SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    902201 8vr8:C (3.25) BS01 rna N/A GO:0002181 ... A0QSD4 39913204
    902202 8vr8:D (3.25) BS01 rna N/A GO:0003735 ... A0QSD1 39913204
    902203 8vr8:E (3.25) BS01 rna N/A GO:0003735 ... A0QSD2 39913204
    902204 8vr8:G (3.25) BS01 rna N/A GO:0002181 ... A0QSG4 39913204
    902205 8vr8:H (3.25) BS01 rna N/A GO:0003735 ... A0R7F6 39913204
    902206 8vr8:I (3.25) BS01 rna N/A GO:0003735 ... A0QS62 39913204
    902207 8vr8:K (3.25) BS01 rna N/A GO:0003729 ... A0QSP8 39913204
    902208 8vr8:L (3.25) BS01 rna N/A GO:0003735 ... A0QSF9 39913204
    902209 8vr8:M (3.25) BS01 rna N/A GO:0003735 ... A0QSG8 39913204
    902210 8vr8:N (3.25) BS01 rna N/A GO:0003735 ... A0QSD8 39913204
    902211 8vr8:O (3.25) BS01 rna N/A GO:0003735 ... A0QSL9 39913204
    902212 8vr8:Q (3.25) BS01 rna N/A GO:0003735 ... A0QV42 39913204
    902213 8vr8:R (3.25) BS01 rna N/A GO:0000027 ... A0QYU6 39913204
    902214 8vr8:S (3.25) BS01 rna N/A GO:0003723 ... A0R151 39913204
    902215 8vr8:T (3.25) BS01 rna N/A GO:0003735 ... A0QSD6 39913204
    902216 8vr8:U (3.25) BS01 rna N/A GO:0003735 ... A0QSD3 39913204
    902217 8vr8:V (3.25) BS01 rna N/A GO:0003723 ... A0QSG0 39913204
    902218 8vr8:W (3.25) BS01 rna N/A GO:0003723 ... A0R3D2 39913204
    902219 8vr8:X (3.25) BS01 rna N/A GO:0003735 ... A0R150 39913204
    902220 8vr8:Y (3.25) BS01 rna N/A GO:0003735 ... A0QV03 39913204
    902221 8vr8:Z (3.25) BS01 rna N/A GO:0003735 ... A0QSD9 39913204
    902222 8vr8:b (3.25) BS01 rna N/A GO:0003735 ... A0R3I9 39913204
    902223 8vr8:c (3.25) BS01 rna N/A GO:0003735 ... A0QS39 39913204
    902224 8vr8:d (3.25) BS01 rna N/A GO:0003735 ... A0R7K0 39913204
    902225 8vr8:e (3.25) BS01 rna N/A GO:0003735 ... A0QYU7 39913204
    902226 8vr8:f (3.25) BS01 rna N/A GO:0003735 ... A0QSL4 39913204
    902227 8vr9:A (3.06) BS01 peptide N/A N/A P04439 38781214
    902228 8vr9:A (3.06) BS02 MOV N/A N/A P04439 38781214
    902229 8vr9:D (3.06) BS01 MOV N/A N/A N/A 38781214
    902230 8vr9:E (3.06) BS01 MOV N/A N/A N/A 38781214
    902231 8vra:A (3.12) BS01 peptide N/A N/A P04439 38781214
    902232 8vra:A (3.12) BS02 MOV N/A N/A P04439 38781214
    902233 8vra:D (3.12) BS01 MOV N/A N/A N/A 38781214
    902234 8vra:E (3.12) BS01 MOV N/A N/A N/A 38781214
    902235 8vrb:A (3.25) BS01 peptide N/A N/A A0A3G8GE10 38781214
    902236 8vrb:D (3.25) BS01 MOV N/A N/A N/A 38781214
    902237 8vrb:E (3.25) BS01 MOV N/A N/A N/A 38781214
    902238 8vre:A (1.83) BS01 NAI N/A GO:0004735 ... P32322 39133178
    902239 8vre:A (1.83) BS02 FPK N/A GO:0004735 ... P32322 39133178
    902240 8vre:A (1.83) BS03 FPK N/A GO:0004735 ... P32322 39133178
    902241 8vre:B (1.83) BS01 FPK N/A GO:0004735 ... P32322 39133178
