SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    903201 8vtw:1D (2.35) BS02 rna N/A GO:0002181 ... P60405 39039256
    903202 8vtw:1D (2.35) BS03 MG N/A GO:0002181 ... P60405 39039256
    903203 8vtw:1D (2.35) BS04 MG N/A GO:0002181 ... P60405 39039256
    903204 8vtw:1D (2.35) BS05 MG N/A GO:0002181 ... P60405 39039256
    903205 8vtw:1D (2.35) BS06 MG N/A GO:0002181 ... P60405 39039256
    903206 8vtw:1D (2.35) BS07 MG N/A GO:0002181 ... P60405 39039256
    903207 8vtw:1D (2.35) BS08 MG N/A GO:0002181 ... P60405 39039256
    903208 8vtw:1D (2.35) BS09 MG N/A GO:0002181 ... P60405 39039256
    903209 8vtw:1D (2.35) BS10 MG N/A GO:0002181 ... P60405 39039256
    903210 8vtw:1D (2.35) BS11 MG N/A GO:0002181 ... P60405 39039256
    903211 8vtw:1D (2.35) BS12 MG N/A GO:0002181 ... P60405 39039256
    903212 8vtw:1E (2.35) BS01 rna N/A GO:0003735 ... Q5SHN8 39039256
    903213 8vtw:1E (2.35) BS02 MG N/A GO:0003735 ... Q5SHN8 39039256
    903214 8vtw:1E (2.35) BS03 MG N/A GO:0003735 ... Q5SHN8 39039256
    903215 8vtw:1E (2.35) BS04 MG N/A GO:0003735 ... Q5SHN8 39039256
    903216 8vtw:1E (2.35) BS05 MG N/A GO:0003735 ... Q5SHN8 39039256
    903217 8vtw:1F (2.35) BS01 rna N/A GO:0003735 ... Q5SHN9 39039256
    903218 8vtw:1F (2.35) BS02 MG N/A GO:0003735 ... Q5SHN9 39039256
    903219 8vtw:1F (2.35) BS03 MG N/A GO:0003735 ... Q5SHN9 39039256
    903220 8vtw:1F (2.35) BS04 MG N/A GO:0003735 ... Q5SHN9 39039256
    903221 8vtw:1F (2.35) BS05 MG N/A GO:0003735 ... Q5SHN9 39039256
    903222 8vtw:1F (2.35) BS06 ARG N/A GO:0003735 ... Q5SHN9 39039256
    903223 8vtw:1F (2.35) BS07 MG N/A GO:0003735 ... Q5SHN9 39039256
    903224 8vtw:1F (2.35) BS08 MG N/A GO:0003735 ... Q5SHN9 39039256
    903225 8vtw:1F (2.35) BS09 MG N/A GO:0003735 ... Q5SHN9 39039256
    903226 8vtw:1F (2.35) BS10 MG N/A GO:0003735 ... Q5SHN9 39039256
    903227 8vtw:1F (2.35) BS11 MG N/A GO:0003735 ... Q5SHN9 39039256
    903228 8vtw:1F (2.35) BS12 MG N/A GO:0003735 ... Q5SHN9 39039256
    903229 8vtw:1F (2.35) BS13 MG N/A GO:0003735 ... Q5SHN9 39039256
    903230 8vtw:1F (2.35) BS14 MG N/A GO:0003735 ... Q5SHN9 39039256
    903231 8vtw:1F (2.35) BS15 MG N/A GO:0003735 ... Q5SHN9 39039256
    903232 8vtw:1G (2.35) BS01 rna N/A GO:0000049 ... Q5SHQ0 39039256
    903233 8vtw:1G (2.35) BS02 rna N/A GO:0000049 ... Q5SHQ0 39039256
    903234 8vtw:1G (2.35) BS03 MG N/A GO:0000049 ... Q5SHQ0 39039256
    903235 8vtw:1G (2.35) BS04 MG N/A GO:0000049 ... Q5SHQ0 39039256
    903236 8vtw:1G (2.35) BS05 MG N/A GO:0000049 ... Q5SHQ0 39039256
    903237 8vtw:1H (2.35) BS01 rna N/A GO:0002181 ... P0DOY8 39039256
    903238 8vtw:1I (2.35) BS01 rna N/A GO:0003735 ... Q5SLQ1 39039256
    903239 8vtw:1N (2.35) BS01 rna N/A GO:0003729 ... P60488 39039256
    903240 8vtw:1N (2.35) BS02 MG N/A GO:0003729 ... P60488 39039256
