SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    904401 8wuv:A (3.0) BS01 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    904402 8wuv:A (3.0) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    904403 8wuv:A (3.0) BS03 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    904404 8wuv:E (3.0) BS01 rna ? N/A Q8UN00 38811740
    904405 8wuv:E (3.0) BS02 dna ? N/A Q8UN00 38811740
    904406 8wuw:A (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    904407 8wuw:B (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    904408 8wuw:C (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    904409 8wuw:D (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    904410 8wuw:E (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    904411 8wuw:F (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    904412 8wuw:G (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    904413 8wuw:H (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    904414 8wuw:I (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    904415 8wuw:J (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    904416 8wuw:K (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    904417 8wuw:L (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    904418 8wuw:M (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    904419 8wuw:N (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    904420 8wux:A (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    904421 8wux:B (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    904422 8wux:C (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    904423 8wux:D (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    904424 8wux:E (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    904425 8wux:F (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    904426 8wux:G (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    904427 8wux:H (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    904428 8wux:I (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    904429 8wux:J (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    904430 8wux:K (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    904431 8wux:L (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    904432 8wux:M (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    904433 8wux:N (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    904434 8wuy:A (2.6) BS01 XBF ? GO:0003677 ... P22736 38232685
    904435 8wuz:A (2.9) BS01 XFU N/A N/A Q16740 N/A
    904436 8wuz:A (2.9) BS02 XFU N/A N/A Q16740 N/A
    904437 8wuz:B (2.9) BS01 XFU N/A N/A Q16740 N/A
    904438 8wuz:B (2.9) BS02 XFU N/A N/A Q16740 N/A
    904439 8wuz:C (2.9) BS01 XFU N/A N/A Q16740 N/A
    904440 8wuz:C (2.9) BS02 XFU N/A N/A Q16740 N/A
    904441 8wuz:D (2.9) BS01 XFU N/A N/A Q16740 N/A
    904442 8wuz:D (2.9) BS02 XFU N/A N/A Q16740 N/A
    904443 8wuz:E (2.9) BS01 XFU N/A N/A Q16740 N/A
    904444 8wuz:E (2.9) BS02 XFU N/A N/A Q16740 N/A
    904445 8wuz:F (2.9) BS01 XFU N/A N/A Q16740 N/A
    904446 8wuz:F (2.9) BS02 XFU N/A N/A Q16740 N/A
    904447 8wuz:G (2.9) BS01 XFU N/A N/A Q16740 N/A
    904448 8wuz:G (2.9) BS02 XFU N/A N/A Q16740 N/A
    904449 8wv1:0 (3.99) BS01 rna N/A GO:0005840 ... P80339 N/A
