SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    904601 8wvz:A (3.15) BS03 MG N/A GO:0004386 ... A0A2X0TKI6 N/A
    904602 8wvz:B (3.15) BS01 dna N/A GO:0004386 ... A0A2X0TKI6 N/A
    904603 8wvz:B (3.15) BS02 ADP N/A GO:0004386 ... A0A2X0TKI6 N/A
    904604 8wvz:C (3.15) BS01 dna N/A GO:0004386 ... A0A2X0TKI6 N/A
    904605 8wvz:C (3.15) BS02 ADP N/A GO:0004386 ... A0A2X0TKI6 N/A
    904606 8wvz:D (3.15) BS01 dna N/A GO:0004386 ... A0A2X0TKI6 N/A
    904607 8wvz:D (3.15) BS02 ADP N/A GO:0004386 ... A0A2X0TKI6 N/A
    904608 8wvz:E (3.15) BS01 ADP N/A GO:0004386 ... A0A2X0TKI6 N/A
    904609 8wvz:F (3.15) BS01 dna N/A GO:0004386 ... A0A2X0TKI6 N/A
    904610 8wvz:F (3.15) BS02 ADP N/A GO:0004386 ... A0A2X0TKI6 N/A
    904611 8ww2:R (2.79) BS01 OLA ? GO:0003376 ... P46089 38287117
    904612 8ww2:R (2.79) BS02 Y01 ? GO:0003376 ... P46089 38287117
    904613 8wwb:A (2.503) BS01 ZWY N/A GO:0005634 ... Q6DCU6 38965213
    904614 8wwc:A (2.8) BS01 GNP N/A N/A P01112 N/A
    904615 8wwc:A (2.8) BS02 MG N/A N/A P01112 N/A
    904616 8wwc:B (2.8) BS01 GNP N/A N/A P01112 N/A
    904617 8wwc:B (2.8) BS02 MG N/A N/A P01112 N/A
    904618 8wwd:A (2.3) BS01 ZN N/A GO:0016491 ... A8LPS1 38709871
    904619 8wwd:A (2.3) BS02 ZN N/A GO:0016491 ... A8LPS1 38709871
    904620 8wwd:A (2.3) BS03 ZN N/A GO:0016491 ... A8LPS1 38709871
    904621 8wwd:A (2.3) BS04 ZN N/A GO:0016491 ... A8LPS1 38709871
    904622 8wwd:B (2.3) BS01 ZN N/A GO:0016491 ... A8LPS1 38709871
    904623 8wwd:B (2.3) BS02 ZN N/A GO:0016491 ... A8LPS1 38709871
    904624 8wwd:B (2.3) BS03 ZN N/A GO:0016491 ... A8LPS1 38709871
    904625 8wwd:C (2.3) BS01 ZN N/A GO:0016491 ... A8LPS1 38709871
    904626 8wwd:C (2.3) BS02 ZN N/A GO:0016491 ... A8LPS1 38709871
    904627 8wwd:D (2.3) BS01 ZN N/A GO:0016491 ... A8LPS1 38709871
    904628 8wwd:D (2.3) BS02 ZN N/A GO:0016491 ... A8LPS1 38709871
    904629 8wwg:A (1.921) BS01 NAD N/A N/A Q5ZTY7 38735607
    904630 8wwk:R (2.61) BS01 peptide N/A GO:0004930 ... Q99705 39616153
    904631 8wwl:R (2.78) BS01 peptide N/A GO:0004930 ... Q99705 39616153
    904632 8wwm:R (2.81) BS01 peptide N/A GO:0004930 ... Q99705 39616153
    904633 8wwn:R (2.65) BS01 peptide N/A GO:0004930 ... Q99705 39616153
    904634 8wwo:A (2.2) BS01 ANP 5.6.2.2 N/A A0A2X0THW2 38411066
    904635 8wwo:B (2.2) BS01 ANP 5.6.2.2 N/A A0A2X0THW2 38411066
    904636 8wwo:C (2.2) BS01 ANP 5.6.2.2 N/A A0A2X0THW2 38411066
    904637 8wwo:D (2.2) BS01 ANP 5.6.2.2 N/A A0A2X0THW2 38411066
    904638 8wwq:A (1.958) BS01 XQ8 N/A N/A N/A N/A
    904639 8wwq:A (1.958) BS02 SAH N/A N/A N/A N/A
    904640 8wwq:A (1.958) BS03 MG N/A N/A N/A N/A
    904641 8wwq:B (1.958) BS01 SAH N/A N/A N/A N/A
    904642 8wwq:B (1.958) BS02 MG N/A N/A N/A N/A
    904643 8wwu:A (2.0) BS01 ANP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904644 8wwu:A (2.0) BS02 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904645 8wwu:A (2.0) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904646 8wwu:A (2.0) BS04 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904647 8wwu:B (2.0) BS01 ANP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904648 8wwu:B (2.0) BS02 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904649 8wwu:B (2.0) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904650 8wwu:B (2.0) BS04 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904651 8wwu:C (2.0) BS01 ANP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904652 8wwu:C (2.0) BS02 