SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    904601 8vvp:OA (2.9) BS02 ZN N/A GO:0003735 ... G1SY53 N/A
    904602 8vvp:OB (2.9) BS01 rna N/A GO:0003735 ... G1T1F0 N/A
    904603 8vvp:P (2.9) BS01 rna N/A GO:0003735 ... N/A N/A
    904604 8vvp:PA (2.9) BS01 rna N/A GO:0003735 ... G1U7L1 N/A
    904605 8vvp:PB (2.9) BS01 rna N/A GO:0000028 ... G1U0Q2 N/A
    904606 8vvp:PB (2.9) BS02 rna N/A GO:0000028 ... G1U0Q2 N/A
    904607 8vvp:Q (2.9) BS01 rna N/A GO:0003723 ... G1TJR3 N/A
    904608 8vvp:Q (2.9) BS02 rna N/A GO:0003723 ... G1TJR3 N/A
    904609 8vvp:QB (2.9) BS01 rna N/A GO:0000462 ... G1SGX4 N/A
    904610 8vvp:R (2.9) BS01 rna N/A GO:0003735 ... N/A N/A
    904611 8vvp:R (2.9) BS02 rna N/A GO:0003735 ... N/A N/A
    904612 8vvp:RA (2.9) BS01 rna N/A GO:0003735 ... G1SMR7 N/A
    904613 8vvp:RB (2.9) BS01 rna N/A GO:0003735 ... G1TU13 N/A
    904614 8vvp:S (2.9) BS01 rna N/A GO:0003735 ... G1SHQ2 N/A
    904615 8vvp:S (2.9) BS02 rna N/A GO:0003735 ... G1SHQ2 N/A
    904616 8vvp:SB (2.9) BS01 rna N/A GO:0003676 ... G1TPG3 N/A
    904617 8vvp:T (2.9) BS01 rna N/A GO:0002181 ... G1TSG1 N/A
    904618 8vvp:TB (2.9) BS01 rna N/A GO:0000028 ... G1TN62 N/A
    904619 8vvp:U (2.9) BS01 rna N/A GO:0000122 ... G1T6D1 N/A
    904620 8vvp:U (2.9) BS02 rna N/A GO:0000122 ... G1T6D1 N/A
    904621 8vvp:UB (2.9) BS01 rna N/A GO:0003723 ... G1SIZ2 N/A
    904622 8vvp:V (2.9) BS01 rna N/A GO:0003735 ... N/A N/A
    904623 8vvp:V (2.9) BS02 rna N/A GO:0003735 ... N/A N/A
    904624 8vvp:W (2.9) BS01 rna N/A GO:0003735 ... G1SE76 N/A
    904625 8vvp:W (2.9) BS02 rna N/A GO:0003735 ... G1SE76 N/A
    904626 8vvp:WB (2.9) BS01 rna N/A GO:0003735 ... G1TG89 N/A
    904627 8vvp:X (2.9) BS01 rna N/A GO:0003723 ... G1SQH0 N/A
    904628 8vvp:X (2.9) BS02 rna N/A GO:0003723 ... G1SQH0 N/A
    904629 8vvp:XB (2.9) BS01 rna N/A GO:0003735 ... G1SZ47 N/A
    904630 8vvp:Y (2.9) BS01 rna N/A GO:0002181 ... G1TXF6 N/A
    904631 8vvp:YB (2.9) BS01 rna N/A GO:0003735 ... G1T3D8 N/A
    904632 8vvp:Z (2.9) BS01 rna N/A GO:0003735 ... G1SNY0 N/A
    904633 8vvp:ZB (2.9) BS01 rna N/A GO:0003735 ... G1TDB3 N/A
    904634 8vvp:b (2.9) BS01 rna N/A GO:0000027 ... G1SPK4 N/A
    904635 8vvq:A (2.7) BS01 rna N/A GO:0002181 ... G1TT27 N/A
    904636 8vvq:A (2.7) BS02 rna N/A GO:0002181 ... G1TT27 N/A
    904637 8vvq:A (2.7) BS03 MG N/A GO:0002181 ... G1TT27 N/A
    904638 8vvq:AA (2.7) BS01 rna N/A GO:0002181 ... G1SGR6 N/A
    904639 8vvq:AB (2.7) BS01 rna N/A GO:0000028 ... G1TLT8 N/A
    904640 8vvq:AC (2.7) BS01 rna N/A GO:0003729 ... G1TFE8 N/A