    904450 8wv1:0 (3.99) BS02 ZN N/A GO:0005840 ... P80339 N/A
    904451 8wv1:13 (3.99) BS01 rna N/A GO:0000049 ... P35871 N/A
    904452 8wv1:13 (3.99) BS02 rna N/A GO:0000049 ... P35871 N/A
    904453 8wv1:13 (3.99) BS03 ZN N/A GO:0000049 ... P35871 N/A
    904454 8wv1:2 (3.99) BS01 rna N/A GO:0005840 ... P80340 N/A
    904455 8wv1:3 (3.99) BS01 rna N/A GO:0003735 ... Q5SKU1 N/A
    904456 8wv1:4 (3.99) BS01 rna N/A GO:0005737 ... Q5SHR2 N/A
    904457 8wv1:4 (3.99) BS02 ZN N/A GO:0005737 ... Q5SHR2 N/A
    904458 8wv1:5 (3.99) BS01 rna N/A GO:0005840 ... P80339 N/A
    904459 8wv1:5 (3.99) BS02 ZN N/A GO:0005840 ... P80339 N/A
    904460 8wv1:6 (3.99) BS01 rna N/A GO:0000049 ... P35871 N/A
    904461 8wv1:6 (3.99) BS02 rna N/A GO:0000049 ... P35871 N/A
    904462 8wv1:6 (3.99) BS03 ZN N/A GO:0000049 ... P35871 N/A
    904463 8wv1:7 (3.99) BS01 rna N/A GO:0005840 ... P80340 N/A
    904464 8wv1:8 (3.99) BS01 rna N/A GO:0003735 ... Q5SKU1 N/A
    904465 8wv1:9 (3.99) BS01 rna N/A GO:0005737 ... Q5SHR2 N/A
    904466 8wv1:C (3.99) BS01 rna N/A GO:0002181 ... P60405 N/A
    904467 8wv1:D (3.99) BS01 rna N/A GO:0003735 ... Q5SHN8 N/A
    904468 8wv1:E (3.99) BS01 rna N/A GO:0003735 ... Q5SHN9 N/A
    904469 8wv1:F (3.99) BS01 rna N/A GO:0000049 ... Q5SHQ0 N/A
    904470 8wv1:F (3.99) BS02 rna N/A GO:0000049 ... Q5SHQ0 N/A
    904471 8wv1:G (3.99) BS01 rna N/A GO:0002181 ... P0DOY8 N/A
    904472 8wv1:H (3.99) BS01 rna N/A GO:0005840 ... Q5SLQ1 N/A
    904473 8wv1:I (3.99) BS01 rna N/A GO:0003729 ... P60488 N/A
    904474 8wv1:J (3.99) BS01 rna N/A GO:0003735 ... Q5SHP8 N/A
    904475 8wv1:K (3.99) BS01 rna N/A GO:0003735 ... Q5SHQ7 N/A
    904476 8wv1:L (3.99) BS01 rna N/A GO:0000049 ... P60489 N/A
    904477 8wv1:L (3.99) BS02 rna N/A GO:0000049 ... P60489 N/A
    904478 8wv1:M (3.99) BS01 rna N/A GO:0003735 ... Q9Z9H5 N/A
    904479 8wv1:N (3.99) BS01 rna N/A GO:0005737 ... Q5SHQ4 N/A
    904480 8wv1:N (3.99) BS02 rna N/A GO:0005737 ... Q5SHQ4 N/A
    904481 8wv1:O (3.99) BS01 rna N/A GO:0003735 ... P60490 N/A
    904482 8wv1:O (3.99) BS02 MG N/A GO:0003735 ... P60490 N/A
    904483 8wv1:P (3.99) BS01 rna N/A GO:0000027 ... P60491 N/A
    904484 8wv1:Q (3.99) BS01 rna N/A GO:0003735 ... P60492 N/A
    904485 8wv1:R (3.99) BS01 rna N/A GO:0003735 ... Q5SHP3 N/A
    904486 8wv1:S (3.99) BS01 rna N/A GO:0005840 ... Q5SHP0 N/A
    904487 8wv1:S (3.99) BS02 MG N/A GO:0005840 ... Q5SHP0 N/A
    904488 8wv1:T (3.99) BS01 rna N/A GO:0005840 ... Q5SHP9 N/A
    904489 8wv1:T (3.99) BS02 ZN N/A GO:0005840 ... Q5SHP9 N/A
    904490 8wv1:U (3.99) BS01 rna N/A GO:0003723 ... Q5SHZ1 N/A
    904491 8wv1:U (3.99) BS02 rna N/A GO:0003723 ... Q5SHZ1 N/A
    904492 8wv1:V (3.99) BS01 rna N/A GO:0003735 ... P60493 N/A
    904493 8wv1:V (3.99) BS02 rna N/A GO:0003735 ... P60493 N/A
    904494 8wv1:W (3.99) BS01 rna N/A GO:0005840 ... P60494 N/A
    904495 8wv1:X (3.99) BS01 rna N/A GO:0005840 ... Q5SHP6 N/A
    904496 8wv1:Y (3.99) BS01 rna N/A GO:0005840 ... Q5SHQ6 N/A
    904497 8wv1:Y (3.99) BS02 rna N/A GO:0005840 ... Q5SHQ6 N/A
    904498 8wv1:Z (3.99) BS01 rna N/A GO:0005840 ... Q5SJE1 N/A
    904499 8wv1:c (3.99) BS01 rna N/A GO:0002181 ... P60405 N/A
    904500 8wv1:c (3.99) BS02 MG N/A GO:0002181 ... P60405 N/A
    904501 8wv1:d (3.99) BS01 rna N/A GO:0003735 ... Q5SHN8 N/A