    903241 8vtw:1N (2.35) BS03 MG N/A GO:0003729 ... P60488 39039256
    903242 8vtw:1O (2.35) BS01 rna N/A GO:0003735 ... Q5SHP8 39039256
    903243 8vtw:1O (2.35) BS02 rna N/A GO:0003735 ... Q5SHP8 39039256
    903244 8vtw:1P (2.35) BS01 rna N/A GO:0003735 ... Q5SHQ7 39039256
    903245 8vtw:1P (2.35) BS02 MG N/A GO:0003735 ... Q5SHQ7 39039256
    903246 8vtw:1P (2.35) BS03 MG N/A GO:0003735 ... Q5SHQ7 39039256
    903247 8vtw:1Q (2.35) BS01 rna N/A GO:0003735 ... P60489 39039256
    903248 8vtw:1Q (2.35) BS02 rna N/A GO:0003735 ... P60489 39039256
    903249 8vtw:1Q (2.35) BS03 MG N/A GO:0003735 ... P60489 39039256
    903250 8vtw:1Q (2.35) BS04 MG N/A GO:0003735 ... P60489 39039256
    903251 8vtw:1Q (2.35) BS05 MG N/A GO:0003735 ... P60489 39039256
    903252 8vtw:1Q (2.35) BS06 MG N/A GO:0003735 ... P60489 39039256
    903253 8vtw:1R (2.35) BS01 rna N/A GO:0003735 ... Q9Z9H5 39039256
    903254 8vtw:1R (2.35) BS02 MG N/A GO:0003735 ... Q9Z9H5 39039256
    903255 8vtw:1R (2.35) BS03 MG N/A GO:0003735 ... Q9Z9H5 39039256
    903256 8vtw:1R (2.35) BS04 MG N/A GO:0003735 ... Q9Z9H5 39039256
    903257 8vtw:1S (2.35) BS01 rna N/A GO:0003735 ... Q5SHQ4 39039256
    903258 8vtw:1S (2.35) BS02 rna N/A GO:0003735 ... Q5SHQ4 39039256
    903259 8vtw:1T (2.35) BS01 rna N/A GO:0003735 ... P60490 39039256
    903260 8vtw:1T (2.35) BS02 rna N/A GO:0003735 ... P60490 39039256
    903261 8vtw:1U (2.35) BS01 rna N/A GO:0000027 ... P60491 39039256
    903262 8vtw:1U (2.35) BS02 MG N/A GO:0000027 ... P60491 39039256
    903263 8vtw:1U (2.35) BS03 MG N/A GO:0000027 ... P60491 39039256
    903264 8vtw:1U (2.35) BS04 MG N/A GO:0000027 ... P60491 39039256
    903265 8vtw:1U (2.35) BS05 MG N/A GO:0000027 ... P60491 39039256
    903266 8vtw:1V (2.35) BS01 rna N/A GO:0003723 ... P60492 39039256
    903267 8vtw:1V (2.35) BS02 MG N/A GO:0003723 ... P60492 39039256
    903268 8vtw:1V (2.35) BS03 MG N/A GO:0003723 ... P60492 39039256
    903269 8vtw:1V (2.35) BS04 MG N/A GO:0003723 ... P60492 39039256
    903270 8vtw:1V (2.35) BS05 MG N/A GO:0003723 ... P60492 39039256
    903271 8vtw:1W (2.35) BS01 rna N/A GO:0003735 ... Q5SHP3 39039256
    903272 8vtw:1W (2.35) BS02 MG N/A GO:0003735 ... Q5SHP3 39039256
    903273 8vtw:1X (2.35) BS01 rna N/A GO:0003735 ... Q5SHP0 39039256
    903274 8vtw:1Y (2.35) BS01 rna N/A GO:0003723 ... Q5SHP9 39039256
    903275 8vtw:1Y (2.35) BS02 ZN N/A GO:0003723 ... Q5SHP9 39039256
    903276 8vtw:1Z (2.35) BS01 rna N/A GO:0003723 ... Q5SHZ1 39039256
    903277 8vtw:1Z (2.35) BS02 rna N/A GO:0003723 ... Q5SHZ1 39039256
    903278 8vtw:1b (2.35) BS01 rna N/A GO:0003735 ... P80371 39039256
    903279 8vtw:1b (2.35) BS02 MG N/A GO:0003735 ... P80371 39039256
    903280 8vtw:1c (2.35) BS01 rna N/A GO:0003676 ... P80372 39039256