    904641 8vvq:AC (2.7) BS02 ZN N/A GO:0003729 ... G1TFE8 N/A
    904642 8vvq:B (2.7) BS01 rna N/A GO:0003723 ... G1TL06 N/A
    904643 8vvq:BA (2.7) BS01 rna N/A GO:0003723 ... G1TDL2 N/A
    904644 8vvq:BB (2.7) BS01 rna N/A GO:0003735 ... G1SS70 N/A
    904645 8vvq:BC (2.7) BS01 rna N/A GO:0003735 ... G1TZ76 N/A
    904646 8vvq:C (2.7) BS01 rna N/A GO:0003735 ... G1SVW5 N/A
    904647 8vvq:C (2.7) BS02 rna N/A GO:0003735 ... G1SVW5 N/A
    904648 8vvq:CA (2.7) BS01 rna N/A GO:0002181 ... G1SHG0 N/A
    904649 8vvq:CB (2.7) BS01 rna N/A GO:0003723 ... N/A N/A
    904650 8vvq:CC (2.7) BS01 rna N/A GO:0000028 ... G1TIB4 N/A
    904651 8vvq:D (2.7) BS01 rna N/A GO:0000027 ... P19949 N/A
    904652 8vvq:D (2.7) BS02 rna N/A GO:0000027 ... P19949 N/A
    904653 8vvq:DA (2.7) BS01 rna N/A GO:0003735 ... G1TUN8 N/A
    904654 8vvq:DB (2.7) BS01 rna N/A GO:0003723 ... G1TNM3 N/A
    904655 8vvq:DC (2.7) BS01 rna N/A GO:0002181 ... G1U7M4 N/A
    904656 8vvq:DC (2.7) BS02 ZN N/A GO:0002181 ... G1U7M4 N/A
    904657 8vvq:E (2.7) BS01 rna N/A GO:0000027 ... G1SKF7 N/A
    904658 8vvq:EA (2.7) BS01 rna N/A GO:0003735 ... G1SF08 N/A
    904659 8vvq:EB (2.7) BS01 rna N/A GO:0003723 ... G1TK17 N/A
    904660 8vvq:EC (2.7) BS01 rna N/A GO:0003735 ... G1T8A2 N/A
    904661 8vvq:F (2.7) BS01 rna N/A GO:0000463 ... G1SV32 N/A
    904662 8vvq:F (2.7) BS02 rna N/A GO:0000463 ... G1SV32 N/A
    904663 8vvq:FA (2.7) BS01 rna N/A GO:0003735 ... G1TXG5 N/A
    904664 8vvq:FA (2.7) BS02 ZN N/A GO:0003735 ... G1TXG5 N/A
    904665 8vvq:FA (2.7) BS03 MG N/A GO:0003735 ... G1TXG5 N/A
    904666 8vvq:FB (2.7) BS01 rna N/A GO:0003723 ... G1TFM5 N/A
    904667 8vvq:FB (2.7) BS02 rna N/A GO:0003723 ... G1TFM5 N/A
    904668 8vvq:FC (2.7) BS01 rna N/A GO:0003735 ... G1SK22 N/A
    904669 8vvq:FC (2.7) BS02 ZN N/A GO:0003735 ... G1SK22 N/A
    904670 8vvq:G (2.7) BS01 rna N/A GO:0003723 ... G1STW0 N/A
    904671 8vvq:G (2.7) BS02 rna N/A GO:0003723 ... G1STW0 N/A
    904672 8vvq:GA (2.7) BS01 rna N/A GO:0000463 ... G1SIT5 N/A
    904673 8vvq:GA (2.7) BS02 rna N/A GO:0000463 ... G1SIT5 N/A
    904674 8vvq:GB (2.7) BS01 rna N/A GO:0003735 ... G1TM55 N/A
    904675 8vvq:GC (2.7) BS01 rna N/A GO:0001891 ... G1SJB4 N/A
    904676 8vvq:H (2.7) BS01 rna N/A GO:0002181 ... G1SWI6 N/A
    904677 8vvq:HA (2.7) BS01 rna N/A GO:0003735 ... G1TTQ5 N/A
    904678 8vvq:HB (2.7) BS01 rna N/A GO:0003735 ... G1SVB0 N/A
    904679 8vvq:HC (2.7) BS01 rna N/A GO:0003746 ... P68105 N/A
    904680 8vvq:HC (2.7) BS02 rna N/A GO:0003746 ... P68105 N/A