    902242 8vre:B (1.83) BS02 NAI N/A GO:0004735 ... P32322 39133178
    902243 8vre:B (1.83) BS03 FPK N/A GO:0004735 ... P32322 39133178
    902244 8vre:C (1.83) BS01 NAI N/A GO:0004735 ... P32322 39133178
    902245 8vre:C (1.83) BS02 FPK N/A GO:0004735 ... P32322 39133178
    902246 8vre:C (1.83) BS03 FPK N/A GO:0004735 ... P32322 39133178
    902247 8vre:D (1.83) BS01 NAI N/A GO:0004735 ... P32322 39133178
    902248 8vre:D (1.83) BS02 FPK N/A GO:0004735 ... P32322 39133178
    902249 8vre:E (1.83) BS01 FPK N/A GO:0004735 ... P32322 39133178
    902250 8vrf:A (1.74) BS01 CA N/A GO:0016757 ... Q4QES5 N/A
    902251 8vrf:A (1.74) BS02 UPG N/A GO:0016757 ... Q4QES5 N/A
    902252 8vrf:B (1.74) BS01 CA N/A GO:0016757 ... Q4QES5 N/A
    902253 8vrf:B (1.74) BS02 CA N/A GO:0016757 ... Q4QES5 N/A
    902254 8vrf:B (1.74) BS03 UPG N/A GO:0016757 ... Q4QES5 N/A
    902255 8vrl:2 (3.33) BS01 rna N/A GO:0003735 ... A0QSG7 39913204
    902256 8vrl:2 (3.33) BS02 rna N/A GO:0003735 ... A0QSG7 39913204
    902257 8vrl:4 (3.33) BS01 rna N/A GO:0003924 ... A0QVY1 39913204
    902258 8vrl:4 (3.33) BS02 CLM N/A GO:0003924 ... A0QVY1 39913204
    902259 8vrl:C (3.33) BS01 rna N/A GO:0002181 ... A0QSD4 39913204
    902260 8vrl:D (3.33) BS01 rna N/A GO:0003735 ... A0QSD1 39913204
    902261 8vrl:E (3.33) BS01 rna N/A GO:0003735 ... A0QSD2 39913204
    902262 8vrl:G (3.33) BS01 rna N/A GO:0002181 ... A0QSG4 39913204
    902263 8vrl:H (3.33) BS01 rna N/A GO:0003735 ... A0R7F6 39913204
    902264 8vrl:K (3.33) BS01 rna N/A GO:0003729 ... A0QSP8 39913204
    902265 8vrl:L (3.33) BS01 rna N/A GO:0003735 ... A0QSF9 39913204
    902266 8vrl:M (3.33) BS01 rna N/A GO:0003735 ... A0QSG8 39913204
    902267 8vrl:N (3.33) BS01 rna N/A GO:0003735 ... A0QSD8 39913204
    902268 8vrl:O (3.33) BS01 rna N/A GO:0003735 ... A0QSL9 39913204
    902269 8vrl:P (3.33) BS01 rna N/A GO:0003735 ... A0QSG5 39913204
    902270 8vrl:P (3.33) BS02 rna N/A GO:0003735 ... A0QSG5 39913204
    902271 8vrl:Q (3.33) BS01 rna N/A GO:0003735 ... A0QV42 39913204
    902272 8vrl:R (3.33) BS01 rna N/A GO:0000027 ... A0QYU6 39913204
    902273 8vrl:S (3.33) BS01 rna N/A GO:0003723 ... A0R151 39913204
    902274 8vrl:T (3.33) BS01 rna N/A GO:0003735 ... A0QSD6 39913204
    902275 8vrl:U (3.33) BS01 rna N/A GO:0003735 ... A0QSD3 39913204
    902276 8vrl:V (3.33) BS01 rna N/A GO:0003723 ... A0QSG0 39913204
    902277 8vrl:W (3.33) BS01 rna N/A GO:0003723 ... A0R3D2 39913204
    902278 8vrl:X (3.33) BS01 rna N/A GO:0003735 ... A0R150 39913204
    902279 8vrl:Y (3.33) BS01 rna N/A GO:0003735 ... A0QV03 39913204
    902280 8vrl:Z (3.33) BS01 rna N/A GO:0003735 ... A0QSD9 39913204