    903281 8vtw:1d (2.35) BS01 rna N/A GO:0003723 ... P80373 39039256
    903282 8vtw:1d (2.35) BS02 MG N/A GO:0003723 ... P80373 39039256
    903283 8vtw:1d (2.35) BS03 SF4 N/A GO:0003723 ... P80373 39039256
    903284 8vtw:1e (2.35) BS01 rna N/A GO:0003723 ... Q5SHQ5 39039256
    903285 8vtw:1e (2.35) BS02 MG N/A GO:0003723 ... Q5SHQ5 39039256
    903286 8vtw:1f (2.35) BS01 rna N/A GO:0003735 ... Q5SLP8 39039256
    903287 8vtw:1f (2.35) BS02 MG N/A GO:0003735 ... Q5SLP8 39039256
    903288 8vtw:1g (2.35) BS01 rna N/A GO:0000049 ... P17291 39039256
    903289 8vtw:1h (2.35) BS01 rna N/A GO:0003735 ... P0DOY9 39039256
    903290 8vtw:1i (2.35) BS01 rna N/A GO:0003723 ... P80374 39039256
    903291 8vtw:1j (2.35) BS01 rna N/A GO:0000049 ... Q5SHN7 39039256
    903292 8vtw:1k (2.35) BS01 rna N/A GO:0003735 ... P80376 39039256
    903293 8vtw:1k (2.35) BS02 MG N/A GO:0003735 ... P80376 39039256
    903294 8vtw:1l (2.35) BS01 rna N/A GO:0000049 ... Q5SHN3 39039256
    903295 8vtw:1l (2.35) BS02 MG N/A GO:0000049 ... Q5SHN3 39039256
    903296 8vtw:1m (2.35) BS01 rna N/A GO:0000049 ... P80377 39039256
    903297 8vtw:1m (2.35) BS02 rna N/A GO:0000049 ... P80377 39039256
    903298 8vtw:1m (2.35) BS03 MG N/A GO:0000049 ... P80377 39039256
    903299 8vtw:1n (2.35) BS01 rna N/A GO:0003735 ... P0DOY6 39039256
    903300 8vtw:1n (2.35) BS02 ZN N/A GO:0003735 ... P0DOY6 39039256
    903301 8vtw:1o (2.35) BS01 rna N/A GO:0003735 ... Q5SJ76 39039256
    903302 8vtw:1o (2.35) BS02 rna N/A GO:0003735 ... Q5SJ76 39039256
    903303 8vtw:1p (2.35) BS01 rna N/A GO:0003735 ... Q5SJH3 39039256
    903304 8vtw:1q (2.35) BS01 rna N/A GO:0003735 ... P0DOY7 39039256
    903305 8vtw:1r (2.35) BS01 rna N/A GO:0003735 ... Q5SLQ0 39039256
    903306 8vtw:1s (2.35) BS01 rna N/A GO:0000028 ... Q5SHP2 39039256
    903307 8vtw:1t (2.35) BS01 rna N/A GO:0003723 ... P80380 39039256
    903308 8vtw:1t (2.35) BS02 MG N/A GO:0003723 ... P80380 39039256
    903309 8vtw:1y (2.35) BS01 rna N/A GO:0005515 ... P0AD49 39039256
    903310 8vtw:1y (2.35) BS02 MG N/A GO:0005515 ... P0AD49 39039256
    903311 8vtw:20 (2.35) BS01 rna N/A GO:0003735 ... P60493 39039256
    903312 8vtw:20 (2.35) BS02 rna N/A GO:0003735 ... P60493 39039256
    903313 8vtw:20 (2.35) BS03 MG N/A GO:0003735 ... P60493 39039256
    903314 8vtw:21 (2.35) BS01 rna N/A GO:0003735 ... P60494 39039256
    903315 8vtw:22 (2.35) BS01 rna N/A GO:0003735 ... Q5SHP6 39039256
    903316 8vtw:23 (2.35) BS01 rna N/A GO:0003735 ... Q5SHQ6 39039256
    903317 8vtw:23 (2.35) BS02 rna N/A GO:0003735 ... Q5SHQ6 39039256
    903318 8vtw:23 (2.35) BS03 MG N/A GO:0003735 ... Q5SHQ6 39039256
    903319 8vtw:24 (2.35) BS01 rna N/A GO:0003735 ... Q5SJE1 39039256
    903320 8vtw:24 (2.35) BS02 ZN N/A GO:0003735 ... Q5SJE1 39039256