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904653 8wwu:C (2.0) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904654 8wwu:C (2.0) BS04 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904655 8wwu:D (2.0) BS01 ANP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904656 8wwu:D (2.0) BS02 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904657 8wwu:D (2.0) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904658 8wwu:D (2.0) BS04 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904659 8wwu:E (2.0) BS01 ANP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904660 8wwu:E (2.0) BS02 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904661 8wwu:E (2.0) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904662 8wwu:E (2.0) BS04 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904663 8wwu:F (2.0) BS01 ANP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904664 8wwu:F (2.0) BS02 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904665 8wwu:F (2.0) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904666 8wwu:F (2.0) BS04 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904667 8wwv:A (2.3) BS01 ADP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904668 8wwv:A (2.3) BS02 P3S 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904669 8wwv:A (2.3) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904670 8wwv:A (2.3) BS04 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904671 8wwv:A (2.3) BS05 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904672 8wwv:B (2.3) BS01 ADP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904673 8wwv:B (2.3) BS02 P3S 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904674 8wwv:B (2.3) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904675 8wwv:B (2.3) BS04 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904676 8wwv:B (2.3) BS05 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904677 8wwv:C (2.3) BS01 ADP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904678 8wwv:C (2.3) BS02 P3S 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904679 8wwv:C (2.3) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904680 8wwv:C (2.3) BS04 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904681 8wwv:C (2.3) BS05 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904682 8wwv:D (2.3) BS01 ADP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904683 8wwv:D (2.3) BS02 P3S 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904684 8wwv:D (2.3) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904685 8wwv:D (2.3) BS04 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904686 8wwv:D (2.3) BS05 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904687 8wwv:E (2.3) BS01 ADP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904688 8wwv:E (2.3) BS02 P3S 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904689 8wwv:E (2.3) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904690 8wwv:E (2.3) BS04 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904691 8wwv:E (2.3) BS05 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904692 8wwv:F (2.3) BS01 ADP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904693 8wwv:F (2.3) BS02 P3S 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904694 8wwv:F (2.3) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904695 8wwv:F (2.3) BS04 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904696 8wwv:F (2.3) BS05 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 39163210
