SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 4513 4514 4515 4516 4517 4518 4519 4520 4521 4522 4523 4524 4525 4526 4527 4528 4529 4530 4531 4532 4533 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    904401 8vup:q (3.4) BS01 rna N/A GO:0000028 ... C3SQR7 N/A
    904402 8vup:r (3.4) BS01 rna N/A GO:0000049 ... S1P5F8 N/A
    904403 8vup:s (3.4) BS01 rna N/A GO:0003735 ... A0A8S0FJJ0 N/A
    904404 8vup:t (3.4) BS01 rna N/A GO:0003735 ... N/A N/A
    904405 8vup:t (3.4) BS02 rna N/A GO:0003735 ... N/A N/A
    904406 8vup:u (3.4) BS01 rna N/A GO:0000028 ... C3SYP2 N/A
    904407 8vup:v (3.4) BS01 rna N/A GO:0003735 ... N/A N/A
    904408 8vup:w (3.4) BS01 rna N/A GO:0003735 ... E0J6I2 N/A
    904409 8vup:x (3.4) BS01 rna N/A GO:0003723 ... N/A N/A
    904410 8vup:y (3.4) BS01 rna N/A GO:0000028 ... C3TRH7 N/A
    904411 8vup:z (3.4) BS01 rna N/A GO:0000028 ... P68679 N/A
    904412 8vuw:A (3.19) BS01 PGW ? GO:0004888 ... P0C7B7 36385237
    904413 8vuw:A (3.19) BS02 DHL ? GO:0004888 ... P0C7B7 36385237
    904414 8vuw:B (3.19) BS01 PGW ? GO:0004888 ... P0C7B7 36385237
    904415 8vuw:B (3.19) BS02 DHL ? GO:0004888 ... P0C7B7 36385237
    904416 8vuw:C (3.19) BS01 PGW ? GO:0004888 ... P0C7B7 36385237
    904417 8vuw:C (3.19) BS02 DHL ? GO:0004888 ... P0C7B7 36385237
    904418 8vuw:D (3.19) BS01 PGW ? GO:0004888 ... P0C7B7 36385237
    904419 8vuw:D (3.19) BS02 DHL ? GO:0004888 ... P0C7B7 36385237
    904420 8vuw:E (3.19) BS01 PGW ? GO:0004888 ... P0C7B7 36385237
    904421 8vuw:E (3.19) BS02 DHL ? GO:0004888 ... P0C7B7 36385237
    904422 8vux:B (3.54) BS01 1SY N/A GO:0005524 ... P33527 39765229
    904423 8vv0:A (3.1) BS01 MAN N/A GO:0004888 ... O00591 39642883
    904424 8vv0:A (3.1) BS02 ABU N/A GO:0004888 ... O00591 39642883
    904425 8vv0:B (3.1) BS01 MAN N/A GO:0004888 ... O00591 39642883
    904426 8vv0:B (3.1) BS02 ABU N/A GO:0004888 ... O00591 39642883
    904427 8vv0:C (3.1) BS01 MAN N/A GO:0004888 ... O00591 39642883
    904428 8vv0:C (3.1) BS02 ABU N/A GO:0004888 ... O00591 39642883
    904429 8vv0:D (3.1) BS01 MAN N/A GO:0004888 ... O00591 39642883
    904430 8vv0:D (3.1) BS02 ABU N/A GO:0004888 ... O00591 39642883
    904431 8vv0:E (3.1) BS01 MAN N/A GO:0004888 ... O00591 39642883
    904432 8vv0:E (3.1) BS02 ABU N/A GO:0004888 ... O00591 39642883
    904433 8vv1:A (2.196) BS01 A1AEA N/A N/A P03372 N/A
    904434 8vv1:B (2.196) BS01 A1AEA N/A N/A P03372 N/A
    904435 8vv2:A (2.6) BS01 rna N/A GO:0000287 ... Q05B79 N/A
    904436 8vv3:A (2.61) BS01 SOE ? GO:0001582 ... B3GTD7 38447670
    904437 8vv3:B (2.61) BS01 SOE ? GO:0001582 ... B3GTD7 38447670