    902281 8vrl:b (3.33) BS01 rna N/A GO:0003735 ... A0R3I9 39913204
    902282 8vrl:c (3.33) BS01 rna N/A GO:0003735 ... A0QS39 39913204
    902283 8vrl:d (3.33) BS01 rna N/A GO:0003735 ... A0R7K0 39913204
    902284 8vrl:e (3.33) BS01 rna N/A GO:0003735 ... A0QYU7 39913204
    902285 8vrl:f (3.33) BS01 rna N/A GO:0003735 ... A0QSL4 39913204
    902286 8vrl:g (3.33) BS01 rna N/A GO:0003735 ... A0R215 39913204
    902287 8vrn:A (2.57) BS01 ABU N/A GO:0004888 ... P47870 38898000
    902288 8vrn:A (2.57) BS02 A1ADN N/A GO:0004888 ... P47870 38898000
    902289 8vrn:B (2.57) BS01 ABU N/A GO:0004888 ... P14867 38898000
    902290 8vrn:B (2.57) BS02 A1ADN N/A GO:0004888 ... P14867 38898000
    902291 8vrn:B (2.57) BS03 Q3G N/A GO:0004888 ... P14867 38898000
    902292 8vrn:C (2.57) BS01 ABU N/A GO:0004888 ... P47870 38898000
    902293 8vrn:C (2.57) BS02 A1ADN N/A GO:0004888 ... P47870 38898000
    902294 8vrn:C (2.57) BS03 Q3G N/A GO:0004888 ... P47870 38898000
    902295 8vrn:D (2.57) BS01 MAN N/A GO:0004888 ... P14867 38898000
    902296 8vrn:D (2.57) BS02 ABU N/A GO:0004888 ... P14867 38898000
    902297 8vrn:D (2.57) BS03 A1ADN N/A GO:0004888 ... P14867 38898000
    902298 8vrn:D (2.57) BS04 Q3G N/A GO:0004888 ... P14867 38898000
    902299 8vrn:E (2.57) BS01 MAN N/A GO:0004888 ... P18507 38898000
    902300 8vrn:E (2.57) BS02 MAN N/A GO:0004888 ... P18507 38898000
    902301 8vrp:A (1.8) BS01 A1ADQ N/A GO:0016032 ... P12493 N/A
    902302 8vrp:B (1.8) BS01 A1ADQ N/A GO:0016032 ... P12493 N/A
    902303 8vrp:C (1.8) BS01 A1ADQ N/A GO:0016032 ... P12493 N/A
    902304 8vrp:C (1.8) BS02 A1ADQ N/A GO:0016032 ... P12493 N/A
    902305 8vrt:B (3.42) BS01 IHP N/A N/A Q9NVX7 39939763
    902306 8vrt:C (3.42) BS01 ZN N/A GO:0000118 ... Q13547 39939763
    902307 8vrt:C (3.42) BS02 IHP N/A GO:0000118 ... Q13547 39939763
    902308 8vrt:D (3.42) BS01 IHP N/A N/A Q9UKL0 39939763
    902309 8vrv:A (1.61) BS01 FUC N/A N/A A0A168DBN0 38953655
    902310 8vrx:B (2.04) BS01 MG N/A GO:0045302 ... A0AAN0NPC4 39276930
    902311 8vs0:A (2.46) BS01 A1ACT N/A GO:0000165 ... P53779 N/A
    902312 8vs6:A (2.73) BS01 peptide N/A GO:0001525 ... P06756 39288764
    902313 8vs6:A (2.73) BS02 CA N/A GO:0001525 ... P06756 39288764
    902314 8vs6:A (2.73) BS03 CA N/A GO:0001525 ... P06756 39288764
    902315 8vs6:A (2.73) BS04 CA N/A GO:0001525 ... P06756 39288764
    902316 8vs6:A (2.73) BS05 CA N/A GO:0001525 ... P06756 39288764
    902317 8vs6:B (2.73) BS01 peptide N/A N/A P26012 39288764
    902318 8vs6:B (2.73) BS02 CA N/A N/A P26012 39288764
    902319 8vs6:B (2.73) BS03 MG N/A N/A P26012 39288764
    902320 8vs9:L02 (3.9) BS01 rna ? GO:0000027 ... P60422 38500588
    902321 8vs9:L03 (3.9) BS01 rna ? GO:0000027 ... P60438 38500588