    903321 8vtw:25 (2.35) BS01 rna N/A GO:0003735 ... P80339 39039256
    903322 8vtw:25 (2.35) BS02 MG N/A GO:0003735 ... P80339 39039256
    903323 8vtw:25 (2.35) BS03 ZN N/A GO:0003735 ... P80339 39039256
    903324 8vtw:26 (2.35) BS01 rna N/A GO:0003735 ... P35871 39039256
    903325 8vtw:26 (2.35) BS02 MG N/A GO:0003735 ... P35871 39039256
    903326 8vtw:26 (2.35) BS03 ZN N/A GO:0003735 ... P35871 39039256
    903327 8vtw:27 (2.35) BS01 rna N/A GO:0003735 ... P80340 39039256
    903328 8vtw:27 (2.35) BS02 MG N/A GO:0003735 ... P80340 39039256
    903329 8vtw:27 (2.35) BS03 MG N/A GO:0003735 ... P80340 39039256
    903330 8vtw:27 (2.35) BS04 MG N/A GO:0003735 ... P80340 39039256
    903331 8vtw:28 (2.35) BS01 rna N/A GO:0003735 ... Q5SKU1 39039256
    903332 8vtw:29 (2.35) BS01 rna N/A GO:0003735 ... Q5SHR2 39039256
    903333 8vtw:29 (2.35) BS02 ZN N/A GO:0003735 ... Q5SHR2 39039256
    903334 8vtw:2D (2.35) BS01 rna N/A GO:0002181 ... P60405 39039256
    903335 8vtw:2D (2.35) BS02 MG N/A GO:0002181 ... P60405 39039256
    903336 8vtw:2D (2.35) BS03 MG N/A GO:0002181 ... P60405 39039256
    903337 8vtw:2D (2.35) BS04 MG N/A GO:0002181 ... P60405 39039256
    903338 8vtw:2D (2.35) BS05 MG N/A GO:0002181 ... P60405 39039256
    903339 8vtw:2D (2.35) BS06 MG N/A GO:0002181 ... P60405 39039256
    903340 8vtw:2D (2.35) BS07 MG N/A GO:0002181 ... P60405 39039256
    903341 8vtw:2E (2.35) BS01 rna N/A GO:0003735 ... Q5SHN8 39039256
    903342 8vtw:2E (2.35) BS02 MG N/A GO:0003735 ... Q5SHN8 39039256
    903343 8vtw:2E (2.35) BS03 MG N/A GO:0003735 ... Q5SHN8 39039256
    903344 8vtw:2F (2.35) BS01 rna N/A GO:0003735 ... Q5SHN9 39039256
    903345 8vtw:2F (2.35) BS02 MG N/A GO:0003735 ... Q5SHN9 39039256
    903346 8vtw:2F (2.35) BS03 MG N/A GO:0003735 ... Q5SHN9 39039256
    903347 8vtw:2F (2.35) BS04 MG N/A GO:0003735 ... Q5SHN9 39039256
    903348 8vtw:2F (2.35) BS05 MG N/A GO:0003735 ... Q5SHN9 39039256
    903349 8vtw:2G (2.35) BS01 rna N/A GO:0000049 ... Q5SHQ0 39039256
    903350 8vtw:2G (2.35) BS02 rna N/A GO:0000049 ... Q5SHQ0 39039256
    903351 8vtw:2G (2.35) BS03 MG N/A GO:0000049 ... Q5SHQ0 39039256
    903352 8vtw:2H (2.35) BS01 rna N/A GO:0002181 ... P0DOY8 39039256
    903353 8vtw:2I (2.35) BS01 rna N/A GO:0003735 ... Q5SLQ1 39039256
    903354 8vtw:2N (2.35) BS01 rna N/A GO:0003729 ... P60488 39039256
    903355 8vtw:2O (2.35) BS01 rna N/A GO:0003735 ... Q5SHP8 39039256
    903356 8vtw:2O (2.35) BS02 rna N/A GO:0003735 ... Q5SHP8 39039256
    903357 8vtw:2P (2.35) BS01 rna N/A GO:0003735 ... Q5SHQ7 39039256
    903358 8vtw:2Q (2.35) BS01 rna N/A GO:0003735 ... P60489 39039256
    903359 8vtw:2Q (2.35) BS02 rna N/A GO:0003735 ... P60489 39039256
    903360 8vtw:2Q (2.35) BS03 MG N/A GO:0003735 ... P60489 39039256
    903361 8vtw:2Q (2.35) BS04 MG N/A GO:0003735 ... P60489 39039256