    904502 8wv1:d (3.99) BS02 MG N/A GO:0003735 ... Q5SHN8 N/A
    904503 8wv1:e (3.99) BS01 rna N/A GO:0003735 ... Q5SHN9 N/A
    904504 8wv1:f (3.99) BS01 rna N/A GO:0000049 ... Q5SHQ0 N/A
    904505 8wv1:f (3.99) BS02 rna N/A GO:0000049 ... Q5SHQ0 N/A
    904506 8wv1:g (3.99) BS01 rna N/A GO:0002181 ... P0DOY8 N/A
    904507 8wv1:h (3.99) BS01 rna N/A GO:0005840 ... Q5SLQ1 N/A
    904508 8wv1:i (3.99) BS01 rna N/A GO:0003729 ... P60488 N/A
    904509 8wv1:j (3.99) BS01 rna N/A GO:0003735 ... Q5SHP8 N/A
    904510 8wv1:j (3.99) BS02 MG N/A GO:0003735 ... Q5SHP8 N/A
    904511 8wv1:k (3.99) BS01 rna N/A GO:0003735 ... Q5SHQ7 N/A
    904512 8wv1:k (3.99) BS02 MG N/A GO:0003735 ... Q5SHQ7 N/A
    904513 8wv1:l (3.99) BS01 rna N/A GO:0000049 ... P60489 N/A
    904514 8wv1:l (3.99) BS02 rna N/A GO:0000049 ... P60489 N/A
    904515 8wv1:m (3.99) BS01 rna N/A GO:0003735 ... Q9Z9H5 N/A
    904516 8wv1:m (3.99) BS02 MG N/A GO:0003735 ... Q9Z9H5 N/A
    904517 8wv1:n (3.99) BS01 rna N/A GO:0005737 ... Q5SHQ4 N/A
    904518 8wv1:n (3.99) BS02 rna N/A GO:0005737 ... Q5SHQ4 N/A
    904519 8wv1:o (3.99) BS01 rna N/A GO:0003735 ... P60490 N/A
    904520 8wv1:p (3.99) BS01 rna N/A GO:0000027 ... P60491 N/A
    904521 8wv1:q (3.99) BS01 rna N/A GO:0003735 ... P60492 N/A
    904522 8wv1:r (3.99) BS01 rna N/A GO:0003735 ... Q5SHP3 N/A
    904523 8wv1:s (3.99) BS01 rna N/A GO:0005840 ... Q5SHP0 N/A
    904524 8wv1:t (3.99) BS01 rna N/A GO:0005840 ... Q5SHP9 N/A
    904525 8wv1:t (3.99) BS02 ZN N/A GO:0005840 ... Q5SHP9 N/A
    904526 8wv1:u (3.99) BS01 rna N/A GO:0003723 ... Q5SHZ1 N/A
    904527 8wv1:u (3.99) BS02 rna N/A GO:0003723 ... Q5SHZ1 N/A
    904528 8wv1:v (3.99) BS01 rna N/A GO:0003735 ... P60493 N/A
    904529 8wv1:w (3.99) BS01 rna N/A GO:0005840 ... P60494 N/A
    904530 8wv1:x (3.99) BS01 rna N/A GO:0005840 ... Q5SHP6 N/A
    904531 8wv1:y (3.99) BS01 rna N/A GO:0005840 ... Q5SHQ6 N/A
    904532 8wv1:y (3.99) BS02 rna N/A GO:0005840 ... Q5SHQ6 N/A
    904533 8wv1:y (3.99) BS03 MG N/A GO:0005840 ... Q5SHQ6 N/A
    904534 8wv1:z (3.99) BS01 rna N/A GO:0005840 ... Q5SJE1 N/A
    904535 8wv1:z (3.99) BS02 ZN N/A GO:0005840 ... Q5SJE1 N/A
    904536 8wv4:A (3.3) BS01 CA N/A N/A P02741 38935342
    904537 8wv4:A (3.3) BS02 CA N/A N/A P02741 38935342
    904538 8wv4:B (3.3) BS01 CA N/A N/A P02741 38935342
    904539 8wv4:B (3.3) BS02 CA N/A N/A P02741 38935342
    904540 8wv4:C (3.3) BS01 CA N/A N/A P02741 38935342
    904541 8wv4:C (3.3) BS02 CA N/A N/A P02741 38935342
    904542 8wv4:D (3.3) BS01 CA N/A N/A P02741 38935342
    904543 8wv4:D (3.3) BS02 CA N/A N/A P02741 38935342
    904544 8wv4:E (3.3) BS01 CA N/A N/A P02741 38935342
    904545 8wv4:E (3.3) BS02 CA N/A N/A P02741 38935342
    904546 8wv5:A (3.5) BS01 CA N/A N/A P02741 38935342
    904547 8wv5:A (3.5) BS02 CA N/A N/A P02741 38935342
    904548 8wv5:B (3.5) BS01 CA N/A N/A P02741 38935342
    904549 8wv5:B (3.5) BS02 CA N/A N/A P02741 38935342
    904550 8wv5:C (3.5) BS01 CA N/A N/A P02741 38935342
    904551 8wv5:C (3.5) BS02 CA N/A N/A P02741 38935342
    904552 8wv5:D (3.5) BS01 CA N/A N/A P02741 38935342
    904553 8wv5:D (3.5) BS02 CA N/A N/A P02741 38935342
    904554 8wv5:E (3.5) BS01 CA N/A N/A P02741 38935342
    904555 8wv5:E (3.5) BS02 CA N/A N/A P02741 38935342
