SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    902401 8vsa:L06 (3.7) BS01 rna ? GO:0000027 ... P0AG55 38500588
    902402 8vsa:L09 (3.7) BS01 rna ? GO:0002181 ... P0A7R1 38500588
    902403 8vsa:L1 (3.7) BS01 rna ? GO:0000027 ... P0A7L0 38500588
    902404 8vsa:L10 (3.7) BS01 rna ? GO:0002181 ... P0A7J3 38500588
    902405 8vsa:L11 (3.7) BS01 rna ? GO:0000027 ... P0A7J7 38500588
    902406 8vsa:L13 (3.7) BS01 rna N/A GO:0002181 ... P0AA10 38500588
    902407 8vsa:L14 (3.7) BS01 rna ? GO:0002181 ... P0ADY3 38500588
    902408 8vsa:L14 (3.7) BS02 rna ? GO:0002181 ... P0ADY3 38500588
    902409 8vsa:L15 (3.7) BS01 rna ? GO:0002181 ... P02413 38500588
    902410 8vsa:L16 (3.7) BS01 rna ? GO:0000027 ... P0ADY7 38500588
    902411 8vsa:L16 (3.7) BS02 rna ? GO:0000027 ... P0ADY7 38500588
    902412 8vsa:L16 (3.7) BS03 rna ? GO:0000027 ... P0ADY7 38500588
    902413 8vsa:L17 (3.7) BS01 rna ? GO:0000027 ... P0AG44 38500588
    902414 8vsa:L18 (3.7) BS01 rna N/A GO:0002181 ... P0C018 38500588
    902415 8vsa:L18 (3.7) BS02 rna N/A GO:0002181 ... P0C018 38500588
    902416 8vsa:L19 (3.7) BS01 rna N/A GO:0000027 ... P0A7K6 38500588
    902417 8vsa:L19 (3.7) BS02 rna N/A GO:0000027 ... P0A7K6 38500588
    902418 8vsa:L20 (3.7) BS01 rna ? GO:0000027 ... P0A7L3 38500588
    902419 8vsa:L21 (3.7) BS01 rna ? GO:0002181 ... P0AG48 38500588
    902420 8vsa:L22 (3.7) BS01 rna ? GO:0002181 ... P61175 38500588
    902421 8vsa:L23 (3.7) BS01 rna N/A GO:0000027 ... P0ADZ0 38500588
    902422 8vsa:L24 (3.7) BS01 rna N/A GO:0000027 ... P60624 38500588
    902423 8vsa:L25 (3.7) BS01 rna N/A GO:0000027 ... P68919 38500588
    902424 8vsa:L27 (3.7) BS01 rna ? GO:0000027 ... P0A7L8 38500588
    902425 8vsa:L27 (3.7) BS02 rna ? GO:0000027 ... P0A7L8 38500588
    902426 8vsa:L28 (3.7) BS01 rna ? GO:0000027 ... P0A7M2 38500588
    902427 8vsa:L29 (3.7) BS01 rna N/A GO:0000027 ... P0A7M6 38500588
    902428 8vsa:L30 (3.7) BS01 rna ? GO:0000027 ... P0AG51 38500588
    902429 8vsa:L30 (3.7) BS02 rna ? GO:0000027 ... P0AG51 38500588
    902430 8vsa:L31 (3.7) BS01 rna ? GO:0003735 ... P0A7M9 38500588
    902431 8vsa:L32 (3.7) BS01 rna N/A GO:0000027 ... P0A7N4 38500588
    902432 8vsa:L33 (3.7) BS01 rna ? GO:0000027 ... P0A7N9 38500588
    902433 8vsa:L34 (3.7) BS01 rna ? GO:0002181 ... P0A7P5 38500588
    902434 8vsa:L35 (3.7) BS01 rna ? GO:0002181 ... P0A7Q1 38500588
    902435 8vsa:L36 (3.7) BS01 rna ? GO:0002181 ... P0A7Q6 38500588
    902436 8vsa:S02 (3.7) BS01 rna ? GO:0000028 ... P0A7V0 38500588
    902437 8vsa:S02 (3.7) BS02 rna ? GO:0000028 ... P0A7V0 38500588
    902438 8vsa:S03 (3.7) BS01 rna ? GO:0000028 ... P0A7V3 38500588
    902439 8vsa:S03 (3.7) BS02 rna ? GO:0000028 ... P0A7V3 38500588