    904697 8www:A (2.78) BS01 YG3 N/A N/A A0A124HF73 N/A
    904698 8www:B (2.78) BS01 YG3 N/A N/A A0A124HF73 N/A
    904699 8wwy:C (1.79) BS01 HX2 ? GO:0043123 ... Q793I8 38442163
    904700 8wwy:D (1.79) BS01 HX2 ? GO:0002224 ... Q8JZM6 38442163
    904701 8wwy:D (1.79) BS02 HX2 ? GO:0002224 ... Q8JZM6 38442163
    904702 8wx0:A (3.7) BS01 rna N/A GO:0000175 ... P9WI57 38395123
    904703 8wx0:A (3.7) BS02 rna N/A GO:0000175 ... P9WI57 38395123
    904704 8wx0:B (3.7) BS01 rna N/A GO:0000175 ... P9WI57 38395123
    904705 8wx0:B (3.7) BS02 rna N/A GO:0000175 ... P9WI57 38395123
    904706 8wx0:C (3.7) BS01 rna N/A GO:0000175 ... P9WI57 38395123
    904707 8wx0:C (3.7) BS02 rna N/A GO:0000175 ... P9WI57 38395123
    904708 8wx4:A (3.12) BS01 LYS ? GO:0005290 ... Q8N697 N/A
    904709 8wx4:A (3.12) BS02 LEU ? GO:0005290 ... Q8N697 N/A
    904710 8wx4:B (3.12) BS01 LYS ? GO:0005290 ... Q8N697 N/A
    904711 8wx4:B (3.12) BS02 LEU ? GO:0005290 ... Q8N697 N/A
    904712 8wx5:A (3.91) BS01 peptide ? GO:0005290 ... Q8N697 N/A
    904713 8wx7:A (2.02) BS01 XD8 N/A GO:0004725 ... Q06124 39110625
    904714 8wx7:B (2.02) BS01 XD8 N/A GO:0004725 ... Q06124 39110625
    904715 8wxe:m (4.0) BS01 peptide ? N/A Q6PJ56 38657677
    904716 8wxe:m (4.0) BS02 CLR ? N/A Q6PJ56 38657677
    904717 8wxe:n (4.0) BS01 peptide ? GO:0002250 ... P0CF51 38657677
    904718 8wxk:A (2.26) BS01 NAD N/A GO:0003978 ... Q8YN57 N/A
    904719 8wxk:A (2.26) BS02 UPG N/A GO:0003978 ... Q8YN57 N/A
    904720 8wxk:B (2.26) BS01 NAD N/A GO:0003978 ... Q8YN57 N/A
    904721 8wxk:B (2.26) BS02 UPG N/A GO:0003978 ... Q8YN57 N/A
    904722 8wxk:C (2.26) BS01 NAD N/A GO:0003978 ... Q8YN57 N/A
    904723 8wxk:C (2.26) BS02 UPG N/A GO:0003978 ... Q8YN57 N/A
    904724 8wxk:D (2.26) BS01 NAD N/A GO:0003978 ... Q8YN57 N/A
    904725 8wxk:D (2.26) BS02 UPG N/A GO:0003978 ... Q8YN57 N/A
    904726 8wxq:A (1.9) BS01 peptide N/A GO:0000122 ... P61964 38876301
    904727 8wxq:B (1.9) BS01 peptide N/A GO:0000122 ... P61964 38876301
    904728 8wxr:A (2.08) BS01 peptide N/A GO:0000122 ... P61964 38876301
    904729 8wxr:B (2.08) BS01 peptide N/A GO:0000122 ... P61964 38876301
    904730 8wxt:A (1.83) BS01 peptide N/A GO:0000122 ... P61964 38876301
    904731 8wxu:B (2.37) BS01 peptide N/A GO:0000122 ... P61964 38876301
    904732 8wxv:A (2.4) BS01 peptide N/A GO:0000122 ... P61964 38876301
    904733 8wxv:C (2.4) BS01 peptide N/A GO:0000122 ... P61964 38876301
    904734 8wxw:A (1.86) BS01 peptide N/A N/A N/A 39217277
    904735 8wxw:A (1.86) BS02 ZN N/A N/A N/A 39217277
    904736 8wxx:A (2.1) BS01 peptide N/A GO:0000122 ... P61964 38876301
    904737 8wxx:B (2.1) BS01 peptide N/A GO:0000122 ... P61964 38876301
    904738 8wxy:A (2.87) BS01 XGN ? N/A O60885 38175809
    904739 8wxy:B (2.87) BS01 XGN ? N/A O60885 38175809
    904740 8wxy:C (2.87) BS01 XGN ? N/A O60885 38175809
    904741 8wxz:A (2.3) BS01 peptide N/A N/A N/A 39217277
    904742 8wxz:A (2.3) BS02 ZN N/A N/A N/A 39217277
    904743 8wy0:b (3.8) BS01 peptide ? GO:0004888 ... P20963 38657677
    904744 8wy0:b (3.8) BS02 CLR ? GO:0004888 ... P20963 38657677
    904745 8wy0:e (3.8) BS01 peptide ? GO:0004888 ... P07766 38657677
    904746 8wy0:g (3.8) BS01 CLR ? GO:0004888 ... P09693 38657677
    904747 8wy0:m (3.8) BS01 peptide ? GO:0002250 ... A0JD36
    B7Z8K6
    38657677
    904748 8wy0:n (3.8) BS01 peptide ? GO:0002250 ... P0CF51
    Q99603
    38657677
