO:0003735 ... A0QSG7 39913204
    902199 8vr8:2 (3.25) BS02 rna N/A GO:0003735 ... A0QSG7 39913204
    902200 8vr8:4 (3.25) BS01 rna N/A GO:0003924 ... A0QVY1 39913204

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).