    904438 8vv3:C (2.61) BS01 SOE ? GO:0001582 ... B3GTD7 38447670
    904439 8vv3:D (2.61) BS01 SOE ? GO:0001582 ... B3GTD7 38447670
    904440 8vv4:B (3.4) BS01 rna N/A GO:0000027 ... P60422 N/A
    904441 8vv4:C (3.4) BS01 rna N/A GO:0000027 ... P60438 N/A
    904442 8vv4:D (3.4) BS01 rna N/A GO:0003735 ... A1AGK6 N/A
    904443 8vv4:E (3.4) BS01 rna N/A GO:0003735 ... N/A N/A
    904444 8vv4:E (3.4) BS02 rna N/A GO:0003735 ... N/A N/A
    904445 8vv4:E (3.4) BS03 rna N/A GO:0003735 ... N/A N/A
    904446 8vv4:F (3.4) BS01 rna N/A GO:0002181 ... C3SR17 N/A
    904447 8vv4:G (3.4) BS01 rna N/A GO:0003735 ... C3SFP2 N/A
    904448 8vv4:J (3.4) BS01 rna N/A GO:0003735 ... N/A N/A
    904449 8vv4:K (3.4) BS01 rna N/A GO:0003735 ... S1NW45 N/A
    904450 8vv4:L (3.4) BS01 rna N/A GO:0003735 ... A0A037Y8L6 N/A
    904451 8vv4:M (3.4) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    904452 8vv4:M (3.4) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    904453 8vv4:N (3.4) BS01 rna N/A GO:0003735 ... C3SR72 N/A
    904454 8vv4:O (3.4) BS01 rna N/A GO:0003735 ... N/A N/A
    904455 8vv4:O (3.4) BS02 rna N/A GO:0003735 ... N/A N/A
    904456 8vv4:P (3.4) BS01 rna N/A GO:0003735 ... N/A N/A
    904457 8vv4:P (3.4) BS02 rna N/A GO:0003735 ... N/A N/A
    904458 8vv4:Q (3.4) BS01 rna N/A GO:0000027 ... B7MAS6 N/A
    904459 8vv4:R (3.4) BS01 rna N/A GO:0003723 ... C3SSG2 N/A
    904460 8vv4:S (3.4) BS01 rna N/A GO:0002181 ... P61175 N/A
    904461 8vv4:T (3.4) BS01 rna N/A GO:0003735 ... N/A N/A
    904462 8vv4:U (3.4) BS01 rna N/A GO:0003723 ... N/A N/A
    904463 8vv4:V (3.4) BS01 rna N/A GO:0003735 ... N/A N/A
    904464 8vv4:W (3.4) BS01 rna N/A GO:0003735 ... C3SSG7 N/A
    904465 8vv4:W (3.4) BS02 rna N/A GO:0003735 ... C3SSG7 N/A
    904466 8vv4:X (3.4) BS01 rna N/A GO:0003735 ... A0A1X3JA73 N/A
    904467 8vv4:Y (3.4) BS01 rna N/A GO:0003735 ... N/A N/A
    904468 8vv4:Z (3.4) BS01 rna N/A GO:0003735 ... C3SR32 N/A
    904469 8vv4:a (3.4) BS01 rna N/A GO:0002181 ... P0A7M9 N/A
    904470 8vv4:b (3.4) BS01 rna N/A GO:0003735 ... N/A N/A
    904471 8vv4:c (3.4) BS01 rna N/A GO:0003735 ... C3SME7 N/A
    904472 8vv4:d (3.4) BS01 rna N/A GO:0003735 ... B7MGC4 N/A
    904473 8vv4:e (3.4) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    904474 8vv4:f (3.4) BS01 rna N/A GO:0003735 ... A0A0E2L017 N/A
    904475 8vv4:g (3.4) BS01 rna N/A GO:0003735 ... C3TPN2 N/A
    904476 8vv4:h (3.4) BS01 rna N/A GO:0003676 ... B7MCS9 N/A
    904477 8vv4:i (3.4) BS01 rna N/A GO:0000028 ... P0A7V8 N/A
    904478 8vv4:j (3.4) BS01 rna N/A GO:0000028 ... P0A7W1 N/A