    902440 8vsa:S04 (3.7) BS01 rna ? GO:0000028 ... P0A7V8 38500588
    902441 8vsa:S05 (3.7) BS01 rna ? GO:0000028 ... P0A7W1 38500588
    902442 8vsa:S05 (3.7) BS02 rna ? GO:0000028 ... P0A7W1 38500588
    902443 8vsa:S06 (3.7) BS01 rna ? GO:0002181 ... P02358 38500588
    902444 8vsa:S07 (3.7) BS01 rna ? GO:0000028 ... P02359 38500588
    902445 8vsa:S08 (3.7) BS01 rna N/A GO:0000028 ... P0A7W7 38500588
    902446 8vsa:S09 (3.7) BS01 rna ? GO:0002181 ... P0A7X3 38500588
    902447 8vsa:S10 (3.7) BS01 rna N/A GO:0000049 ... P0A7R5 38500588
    902448 8vsa:S11 (3.7) BS01 rna ? GO:0002181 ... P0A7R9 38500588
    902449 8vsa:S12 (3.7) BS01 rna ? GO:0000049 ... P0A7S3 38500588
    902450 8vsa:S13 (3.7) BS01 rna ? GO:0000049 ... P0A7S9 38500588
    902451 8vsa:S13 (3.7) BS02 rna ? GO:0000049 ... P0A7S9 38500588
    902452 8vsa:S14 (3.7) BS01 rna ? GO:0000028 ... P0AG59 38500588
    902453 8vsa:S15 (3.7) BS01 rna ? GO:0000028 ... P0ADZ4 38500588
    902454 8vsa:S15 (3.7) BS02 rna ? GO:0000028 ... P0ADZ4 38500588
    902455 8vsa:S16 (3.7) BS01 rna ? GO:0000028 ... P0A7T3 38500588
    902456 8vsa:S17 (3.7) BS01 rna ? GO:0000028 ... P0AG63 38500588
    902457 8vsa:S18 (3.7) BS01 rna ? GO:0002181 ... P0A7T7 38500588
    902458 8vsa:S19 (3.7) BS01 rna N/A GO:0002181 ... P0A7U3 38500588
    902459 8vsa:S19 (3.7) BS02 rna N/A GO:0002181 ... P0A7U3 38500588
    902460 8vsa:S20 (3.7) BS01 rna ? GO:0000028 ... P0A7U7 38500588
    902461 8vsa:S21 (3.7) BS01 rna ? GO:0000028 ... P68679 38500588
    902462 8vsa:SMPB (3.7) BS01 rna ? GO:0003723 ... P0A832 38500588
    902463 8vsa:SMPB (3.7) BS02 rna ? GO:0003723 ... P0A832 38500588
    902464 8vsa:SMPB (3.7) BS03 rna ? GO:0003723 ... P0A832 38500588
    902465 8vsd:A (3.2) BS01 CA N/A GO:0007155 ... P06756 39288764
    902466 8vsd:A (3.2) BS02 CA N/A GO:0007155 ... P06756 39288764
    902467 8vsd:A (3.2) BS03 CA N/A GO:0007155 ... P06756 39288764
    902468 8vsd:A (3.2) BS04 CA N/A GO:0007155 ... P06756 39288764
    902469 8vsd:B (3.2) BS01 CA N/A N/A P26012 39288764
    902470 8vsd:B (3.2) BS02 MG N/A N/A P26012 39288764
    902471 8vsg:A (2.071) BS01 A1AD0 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38518735
    902472 8vsg:B (2.071) BS01 A1AD0 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38518735
    902473 8vsh:A (2.0) BS01 A1ADT ? GO:0015671 ... A9DF82 38959524
    902474 8vsh:B (2.0) BS01 A1ADT ? GO:0015671 ... A9DF82 38959524
    902475 8vsh:C (2.0) BS01 A1ADT ? GO:0015671 ... A9DF82 38959524
    902476 8vsh:D (2.0) BS01 A1ADT ? GO:0015671 ... A9DF82 38959524
    902477 8vsi:A (3.1) BS01 MG 3.6.3.- GO:0005524 ... A0A1D7Q186 38540742
    902478 8vsi:A (3.1) BS02 AOV 3.6.3.- GO:0005524 ... A0A1D7Q186 38540742
    902479 8vsi:A (3.1) BS03 AOV 3.6.3.- GO:0005524 ... A0A1D7Q186 38540742