    902322 8vs9:L04 (3.9) BS01 rna ? GO:0001070 ... P60723 38500588
    902323 8vs9:L05 (3.9) BS01 rna ? GO:0000027 ... P62399 38500588
    902324 8vs9:L05 (3.9) BS02 rna ? GO:0000027 ... P62399 38500588
    902325 8vs9:L05 (3.9) BS03 rna ? GO:0000027 ... P62399 38500588
    902326 8vs9:L06 (3.9) BS01 rna ? GO:0000027 ... P0AG55 38500588
    902327 8vs9:L09 (3.9) BS01 rna ? GO:0002181 ... P0A7R1 38500588
    902328 8vs9:L1 (3.9) BS01 rna ? GO:0000027 ... P0A7L0 38500588
    902329 8vs9:L1 (3.9) BS02 rna ? GO:0000027 ... P0A7L0 38500588
    902330 8vs9:L10 (3.9) BS01 rna ? GO:0002181 ... P0A7J3 38500588
    902331 8vs9:L11 (3.9) BS01 rna ? GO:0000027 ... P0A7J7 38500588
    902332 8vs9:L13 (3.9) BS01 rna N/A GO:0002181 ... P0AA10 38500588
    902333 8vs9:L14 (3.9) BS01 rna ? GO:0002181 ... P0ADY3 38500588
    902334 8vs9:L14 (3.9) BS02 rna ? GO:0002181 ... P0ADY3 38500588
    902335 8vs9:L15 (3.9) BS01 rna ? GO:0002181 ... P02413 38500588
    902336 8vs9:L16 (3.9) BS01 rna ? GO:0000027 ... P0ADY7 38500588
    902337 8vs9:L16 (3.9) BS02 rna ? GO:0000027 ... P0ADY7 38500588
    902338 8vs9:L16 (3.9) BS03 rna ? GO:0000027 ... P0ADY7 38500588
    902339 8vs9:L17 (3.9) BS01 rna ? GO:0000027 ... P0AG44 38500588
    902340 8vs9:L18 (3.9) BS01 rna N/A GO:0002181 ... P0C018 38500588
    902341 8vs9:L18 (3.9) BS02 rna N/A GO:0002181 ... P0C018 38500588
    902342 8vs9:L19 (3.9) BS01 rna N/A GO:0000027 ... P0A7K6 38500588
    902343 8vs9:L19 (3.9) BS02 rna N/A GO:0000027 ... P0A7K6 38500588
    902344 8vs9:L20 (3.9) BS01 rna ? GO:0000027 ... P0A7L3 38500588
    902345 8vs9:L21 (3.9) BS01 rna ? GO:0002181 ... P0AG48 38500588
    902346 8vs9:L22 (3.9) BS01 rna ? GO:0002181 ... P61175 38500588
    902347 8vs9:L23 (3.9) BS01 rna N/A GO:0000027 ... P0ADZ0 38500588
    902348 8vs9:L24 (3.9) BS01 rna N/A GO:0000027 ... P60624 38500588
    902349 8vs9:L25 (3.9) BS01 rna N/A GO:0000027 ... P68919 38500588
    902350 8vs9:L25 (3.9) BS02 rna N/A GO:0000027 ... P68919 38500588
    902351 8vs9:L27 (3.9) BS01 rna ? GO:0000027 ... P0A7L8 38500588
    902352 8vs9:L27 (3.9) BS02 rna ? GO:0000027 ... P0A7L8 38500588
    902353 8vs9:L28 (3.9) BS01 rna ? GO:0000027 ... P0A7M2 38500588
    902354 8vs9:L29 (3.9) BS01 rna N/A GO:0000027 ... P0A7M6 38500588
    902355 8vs9:L30 (3.9) BS01 rna ? GO:0000027 ... P0AG51 38500588
    902356 8vs9:L30 (3.9) BS02 rna ? GO:0000027 ... P0AG51 38500588
    902357 8vs9:L31 (3.9) BS01 rna ? GO:0003735 ... P0A7M9 38500588
    902358 8vs9:L32 (3.9) BS01 rna N/A GO:0000027 ... P0A7N4 38500588
    902359 8vs9:L33 (3.9) BS01 rna ? GO:0000027 ... P0A7N9 38500588
    902360 8vs9:L34 (3.9) BS01 rna ? GO:0002181 ... P0A7P5 38500588
    902361 8vs9:L35 (3.9) BS01 rna ? GO:0002181 ... P0A7Q1 38500588