    904479 8vv4:k (3.4) BS01 rna N/A GO:0002181 ... P02358 N/A
    904480 8vv4:l (3.4) BS01 rna N/A GO:0000028 ... P02359 N/A
    904481 8vv4:m (3.4) BS01 rna N/A GO:0003735 ... N/A N/A
    904482 8vv4:n (3.4) BS01 rna N/A GO:0000028 ... C3SRY2 N/A
    904483 8vv4:o (3.4) BS01 rna N/A GO:0003723 ... N/A N/A
    904484 8vv4:p (3.4) BS01 rna N/A GO:0003735 ... B7MCR3 N/A
    904485 8vv4:q (3.4) BS01 rna N/A GO:0000028 ... C3SQR7 N/A
    904486 8vv4:r (3.4) BS01 rna N/A GO:0000049 ... A0A7U9IV78 N/A
    904487 8vv4:s (3.4) BS01 rna N/A GO:0003735 ... A0A2X1PQW4 N/A
    904488 8vv4:t (3.4) BS01 rna N/A GO:0000028 ... C3SSQ7 N/A
    904489 8vv4:t (3.4) BS02 rna N/A GO:0000028 ... C3SSQ7 N/A
    904490 8vv4:u (3.4) BS01 rna N/A GO:0000028 ... C3SYP2 N/A
    904491 8vv4:v (3.4) BS01 rna N/A GO:0000028 ... C3SQY7 N/A
    904492 8vv4:w (3.4) BS01 rna N/A GO:0003735 ... A0A0E2KXL3 N/A
    904493 8vv4:x (3.4) BS01 rna N/A GO:0003723 ... N/A N/A
    904494 8vv4:y (3.4) BS01 rna N/A GO:0000028 ... C3TRH7 N/A
    904495 8vv4:z (3.4) BS01 rna N/A GO:0003735 ... A0A0E2L2J1 N/A
    904496 8vv5:A (1.84) BS01 CU N/A N/A Q2YK40 N/A
    904497 8vv5:B (1.84) BS01 CU N/A N/A Q2YK40 N/A
    904498 8vv5:C (1.84) BS01 CU N/A N/A Q2YK40 N/A
    904499 8vv5:D (1.84) BS01 CU N/A N/A Q2YK40 N/A
    904500 8vv8:A (2.0) BS01 SAM N/A GO:0002039 ... Q96KQ7 38714351
    904501 8vv8:A (2.0) BS02 A1AEB N/A GO:0002039 ... Q96KQ7 38714351
    904502 8vv8:A (2.0) BS03 ZN N/A GO:0002039 ... Q96KQ7 38714351
    904503 8vv8:A (2.0) BS04 ZN N/A GO:0002039 ... Q96KQ7 38714351
    904504 8vv8:A (2.0) BS05 ZN N/A GO:0002039 ... Q96KQ7 38714351
    904505 8vv8:A (2.0) BS06 ZN N/A GO:0002039 ... Q96KQ7 38714351
    904506 8vv8:B (2.0) BS01 SAM N/A GO:0002039 ... Q96KQ7 38714351
    904507 8vv8:B (2.0) BS02 A1AEB N/A GO:0002039 ... Q96KQ7 38714351
    904508 8vv8:B (2.0) BS03 ZN N/A GO:0002039 ... Q96KQ7 38714351
    904509 8vv8:B (2.0) BS04 ZN N/A GO:0002039 ... Q96KQ7 38714351
    904510 8vv8:B (2.0) BS05 ZN N/A GO:0002039 ... Q96KQ7 38714351
    904511 8vv8:B (2.0) BS06 ZN N/A GO:0002039 ... Q96KQ7 38714351
    904512 8vvd:A (3.0) BS01 rna N/A GO:0000287 ... Q05B79 N/A
    904513 8vve:A (3.3) BS01 A1AD6 N/A GO:0004930 ... P41145 39775170
    904514 8vvf:A (3.0) BS01 JDC N/A GO:0004930 ... P41145 39775170
    904515 8vvg:A (3.3) BS01 A1AD5 N/A GO:0004930 ... P41145 39775170
    904516 8vvl:L (1.8) BS01 CO N/A N/A N/A 39002130
    904517 8vvp:A (2.9) BS01 rna N/A GO:0002181 ... G1TT27 N/A
    904518 8vvp:A (2.9) BS02 rna N/A GO:0002181 ... G1TT27 N/A
    904519 8vvp:A (2.9) BS03 MG N/A GO:0002181 ... G1TT27 N/A