    902480 8vsi:B (3.1) BS01 AOV 3.6.3.- GO:0005524 ... A0A376P7T7 38540742
    902481 8vsi:B (3.1) BS02 MG 3.6.3.- GO:0005524 ... A0A376P7T7 38540742
    902482 8vsi:B (3.1) BS03 AOV 3.6.3.- GO:0005524 ... A0A376P7T7 38540742
    902483 8vsj:A (2.28) BS01 peptide N/A GO:0006955 ... P01903 39672953
    902484 8vsj:B (2.28) BS01 peptide N/A GO:0006955 ... D7RIG0 39672953
    902485 8vsj:C (2.28) BS01 peptide N/A N/A Q48898 39672953
    902486 8vsk:AAA (1.515) BS01 HEM N/A GO:0019825 ... Q9NAV8 38959050
    902487 8vsk:AAA (1.515) BS02 OXY N/A GO:0019825 ... Q9NAV8 38959050
    902488 8vsk:BBB (1.515) BS01 HEM N/A GO:0019825 ... Q9NAV8 38959050
    902489 8vsk:BBB (1.515) BS02 Y8I N/A GO:0019825 ... Q9NAV8 38959050
    902490 8vsl:A (1.42) BS01 peptide N/A GO:0001836 ... P31947 N/A
    902491 8vsm:A (1.5) BS01 peptide N/A GO:0001836 ... P31947 N/A
    902492 8vsm:A (1.5) BS02 WQN N/A GO:0001836 ... P31947 N/A
    902493 8vsn:A (1.91) BS01 peptide N/A GO:0001836 ... P31947 N/A
    902494 8vsn:A (1.91) BS02 WQT N/A GO:0001836 ... P31947 N/A
    902495 8vso:B (1.5) BS01 peptide N/A GO:0001836 ... P31947 N/A
    902496 8vso:B (1.5) BS02 WQN N/A GO:0001836 ... P31947 N/A
    902497 8vsu:B (2.86) BS01 ADP N/A GO:0004672 ... Q7RTN6 38944401
    902498 8vsw:A (-1.00) BS01 HTU N/A N/A N/A 38487244
    902499 8vsy:A (1.6) BS01 WSR N/A GO:0045302 ... A0AAN0NPC4 39276930
    902500 8vsy:B (1.6) BS01 WSR N/A GO:0045302 ... A0AAN0NPC4 39276930
    902501 8vt0:A (3.58) BS01 MG N/A GO:0000287 ... P00722 39108302
    902502 8vt0:B (3.58) BS01 MG N/A GO:0000287 ... P00722 39108302
    902503 8vt0:C (3.58) BS01 MG N/A GO:0000287 ... P00722 39108302
    902504 8vt0:D (3.58) BS01 MG N/A GO:0000287 ... P00722 39108302
    902505 8vt6:A (2.31) BS01 WHQ N/A GO:0000077 ... P47811 N/A
    902506 8vt7:A (2.66) BS01 GDP ? GO:0000226 ... Q13509 38609661
    902507 8vt7:B (2.66) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38609661
    902508 8vt7:F (2.66) BS01 GDP ? GO:0000226 ... Q13509 38609661
    902509 8vt7:J (2.66) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38609661
    902510 8vt9:A (2.9) BS01 CMP N/A GO:0005221 ... G0GA88 39300080
    902511 8vt9:A (2.9) BS02 PT5 N/A GO:0005221 ... G0GA88 39300080
    902512 8vt9:A (2.9) BS03 PT5 N/A GO:0005221 ... G0GA88 39300080
    902513 8vt9:B (2.9) BS01 CMP N/A GO:0005221 ... G0GA88 39300080
    902514 8vt9:B (2.9) BS02 PT5 N/A GO:0005221 ... G0GA88 39300080
    902515 8vt9:B (2.9) BS03 PT5 N/A GO:0005221 ... G0GA88 39300080
    902516 8vt9:C (2.9) BS01 CMP N/A GO:0005221 ... G0GA88 39300080
    902517 8vt9:C (2.9) BS02 PT5 N/A GO:0005221 ... G0GA88 39300080
    902518 8vt9:C (2.9) BS03 PT5 N/A GO:0005221 ... G0GA88 39300080
    902519 8vt9:D (2.9) BS01 PT5 N/A GO:0005221 ... G0GA88 39300080