    903362 8vtw:2R (2.35) BS01 rna N/A GO:0003735 ... Q9Z9H5 39039256
    903363 8vtw:2R (2.35) BS02 MG N/A GO:0003735 ... Q9Z9H5 39039256
    903364 8vtw:2S (2.35) BS01 rna N/A GO:0003735 ... Q5SHQ4 39039256
    903365 8vtw:2S (2.35) BS02 rna N/A GO:0003735 ... Q5SHQ4 39039256
    903366 8vtw:2T (2.35) BS01 rna N/A GO:0003735 ... P60490 39039256
    903367 8vtw:2T (2.35) BS02 rna N/A GO:0003735 ... P60490 39039256
    903368 8vtw:2U (2.35) BS01 rna N/A GO:0000027 ... P60491 39039256
    903369 8vtw:2V (2.35) BS01 rna N/A GO:0003723 ... P60492 39039256
    903370 8vtw:2V (2.35) BS02 MG N/A GO:0003723 ... P60492 39039256
    903371 8vtw:2V (2.35) BS03 MG N/A GO:0003723 ... P60492 39039256
    903372 8vtw:2W (2.35) BS01 rna N/A GO:0003735 ... Q5SHP3 39039256
    903373 8vtw:2W (2.35) BS02 MG N/A GO:0003735 ... Q5SHP3 39039256
    903374 8vtw:2W (2.35) BS03 MG N/A GO:0003735 ... Q5SHP3 39039256
    903375 8vtw:2X (2.35) BS01 rna N/A GO:0003735 ... Q5SHP0 39039256
    903376 8vtw:2Y (2.35) BS01 rna N/A GO:0003723 ... Q5SHP9 39039256
    903377 8vtw:2Y (2.35) BS02 ZN N/A GO:0003723 ... Q5SHP9 39039256
    903378 8vtw:2Z (2.35) BS01 rna N/A GO:0003723 ... Q5SHZ1 39039256
    903379 8vtw:2Z (2.35) BS02 rna N/A GO:0003723 ... Q5SHZ1 39039256
    903380 8vtw:2b (2.35) BS01 rna N/A GO:0003735 ... P80371 39039256
    903381 8vtw:2c (2.35) BS01 rna N/A GO:0003676 ... P80372 39039256
    903382 8vtw:2d (2.35) BS01 rna N/A GO:0003723 ... P80373 39039256
    903383 8vtw:2d (2.35) BS02 SF4 N/A GO:0003723 ... P80373 39039256
    903384 8vtw:2e (2.35) BS01 rna N/A GO:0003723 ... Q5SHQ5 39039256
    903385 8vtw:2f (2.35) BS01 rna N/A GO:0003735 ... Q5SLP8 39039256
    903386 8vtw:2f (2.35) BS02 MG N/A GO:0003735 ... Q5SLP8 39039256
    903387 8vtw:2g (2.35) BS01 rna N/A GO:0000049 ... P17291 39039256
    903388 8vtw:2h (2.35) BS01 rna N/A GO:0003735 ... P0DOY9 39039256
    903389 8vtw:2i (2.35) BS01 rna N/A GO:0003723 ... P80374 39039256
    903390 8vtw:2j (2.35) BS01 rna N/A GO:0000049 ... Q5SHN7 39039256
    903391 8vtw:2j (2.35) BS02 MG N/A GO:0000049 ... Q5SHN7 39039256
    903392 8vtw:2k (2.35) BS01 rna N/A GO:0003735 ... P80376 39039256
    903393 8vtw:2k (2.35) BS02 MG N/A GO:0003735 ... P80376 39039256
    903394 8vtw:2l (2.35) BS01 rna N/A GO:0000049 ... Q5SHN3 39039256
    903395 8vtw:2l (2.35) BS02 MG N/A GO:0000049 ... Q5SHN3 39039256
    903396 8vtw:2m (2.35) BS01 rna N/A GO:0000049 ... P80377 39039256
    903397 8vtw:2n (2.35) BS01 rna N/A GO:0003735 ... P0DOY6 39039256
    903398 8vtw:2n (2.35) BS02 ZN N/A GO:0003735 ... P0DOY6 39039256
    903399 8vtw:2o (2.35) BS01 rna N/A GO:0003735 ... Q5SJ76 39039256
    903400 8vtw:2o (2.35) BS02 rna N/A GO:0003735 ... Q5SJ76 39039256

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).