    904749 8wy3:A (2.78) BS01 XHE ? N/A O60885 38175809
    904750 8wy3:B (2.78) BS01 XHE ? N/A O60885 38175809
    904751 8wy3:C (2.78) BS01 XHE ? N/A O60885 38175809
    904752 8wy4:A (2.81) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    904753 8wy4:A (2.81) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    904754 8wy4:B (2.81) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    904755 8wy4:B (2.81) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    904756 8wy4:C (2.81) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    904757 8wy4:C (2.81) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    904758 8wy4:D (2.81) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    904759 8wy4:D (2.81) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    904760 8wy5:A (3.12) BS01 dna 3.1.-.- GO:0004519 ... J8H9C1 38471529
    904761 8wy5:A (3.12) BS02 dna 3.1.-.- GO:0004519 ... J8H9C1 38471529
    904762 8wy5:B (3.12) BS01 dna 3.1.-.- GO:0004519 ... J8H9C1 38471529
    904763 8wy5:B (3.12) BS02 dna 3.1.-.- GO:0004519 ... J8H9C1 38471529
    904764 8wy5:C (3.12) BS01 dna 3.1.-.- GO:0004519 ... J8H9C1 38471529
    904765 8wy5:C (3.12) BS02 dna 3.1.-.- GO:0004519 ... J8H9C1 38471529
    904766 8wy5:C (3.12) BS03 CA 3.1.-.- GO:0004519 ... J8H9C1 38471529
    904767 8wy5:D (3.12) BS01 dna 3.1.-.- GO:0004519 ... J8H9C1 38471529
    904768 8wy5:D (3.12) BS02 dna 3.1.-.- GO:0004519 ... J8H9C1 38471529
    904769 8wy5:D (3.12) BS03 CA 3.1.-.- GO:0004519 ... J8H9C1 38471529
    904770 8wy7:A (2.83) BS01 XHN ? N/A O60885 38175809
    904771 8wy7:B (2.83) BS01 XHN ? N/A O60885 38175809
    904772 8wy7:C (2.83) BS01 XHN ? N/A O60885 38175809
    904773 8wyb:A (3.37) BS01 NAD ? N/A D4G637 38555355
    904774 8wyb:B (3.37) BS01 NAD ? N/A D4G637 38555355
    904775 8wyb:C (3.37) BS01 NAD ? N/A D4G637 38555355
    904776 8wyb:D (3.37) BS01 NAD ? N/A D4G637 38555355
    904777 8wyc:A (3.0) BS01 NAD ? N/A D4G637 38555355
    904778 8wyc:B (3.0) BS01 NAD ? N/A D4G637 38555355
    904779 8wyc:C (3.0) BS01 NAD ? N/A D4G637 38555355
    904780 8wyc:D (3.0) BS01 NAD ? N/A D4G637 38555355
    904781 8wyf:A (2.85) BS01 NAD N/A N/A D4G637 38555355
    904782 8wyf:B (2.85) BS01 NAD N/A N/A D4G637 38555355
    904783 8wyf:C (2.85) BS01 NAD N/A N/A D4G637 38555355
    904784 8wyf:D (2.85) BS01 NAD N/A N/A D4G637 38555355
    904785 8wyg:A (3.13) BS01 XHN ? N/A P25440 38175809
    904786 8wyg:A (3.13) BS02 XHN ? N/A P25440 38175809
    904787 8wyg:B (3.13) BS01 XHN ? N/A P25440 38175809
    904788 8wyg:C (3.13) BS01 XHN ? N/A P25440 38175809
    904789 8wyg:C (3.13) BS02 XHN ? N/A P25440 38175809
    904790 8wyg:D (3.13) BS01 XHN ? N/A P25440 38175809
    904791 8wyi:a (3.9) BS01 peptide ? GO:0004888 ... P20963 38657677
    904792 8wyi:m (3.9) BS01 peptide ? N/A A0JD36
    B7Z8K6
    P01848
    38657677
    904793 8wyi:n (3.9) BS01 peptide ? GO:0002250 ... P0CF51
    Q99603
    38657677
    904794 8wyp:A (1.24) BS01 XUK ? N/A O60885 38006801
    904795 8wyp:A (1.24) BS02 XUK ? N/A O60885 38006801
    904796 8wyr:M (3.39) BS01 CA N/A GO:0002376 ... O43866
    P60568
    39333069
    904797 8wyr:M (3.39) BS02 CA N/A GO:0002376 ... O43866
    P60568
    39333069
    904798 8wys:M (3.41) BS01 CA N/A GO:0002376 ... O43866
    P60568
    39333069
    904799 8wys:M (3.41) BS02 CA N/A GO:0002376 ... O43866
    P60568
    39333069
    904800 8wyt:A (2.7) BS01 H8F N/A N/A N/A 39217277

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).