    902520 8vt9:D (2.9) BS02 CMP N/A GO:0005221 ... G0GA88 39300080
    902521 8vt9:D (2.9) BS03 PT5 N/A GO:0005221 ... G0GA88 39300080
    902522 8vta:A (3.0) BS01 CMP N/A GO:0005221 ... G0GA88 39300080
    902523 8vta:A (3.0) BS02 PT5 N/A GO:0005221 ... G0GA88 39300080
    902524 8vta:B (3.0) BS01 CMP N/A GO:0005221 ... G0GA88 39300080
    902525 8vta:B (3.0) BS02 PT5 N/A GO:0005221 ... G0GA88 39300080
    902526 8vta:C (3.0) BS01 CMP N/A GO:0005221 ... G0GA88 39300080
    902527 8vta:C (3.0) BS02 PT5 N/A GO:0005221 ... G0GA88 39300080
    902528 8vta:D (3.0) BS01 CMP N/A GO:0005221 ... G0GA88 39300080
    902529 8vta:D (3.0) BS02 PT5 N/A GO:0005221 ... G0GA88 39300080
    902530 8vtb:A (2.5) BS01 CMP N/A GO:0005221 ... G0GA88 39300080
    902531 8vtb:B (2.5) BS01 CMP N/A GO:0005221 ... G0GA88 39300080
    902532 8vtb:C (2.5) BS01 CMP N/A GO:0005221 ... G0GA88 39300080
    902533 8vtb:D (2.5) BS01 CMP N/A GO:0005221 ... G0GA88 39300080
    902534 8vtc:A (2.0) BS01 NDP N/A GO:0004146 ... P9WNX1 N/A
    902535 8vtc:A (2.0) BS02 TOP N/A GO:0004146 ... P9WNX1 N/A
    902536 8vtf:A (2.4) BS01 A1ACP N/A GO:0000165 ... P53779 N/A
    902537 8vti:A (3.9) BS01 peptide N/A GO:0004930 ... Q9HAR2 39627215
    902538 8vtj:L (2.81) BS01 BCL ? GO:0009772 ... Q3J1A5 40134359
    902539 8vtj:L (2.81) BS02 BPH ? GO:0009772 ... Q3J1A5 40134359
    902540 8vtj:L (2.81) BS03 BCL ? GO:0009772 ... Q3J1A5 40134359
    902541 8vtj:L (2.81) BS04 FE ? GO:0009772 ... Q3J1A5 40134359
    902542 8vtj:L (2.81) BS05 BPH ? GO:0009772 ... Q3J1A5 40134359
    902543 8vtj:L (2.81) BS06 BCL ? GO:0009772 ... Q3J1A5 40134359
    902544 8vtj:M (2.81) BS01 BCL ? GO:0009772 ... Q3J1A6 40134359
    902545 8vtj:M (2.81) BS02 BPH ? GO:0009772 ... Q3J1A6 40134359
    902546 8vtj:M (2.81) BS03 BCL ? GO:0009772 ... Q3J1A6 40134359
    902547 8vtj:M (2.81) BS04 FE ? GO:0009772 ... Q3J1A6 40134359
    902548 8vtj:M (2.81) BS05 BPH ? GO:0009772 ... Q3J1A6 40134359
    902549 8vtj:M (2.81) BS06 SPO ? GO:0009772 ... Q3J1A6 40134359
    902550 8vtj:M (2.81) BS07 BCL ? GO:0009772 ... Q3J1A6 40134359
    902551 8vtk:L (3.07) BS01 BPH ? GO:0009772 ... Q3J1A5 40134359
    902552 8vtk:L (3.07) BS02 BCL ? GO:0009772 ... Q3J1A5 40134359
    902553 8vtk:L (3.07) BS03 BPH ? GO:0009772 ... Q3J1A5 40134359
    902554 8vtk:L (3.07) BS04 BCL ? GO:0009772 ... Q3J1A5 40134359
    902555 8vtk:L (3.07) BS05 BCL ? GO:0009772 ... Q3J1A5 40134359
    902556 8vtk:M (3.07) BS01 BPH ? GO:0009772 ... Q3J1A6 40134359
    902557 8vtk:M (3.07) BS02 BCL ? GO:0009772 ... Q3J1A6 40134359
    902558 8vtk:M (3.07) BS03 BPH ? GO:0009772 ... Q3J1A6 40134359
    902559 8vtk:M (3.07) BS04 BCL ? GO:0009772 ... Q3J1A6 40134359
    902560 8vtk:M (3.07) BS05 SPO ? GO:0009772 ... Q3J1A6 40134359