    904681 8vvq:HC (2.7) BS03 peptide N/A GO:0003746 ... P68105 N/A
    904682 8vvq:HC (2.7) BS04 GTP N/A GO:0003746 ... P68105 N/A
    904683 8vvq:HC (2.7) BS05 MG N/A GO:0003746 ... P68105 N/A
    904684 8vvq:HC (2.7) BS06 SER N/A GO:0003746 ... P68105 N/A
    904685 8vvq:I (2.7) BS01 rna N/A GO:0003735 ... B7NZQ2 N/A
    904686 8vvq:I (2.7) BS02 rna N/A GO:0003735 ... B7NZQ2 N/A
    904687 8vvq:IA (2.7) BS01 rna N/A GO:0002181 ... U3KPD5 N/A
    904688 8vvq:IA (2.7) BS02 rna N/A GO:0002181 ... U3KPD5 N/A
    904689 8vvq:IA (2.7) BS03 ZN N/A GO:0002181 ... U3KPD5 N/A
    904690 8vvq:IB (2.7) BS01 rna N/A GO:0003735 ... G1TJW1 N/A
    904691 8vvq:IB (2.7) BS02 rna N/A GO:0003735 ... G1TJW1 N/A
    904692 8vvq:J (2.7) BS01 rna N/A GO:0003735 ... G1TUB8 N/A
    904693 8vvq:J (2.7) BS02 rna N/A GO:0003735 ... G1TUB8 N/A
    904694 8vvq:J (2.7) BS03 rna N/A GO:0003735 ... G1TUB8 N/A
    904695 8vvq:JA (2.7) BS01 rna N/A GO:0003735 ... G1U001 N/A
    904696 8vvq:JB (2.7) BS01 rna N/A GO:0003723 ... B7NZS8 N/A
    904697 8vvq:K (2.7) BS01 rna N/A GO:0003735 ... N/A N/A
    904698 8vvq:K (2.7) BS02 rna N/A GO:0003735 ... N/A N/A
    904699 8vvq:KA (2.7) BS01 rna N/A GO:0003735 ... G1TTN1 N/A
    904700 8vvq:KA (2.7) BS02 rna N/A GO:0003735 ... G1TTN1 N/A
    904701 8vvq:KB (2.7) BS01 rna N/A GO:0003723 ... G1TPV3 N/A
    904702 8vvq:L (2.7) BS01 rna N/A GO:0003723 ... G1SZ12 N/A
    904703 8vvq:LA (2.7) BS01 rna N/A GO:0003735 ... N/A N/A
    904704 8vvq:LA (2.7) BS02 ZN N/A GO:0003735 ... N/A N/A
    904705 8vvq:LB (2.7) BS01 rna N/A GO:0003735 ... G1TRM4 N/A
    904706 8vvq:LB (2.7) BS02 MG N/A GO:0003735 ... G1TRM4 N/A
    904707 8vvq:M (2.7) BS01 rna N/A GO:0002181 ... G1T0C1 N/A
    904708 8vvq:M (2.7) BS02 rna N/A GO:0002181 ... G1T0C1 N/A
    904709 8vvq:MB (2.7) BS01 rna N/A GO:0003735 ... G1SFR8 N/A
    904710 8vvq:N (2.7) BS01 rna N/A GO:0003735 ... N/A N/A
    904711 8vvq:NA (2.7) BS01 rna N/A GO:0003735 ... G1T040 N/A
    904712 8vvq:NA (2.7) BS02 rna N/A GO:0003735 ... G1T040 N/A
    904713 8vvq:NA (2.7) BS03 rna N/A GO:0003735 ... G1T040 N/A
    904714 8vvq:NA (2.7) BS04 ZN N/A GO:0003735 ... G1T040 N/A
    904715 8vvq:NB (2.7) BS01 rna N/A GO:0003735 ... G1SP51 N/A
    904716 8vvq:O (2.7) BS01 rna N/A GO:0002181 ... G1SCJ6 N/A
    904717 8vvq:O (2.7) BS02 rna N/A GO:0002181 ... G1SCJ6 N/A
    904718 8vvq:OA (2.7) BS01 rna N/A GO:0003735 ... G1SY53 N/A
    904719 8vvq:OA (2.7) BS02 ZN N/A GO:0003735 ... G1SY53 N/A
    904720 8vvq:OB (2.7) BS01 rna N/A GO:0003735 ... G1T1F0 N/A