    904556 8wv5:F (3.5) BS01 CA N/A N/A P02741 38935342
    904557 8wv5:F (3.5) BS02 CA N/A N/A P02741 38935342
    904558 8wv5:G (3.5) BS01 CA N/A N/A P02741 38935342
    904559 8wv5:G (3.5) BS02 CA N/A N/A P02741 38935342
    904560 8wv5:H (3.5) BS01 CA N/A N/A P02741 38935342
    904561 8wv5:H (3.5) BS02 CA N/A N/A P02741 38935342
    904562 8wv5:I (3.5) BS01 CA N/A N/A P02741 38935342
    904563 8wv5:I (3.5) BS02 CA N/A N/A P02741 38935342
    904564 8wv5:J (3.5) BS01 CA N/A N/A P02741 38935342
    904565 8wv5:J (3.5) BS02 CA N/A N/A P02741 38935342
    904566 8wv8:A (2.93) BS01 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 38803331
    904567 8wv8:A (2.93) BS02 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 38803331
    904568 8wv8:B (2.93) BS01 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 38803331
    904569 8wv8:B (2.93) BS02 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 38803331
    904570 8wv8:B (2.93) BS03 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 38803331
    904571 8wv8:B (2.93) BS04 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 38803331
    904572 8wvb:A (2.5) BS01 FAD 1.14.13.- GO:0004497 ... B5M9L6 38069118
    904573 8wvb:B (2.5) BS01 FAD 1.14.13.- GO:0004497 ... B5M9L6 38069118
    904574 8wvd:A (1.66) BS01 UD1 N/A GO:0008194 ... K7NBW3 38867497
    904575 8wve:A (2.729) BS01 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 38803331
    904576 8wve:A (2.729) BS02 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 38803331
    904577 8wve:A (2.729) BS03 MG 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 38803331
    904578 8wve:B (2.729) BS01 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 38803331
    904579 8wve:B (2.729) BS02 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 38803331
    904580 8wve:B (2.729) BS03 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 38803331
    904581 8wve:B (2.729) BS04 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 38803331
    904582 8wve:B (2.729) BS05 MG 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 38803331
    904583 8wvf:A (3.757) BS01 FAD 1.14.13.- GO:0004497 ... B5M9L6 38069118
    904584 8wvf:B (3.757) BS01 FAD 1.14.13.- GO:0004497 ... B5M9L6 38069118
    904585 8wvg:A (3.18) BS01 XEQ N/A GO:0001975 ... Q05940 39284862
    904586 8wvr:A (2.05) BS01 FE N/A GO:0046872 ... E4N6B3 N/A
    904587 8wvr:A (2.05) BS02 FE N/A GO:0046872 ... E4N6B3 N/A
    904588 8wvr:B (2.05) BS01 FE N/A GO:0046872 ... E4N6B3 N/A
    904589 8wvr:B (2.05) BS02 FE N/A GO:0046872 ... E4N6B3 N/A
    904590 8wvr:C (2.05) BS01 XBN N/A GO:0046872 ... E4N6B3 N/A
    904591 8wvr:C (2.05) BS02 FE N/A GO:0046872 ... E4N6B3 N/A
    904592 8wvr:C (2.05) BS03 FE N/A GO:0046872 ... E4N6B3 N/A
    904593 8wvr:D (2.05) BS01 FE N/A GO:0046872 ... E4N6B3 N/A
    904594 8wvr:D (2.05) BS02 FE N/A GO:0046872 ... E4N6B3 N/A
    904595 8wvt:A (1.75) BS01 FAD N/A GO:0004497 ... B5M9L6 N/A
    904596 8wvt:A (1.75) BS02 X9E N/A GO:0004497 ... B5M9L6 N/A
    904597 8wvt:B (1.75) BS01 FAD N/A GO:0004497 ... B5M9L6 N/A
    904598 8wvt:B (1.75) BS02 A1LWM N/A GO:0004497 ... B5M9L6 N/A
    904599 8wvz:A (3.15) BS01 dna N/A GO:0004386 ... A0A2X0TKI6 N/A
    904600 8wvz:A (3.15) BS02 ADP N/A GO:0004386 ... A0A2X0TKI6 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).