    902561 8vtk:M (3.07) BS06 BCL ? GO:0009772 ... Q3J1A6 40134359
    902562 8vtl:L (3.05) BS01 BPH ? GO:0009772 ... Q3J1A5 40134359
    902563 8vtl:L (3.05) BS02 BCL ? GO:0009772 ... Q3J1A5 40134359
    902564 8vtl:L (3.05) BS03 BCL ? GO:0009772 ... Q3J1A5 40134359
    902565 8vtl:L (3.05) BS04 FE ? GO:0009772 ... Q3J1A5 40134359
    902566 8vtl:L (3.05) BS05 BPH ? GO:0009772 ... Q3J1A5 40134359
    902567 8vtl:L (3.05) BS06 BCL ? GO:0009772 ... Q3J1A5 40134359
    902568 8vtl:M (3.05) BS01 BPH ? GO:0009772 ... Q3J1A6 40134359
    902569 8vtl:M (3.05) BS02 BCL ? GO:0009772 ... Q3J1A6 40134359
    902570 8vtl:M (3.05) BS03 BCL ? GO:0009772 ... Q3J1A6 40134359
    902571 8vtl:M (3.05) BS04 FE ? GO:0009772 ... Q3J1A6 40134359
    902572 8vtl:M (3.05) BS05 SPO ? GO:0009772 ... Q3J1A6 40134359
    902573 8vtl:M (3.05) BS06 BPH ? GO:0009772 ... Q3J1A6 40134359
    902574 8vtl:M (3.05) BS07 BCL ? GO:0009772 ... Q3J1A6 40134359
    902575 8vtm:L (3.51) BS01 BCL ? GO:0009772 ... Q3J1A5 40134359
    902576 8vtm:L (3.51) BS02 BCL ? GO:0009772 ... Q3J1A5 40134359
    902577 8vtm:L (3.51) BS03 FE ? GO:0009772 ... Q3J1A5 40134359
    902578 8vtm:L (3.51) BS04 BPH ? GO:0009772 ... Q3J1A5 40134359
    902579 8vtm:L (3.51) BS05 BPH ? GO:0009772 ... Q3J1A5 40134359
    902580 8vtm:L (3.51) BS06 BCL ? GO:0009772 ... Q3J1A5 40134359
    902581 8vtm:M (3.51) BS01 BCL ? GO:0009772 ... Q3J1A6 40134359
    902582 8vtm:M (3.51) BS02 BCL ? GO:0009772 ... Q3J1A6 40134359
    902583 8vtm:M (3.51) BS03 FE ? GO:0009772 ... Q3J1A6 40134359
    902584 8vtm:M (3.51) BS04 BPH ? GO:0009772 ... Q3J1A6 40134359
    902585 8vtm:M (3.51) BS05 SPO ? GO:0009772 ... Q3J1A6 40134359
    902586 8vtm:M (3.51) BS06 BPH ? GO:0009772 ... Q3J1A6 40134359
    902587 8vtm:M (3.51) BS07 BCL ? GO:0009772 ... Q3J1A6 40134359
    902588 8vtn:L (3.57) BS01 BCL ? GO:0009772 ... Q3J1A5 40134359
    902589 8vtn:L (3.57) BS02 BCL ? GO:0009772 ... Q3J1A5 40134359
    902590 8vtn:L (3.57) BS03 FE ? GO:0009772 ... Q3J1A5 40134359
    902591 8vtn:L (3.57) BS04 BPH ? GO:0009772 ... Q3J1A5 40134359
    902592 8vtn:L (3.57) BS05 BPH ? GO:0009772 ... Q3J1A5 40134359
    902593 8vtn:L (3.57) BS06 BCL ? GO:0009772 ... Q3J1A5 40134359
    902594 8vtn:M (3.57) BS01 BCL ? GO:0009772 ... Q3J1A6 40134359
    902595 8vtn:M (3.57) BS02 BCL ? GO:0009772 ... Q3J1A6 40134359
    902596 8vtn:M (3.57) BS03 FE ? GO:0009772 ... Q3J1A6 40134359
    902597 8vtn:M (3.57) BS04 BPH ? GO:0009772 ... Q3J1A6 40134359
    902598 8vtn:M (3.57) BS05 SPO ? GO:0009772 ... Q3J1A6 40134359
    902599 8vtn:M (3.57) BS06 BPH ? GO:0009772 ... Q3J1A6 40134359
    902600 8vtn:M (3.57) BS07 BCL ? GO:0009772 ... Q3J1A6 40134359

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).