    904721 8vvq:P (2.7) BS01 rna N/A GO:0003723 ... G1TFE0 N/A
    904722 8vvq:PA (2.7) BS01 rna N/A GO:0003735 ... G1U7L1 N/A
    904723 8vvq:PB (2.7) BS01 rna N/A GO:0000028 ... G1U0Q2 N/A
    904724 8vvq:PB (2.7) BS02 rna N/A GO:0000028 ... G1U0Q2 N/A
    904725 8vvq:Q (2.7) BS01 rna N/A GO:0003723 ... N/A N/A
    904726 8vvq:Q (2.7) BS02 rna N/A GO:0003723 ... N/A N/A
    904727 8vvq:QB (2.7) BS01 rna N/A GO:0000462 ... G1SGX4 N/A
    904728 8vvq:R (2.7) BS01 rna N/A GO:0003735 ... N/A N/A
    904729 8vvq:R (2.7) BS02 rna N/A GO:0003735 ... N/A N/A
    904730 8vvq:RA (2.7) BS01 rna N/A GO:0003735 ... G1SMR7 N/A
    904731 8vvq:RB (2.7) BS01 rna N/A GO:0003735 ... G1TU13 N/A
    904732 8vvq:S (2.7) BS01 rna N/A GO:0003735 ... G1SHQ2 N/A
    904733 8vvq:S (2.7) BS02 rna N/A GO:0003735 ... G1SHQ2 N/A
    904734 8vvq:SB (2.7) BS01 rna N/A GO:0003676 ... G1TPG3 N/A
    904735 8vvq:T (2.7) BS01 rna N/A GO:0002181 ... G1TSG1 N/A
    904736 8vvq:TB (2.7) BS01 rna N/A GO:0000028 ... G1TN62 N/A
    904737 8vvq:U (2.7) BS01 rna N/A GO:0000122 ... G1T6D1 N/A
    904738 8vvq:UB (2.7) BS01 rna N/A GO:0003723 ... G1SIZ2 N/A
    904739 8vvq:V (2.7) BS01 rna N/A GO:0002181 ... G1SE28 N/A
    904740 8vvq:W (2.7) BS01 rna N/A GO:0003735 ... G1SE76 N/A
    904741 8vvq:W (2.7) BS02 rna N/A GO:0003735 ... G1SE76 N/A
    904742 8vvq:WB (2.7) BS01 rna N/A GO:0003735 ... G1TG89 N/A
    904743 8vvq:X (2.7) BS01 rna N/A GO:0003723 ... G1SQH0 N/A
    904744 8vvq:X (2.7) BS02 rna N/A GO:0003723 ... G1SQH0 N/A
    904745 8vvq:XB (2.7) BS01 rna N/A GO:0003735 ... G1SZ47 N/A
    904746 8vvq:Y (2.7) BS01 rna N/A GO:0002181 ... G1TXF6 N/A
    904747 8vvq:YB (2.7) BS01 rna N/A GO:0003735 ... G1T3D8 N/A
    904748 8vvq:Z (2.7) BS01 rna N/A GO:0003735 ... G1SNY0 N/A
    904749 8vvq:ZB (2.7) BS01 rna N/A GO:0003735 ... G1TDB3 N/A
    904750 8vvq:b (2.7) BS01 rna N/A GO:0000027 ... G1SPK4 N/A
    904751 8vvr:A (3.1) BS01 rna N/A GO:0002181 ... G1TT27 N/A
    904752 8vvr:A (3.1) BS02 rna N/A GO:0002181 ... G1TT27 N/A
    904753 8vvr:A (3.1) BS03 MG N/A GO:0002181 ... G1TT27 N/A
    904754 8vvr:AA (3.1) BS01 rna N/A GO:0002181 ... G1SGR6 N/A
    904755 8vvr:AB (3.1) BS01 rna N/A GO:0000028 ... G1TLT8 N/A
    904756 8vvr:AC (3.1) BS01 rna N/A GO:0003729 ... G1TFE8 N/A
    904757 8vvr:AC (3.1) BS02 ZN N/A GO:0003729 ... G1TFE8 N/A
    904758 8vvr:B (3.1) BS01 rna N/A GO:0003723 ... G1TL06 N/A
    904759 8vvr:BA (3.1) BS01 rna N/A GO:0003723 ... G1TDL2 N/A
    904760 8vvr:BB (3.1) BS01 rna N/A GO:0003735 ... G1SS70 N/A
    904761 8vvr:BC (3.1) BS01 rna N/A GO:0003735 ... G1TZ76 N/A