    904520 8vvp:AA (2.9) BS01 rna N/A GO:0002181 ... G1SGR6 N/A
    904521 8vvp:AB (2.9) BS01 rna N/A GO:0000028 ... G1TLT8 N/A
    904522 8vvp:AC (2.9) BS01 rna N/A GO:0003729 ... G1TFE8 N/A
    904523 8vvp:AC (2.9) BS02 ZN N/A GO:0003729 ... G1TFE8 N/A
    904524 8vvp:B (2.9) BS01 rna N/A GO:0003723 ... G1TL06 N/A
    904525 8vvp:BA (2.9) BS01 rna N/A GO:0003723 ... G1TDL2 N/A
    904526 8vvp:BB (2.9) BS01 rna N/A GO:0003735 ... G1SS70 N/A
    904527 8vvp:BC (2.9) BS01 rna N/A GO:0003735 ... G1TZ76 N/A
    904528 8vvp:C (2.9) BS01 rna N/A GO:0003735 ... G1SVW5 N/A
    904529 8vvp:C (2.9) BS02 rna N/A GO:0003735 ... G1SVW5 N/A
    904530 8vvp:CA (2.9) BS01 rna N/A GO:0002181 ... G1SHG0 N/A
    904531 8vvp:CB (2.9) BS01 rna N/A GO:0003723 ... N/A N/A
    904532 8vvp:CC (2.9) BS01 rna N/A GO:0000028 ... G1TIB4 N/A
    904533 8vvp:D (2.9) BS01 rna N/A GO:0000027 ... P19949 N/A
    904534 8vvp:D (2.9) BS02 rna N/A GO:0000027 ... P19949 N/A
    904535 8vvp:DA (2.9) BS01 rna N/A GO:0003735 ... G1TUN8 N/A
    904536 8vvp:DB (2.9) BS01 rna N/A GO:0003723 ... G1TNM3 N/A
    904537 8vvp:DC (2.9) BS01 rna N/A GO:0002181 ... G1U7M4 N/A
    904538 8vvp:DC (2.9) BS02 ZN N/A GO:0002181 ... G1U7M4 N/A
    904539 8vvp:E (2.9) BS01 rna N/A GO:0000027 ... G1SKF7 N/A
    904540 8vvp:EA (2.9) BS01 rna N/A GO:0003735 ... G1SF08 N/A
    904541 8vvp:EB (2.9) BS01 rna N/A GO:0003723 ... G1TK17 N/A
    904542 8vvp:EC (2.9) BS01 rna N/A GO:0003735 ... G1T8A2 N/A
    904543 8vvp:F (2.9) BS01 rna N/A GO:0000463 ... G1SV32 N/A
    904544 8vvp:F (2.9) BS02 rna N/A GO:0000463 ... G1SV32 N/A
    904545 8vvp:FA (2.9) BS01 rna N/A GO:0003735 ... G1TXG5 N/A
    904546 8vvp:FA (2.9) BS02 ZN N/A GO:0003735 ... G1TXG5 N/A
    904547 8vvp:FB (2.9) BS01 rna N/A GO:0003723 ... G1TFM5 N/A
    904548 8vvp:FB (2.9) BS02 rna N/A GO:0003723 ... G1TFM5 N/A
    904549 8vvp:FC (2.9) BS01 rna N/A GO:0003735 ... G1SK22 N/A
    904550 8vvp:FC (2.9) BS02 ZN N/A GO:0003735 ... G1SK22 N/A
    904551 8vvp:G (2.9) BS01 rna N/A GO:0003723 ... G1STW0 N/A
    904552 8vvp:G (2.9) BS02 rna N/A GO:0003723 ... G1STW0 N/A
    904553 8vvp:GA (2.9) BS01 rna N/A GO:0000463 ... G1SIT5 N/A
    904554 8vvp:GA (2.9) BS02 rna N/A GO:0000463 ... G1SIT5 N/A
    904555 8vvp:GB (2.9) BS01 rna N/A GO:0003735 ... G1TM55 N/A
    904556 8vvp:GC (2.9) BS01 rna N/A GO:0001891 ... G1SJB4 N/A
    904557 8vvp:H (2.9) BS01 rna N/A GO:0002181 ... G1SWI6 N/A
    904558 8vvp:HA (2.9) BS01 rna N/A GO:0003735 ... G1TTQ5 N/A
    904559 8vvp:HB (2.9) BS01 rna N/A GO:0003735 ... G1SVB0 N/A
    904560 8vvp:HC (2.9) BS01 rna N/A GO:0003746 ... P68105 N/A