    902362 8vs9:L36 (3.9) BS01 rna ? GO:0002181 ... P0A7Q6 38500588
    902363 8vs9:S02 (3.9) BS01 rna ? GO:0000028 ... P0A7V0 38500588
    902364 8vs9:S02 (3.9) BS02 rna ? GO:0000028 ... P0A7V0 38500588
    902365 8vs9:S03 (3.9) BS01 rna ? GO:0000028 ... P0A7V3 38500588
    902366 8vs9:S03 (3.9) BS02 rna ? GO:0000028 ... P0A7V3 38500588
    902367 8vs9:S04 (3.9) BS01 rna ? GO:0000028 ... P0A7V8 38500588
    902368 8vs9:S05 (3.9) BS01 rna ? GO:0000028 ... P0A7W1 38500588
    902369 8vs9:S05 (3.9) BS02 rna ? GO:0000028 ... P0A7W1 38500588
    902370 8vs9:S06 (3.9) BS01 rna ? GO:0002181 ... P02358 38500588
    902371 8vs9:S07 (3.9) BS01 rna ? GO:0000028 ... P02359 38500588
    902372 8vs9:S07 (3.9) BS02 rna ? GO:0000028 ... P02359 38500588
    902373 8vs9:S08 (3.9) BS01 rna N/A GO:0000028 ... P0A7W7 38500588
    902374 8vs9:S09 (3.9) BS01 rna ? GO:0002181 ... P0A7X3 38500588
    902375 8vs9:S10 (3.9) BS01 rna N/A GO:0000049 ... P0A7R5 38500588
    902376 8vs9:S11 (3.9) BS01 rna ? GO:0002181 ... P0A7R9 38500588
    902377 8vs9:S12 (3.9) BS01 rna ? GO:0000049 ... P0A7S3 38500588
    902378 8vs9:S13 (3.9) BS01 rna ? GO:0000049 ... P0A7S9 38500588
    902379 8vs9:S13 (3.9) BS02 rna ? GO:0000049 ... P0A7S9 38500588
    902380 8vs9:S14 (3.9) BS01 rna ? GO:0000028 ... P0AG59 38500588
    902381 8vs9:S15 (3.9) BS01 rna ? GO:0000028 ... P0ADZ4 38500588
    902382 8vs9:S15 (3.9) BS02 rna ? GO:0000028 ... P0ADZ4 38500588
    902383 8vs9:S16 (3.9) BS01 rna ? GO:0000028 ... P0A7T3 38500588
    902384 8vs9:S17 (3.9) BS01 rna ? GO:0000028 ... P0AG63 38500588
    902385 8vs9:S18 (3.9) BS01 rna ? GO:0002181 ... P0A7T7 38500588
    902386 8vs9:S19 (3.9) BS01 rna N/A GO:0002181 ... P0A7U3 38500588
    902387 8vs9:S19 (3.9) BS02 rna N/A GO:0002181 ... P0A7U3 38500588
    902388 8vs9:S20 (3.9) BS01 rna ? GO:0000028 ... P0A7U7 38500588
    902389 8vs9:S21 (3.9) BS01 rna ? GO:0000028 ... P68679 38500588
    902390 8vs9:SMPB (3.9) BS01 rna ? GO:0003723 ... P0A832 38500588
    902391 8vs9:SMPB (3.9) BS02 rna ? GO:0003723 ... P0A832 38500588
    902392 8vs9:SMPB (3.9) BS03 rna ? GO:0003723 ... P0A832 38500588
    902393 8vs9:SMPB (3.9) BS04 rna ? GO:0003723 ... P0A832 38500588
    902394 8vsa:L02 (3.7) BS01 rna ? GO:0000027 ... P60422 38500588
    902395 8vsa:L02 (3.7) BS02 rna ? GO:0000027 ... P60422 38500588
    902396 8vsa:L03 (3.7) BS01 rna ? GO:0000027 ... P60438 38500588
    902397 8vsa:L04 (3.7) BS01 rna ? GO:0001070 ... P60723 38500588
    902398 8vsa:L05 (3.7) BS01 rna ? GO:0000027 ... P62399 38500588
    902399 8vsa:L05 (3.7) BS02 rna ? GO:0000027 ... P62399 38500588
    902400 8vsa:L05 (3.7) BS03 rna ? GO:0000027 ... P62399 38500588

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).