    904762 8vvr:C (3.1) BS01 rna N/A GO:0003735 ... G1SVW5 N/A
    904763 8vvr:C (3.1) BS02 rna N/A GO:0003735 ... G1SVW5 N/A
    904764 8vvr:CA (3.1) BS01 rna N/A GO:0002181 ... G1SHG0 N/A
    904765 8vvr:CB (3.1) BS01 rna N/A GO:0003723 ... N/A N/A
    904766 8vvr:CC (3.1) BS01 rna N/A GO:0000028 ... G1TIB4 N/A
    904767 8vvr:D (3.1) BS01 rna N/A GO:0000027 ... P19949 N/A
    904768 8vvr:D (3.1) BS02 rna N/A GO:0000027 ... P19949 N/A
    904769 8vvr:DA (3.1) BS01 rna N/A GO:0003735 ... G1TUN8 N/A
    904770 8vvr:DB (3.1) BS01 rna N/A GO:0003723 ... G1TNM3 N/A
    904771 8vvr:DC (3.1) BS01 rna N/A GO:0002181 ... G1U7M4 N/A
    904772 8vvr:DC (3.1) BS02 ZN N/A GO:0002181 ... G1U7M4 N/A
    904773 8vvr:E (3.1) BS01 rna N/A GO:0000027 ... G1SKF7 N/A
    904774 8vvr:EA (3.1) BS01 rna N/A GO:0003735 ... G1SF08 N/A
    904775 8vvr:EB (3.1) BS01 rna N/A GO:0003723 ... G1TK17 N/A
    904776 8vvr:EC (3.1) BS01 rna N/A GO:0003735 ... G1T8A2 N/A
    904777 8vvr:F (3.1) BS01 rna N/A GO:0000463 ... G1SV32 N/A
    904778 8vvr:F (3.1) BS02 rna N/A GO:0000463 ... G1SV32 N/A
    904779 8vvr:FA (3.1) BS01 rna N/A GO:0003735 ... G1TXG5 N/A
    904780 8vvr:FA (3.1) BS02 ZN N/A GO:0003735 ... G1TXG5 N/A
    904781 8vvr:FB (3.1) BS01 rna N/A GO:0003723 ... G1TFM5 N/A
    904782 8vvr:FB (3.1) BS02 rna N/A GO:0003723 ... G1TFM5 N/A
    904783 8vvr:FC (3.1) BS01 rna N/A GO:0003735 ... G1SK22 N/A
    904784 8vvr:FC (3.1) BS02 ZN N/A GO:0003735 ... G1SK22 N/A
    904785 8vvr:G (3.1) BS01 rna N/A GO:0003723 ... G1STW0 N/A
    904786 8vvr:G (3.1) BS02 rna N/A GO:0003723 ... G1STW0 N/A
    904787 8vvr:GA (3.1) BS01 rna N/A GO:0000463 ... G1SIT5 N/A
    904788 8vvr:GA (3.1) BS02 rna N/A GO:0000463 ... G1SIT5 N/A
    904789 8vvr:GB (3.1) BS01 rna N/A GO:0003735 ... G1TM55 N/A
    904790 8vvr:GC (3.1) BS01 rna N/A GO:0001891 ... G1SJB4 N/A
    904791 8vvr:H (3.1) BS01 rna N/A GO:0002181 ... G1SWI6 N/A
    904792 8vvr:HA (3.1) BS01 rna N/A GO:0003735 ... G1TTQ5 N/A
    904793 8vvr:HB (3.1) BS01 rna N/A GO:0003735 ... G1SVB0 N/A
    904794 8vvr:HC (3.1) BS01 rna N/A GO:0003746 ... P68105 N/A
    904795 8vvr:HC (3.1) BS02 rna N/A GO:0003746 ... P68105 N/A
    904796 8vvr:HC (3.1) BS03 peptide N/A GO:0003746 ... P68105 N/A
    904797 8vvr:HC (3.1) BS04 SER N/A GO:0003746 ... P68105 N/A
    904798 8vvr:I (3.1) BS01 rna N/A GO:0003735 ... B7NZQ2 N/A
    904799 8vvr:I (3.1) BS02 rna N/A GO:0003735 ... B7NZQ2 N/A
    904800 8vvr:IA (3.1) BS01 rna N/A GO:0002181 ... U3KPD5 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).