    904561 8vvp:HC (2.9) BS02 rna N/A GO:0003746 ... P68105 N/A
    904562 8vvp:HC (2.9) BS03 peptide N/A GO:0003746 ... P68105 N/A
    904563 8vvp:HC (2.9) BS04 5GP N/A GO:0003746 ... P68105 N/A
    904564 8vvp:HC (2.9) BS05 GTP N/A GO:0003746 ... P68105 N/A
    904565 8vvp:HC (2.9) BS06 MG N/A GO:0003746 ... P68105 N/A
    904566 8vvp:HC (2.9) BS07 SER N/A GO:0003746 ... P68105 N/A
    904567 8vvp:I (2.9) BS01 rna N/A GO:0003735 ... B7NZQ2 N/A
    904568 8vvp:I (2.9) BS02 rna N/A GO:0003735 ... B7NZQ2 N/A
    904569 8vvp:IA (2.9) BS01 rna N/A GO:0002181 ... U3KPD5 N/A
    904570 8vvp:IA (2.9) BS02 rna N/A GO:0002181 ... U3KPD5 N/A
    904571 8vvp:IA (2.9) BS03 ZN N/A GO:0002181 ... U3KPD5 N/A
    904572 8vvp:IB (2.9) BS01 rna N/A GO:0003735 ... G1TJW1 N/A
    904573 8vvp:IB (2.9) BS02 rna N/A GO:0003735 ... G1TJW1 N/A
    904574 8vvp:J (2.9) BS01 rna N/A GO:0003735 ... G1TUB8 N/A
    904575 8vvp:J (2.9) BS02 rna N/A GO:0003735 ... G1TUB8 N/A
    904576 8vvp:J (2.9) BS03 rna N/A GO:0003735 ... G1TUB8 N/A
    904577 8vvp:JA (2.9) BS01 rna N/A GO:0003735 ... G1U001 N/A
    904578 8vvp:JB (2.9) BS01 rna N/A GO:0003723 ... B7NZS8 N/A
    904579 8vvp:K (2.9) BS01 rna N/A GO:0003735 ... N/A N/A
    904580 8vvp:K (2.9) BS02 rna N/A GO:0003735 ... N/A N/A
    904581 8vvp:KA (2.9) BS01 rna N/A GO:0003735 ... G1TTN1 N/A
    904582 8vvp:KA (2.9) BS02 rna N/A GO:0003735 ... G1TTN1 N/A
    904583 8vvp:KB (2.9) BS01 rna N/A GO:0003723 ... G1TPV3 N/A
    904584 8vvp:L (2.9) BS01 rna N/A GO:0003723 ... G1SZ12 N/A
    904585 8vvp:LA (2.9) BS01 rna N/A GO:0003735 ... N/A N/A
    904586 8vvp:LA (2.9) BS02 ZN N/A GO:0003735 ... N/A N/A
    904587 8vvp:LB (2.9) BS01 rna N/A GO:0003735 ... G1TRM4 N/A
    904588 8vvp:LB (2.9) BS02 MG N/A GO:0003735 ... G1TRM4 N/A
    904589 8vvp:M (2.9) BS01 rna N/A GO:0002181 ... G1T0C1 N/A
    904590 8vvp:M (2.9) BS02 rna N/A GO:0002181 ... G1T0C1 N/A
    904591 8vvp:MB (2.9) BS01 rna N/A GO:0003735 ... G1SFR8 N/A
    904592 8vvp:N (2.9) BS01 rna N/A GO:0003735 ... N/A N/A
    904593 8vvp:NA (2.9) BS01 rna N/A GO:0003735 ... G1T040 N/A
    904594 8vvp:NA (2.9) BS02 rna N/A GO:0003735 ... G1T040 N/A
    904595 8vvp:NA (2.9) BS03 rna N/A GO:0003735 ... G1T040 N/A
    904596 8vvp:NA (2.9) BS04 ZN N/A GO:0003735 ... G1T040 N/A
    904597 8vvp:NB (2.9) BS01 rna N/A GO:0003735 ... G1SP51 N/A
    904598 8vvp:O (2.9) BS01 rna N/A GO:0002181 ... G1SCJ6 N/A
    904599 8vvp:O (2.9) BS02 rna N/A GO:0002181 ... G1SCJ6 N/A
    904600 8vvp:OA (2.9) BS01 rna N/A GO:0003735 ... G1SY53 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).