SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    904801 8vvr:IA (3.1) BS02 rna N/A GO:0002181 ... U3KPD5 N/A
    904802 8vvr:IA (3.1) BS03 ZN N/A GO:0002181 ... U3KPD5 N/A
    904803 8vvr:IB (3.1) BS01 rna N/A GO:0003735 ... G1TJW1 N/A
    904804 8vvr:J (3.1) BS01 rna N/A GO:0003735 ... G1TUB8 N/A
    904805 8vvr:J (3.1) BS02 rna N/A GO:0003735 ... G1TUB8 N/A
    904806 8vvr:J (3.1) BS03 rna N/A GO:0003735 ... G1TUB8 N/A
    904807 8vvr:JA (3.1) BS01 rna N/A GO:0003735 ... G1U001 N/A
    904808 8vvr:JB (3.1) BS01 rna N/A GO:0003723 ... B7NZS8 N/A
    904809 8vvr:K (3.1) BS01 rna N/A GO:0003735 ... N/A N/A
    904810 8vvr:K (3.1) BS02 rna N/A GO:0003735 ... N/A N/A
    904811 8vvr:KA (3.1) BS01 rna N/A GO:0003735 ... G1TTN1 N/A
    904812 8vvr:KA (3.1) BS02 rna N/A GO:0003735 ... G1TTN1 N/A
    904813 8vvr:KB (3.1) BS01 rna N/A GO:0003723 ... G1TPV3 N/A
    904814 8vvr:L (3.1) BS01 rna N/A GO:0003723 ... G1SZ12 N/A
    904815 8vvr:LA (3.1) BS01 rna N/A GO:0003735 ... N/A N/A
    904816 8vvr:LA (3.1) BS02 ZN N/A GO:0003735 ... N/A N/A
    904817 8vvr:LB (3.1) BS01 rna N/A GO:0003735 ... G1TRM4 N/A
    904818 8vvr:M (3.1) BS01 rna N/A GO:0002181 ... G1T0C1 N/A
    904819 8vvr:M (3.1) BS02 rna N/A GO:0002181 ... G1T0C1 N/A
    904820 8vvr:MB (3.1) BS01 rna N/A GO:0003735 ... G1SFR8 N/A
    904821 8vvr:N (3.1) BS01 rna N/A GO:0003735 ... N/A N/A
    904822 8vvr:NA (3.1) BS01 rna N/A GO:0003735 ... G1T040 N/A
    904823 8vvr:NA (3.1) BS02 rna N/A GO:0003735 ... G1T040 N/A
    904824 8vvr:NA (3.1) BS03 rna N/A GO:0003735 ... G1T040 N/A
    904825 8vvr:NA (3.1) BS04 ZN N/A GO:0003735 ... G1T040 N/A
    904826 8vvr:NB (3.1) BS01 rna N/A GO:0003735 ... G1SP51 N/A
    904827 8vvr:NB (3.1) BS02 rna N/A GO:0003735 ... G1SP51 N/A
    904828 8vvr:O (3.1) BS01 rna N/A GO:0002181 ... G1SCJ6 N/A
    904829 8vvr:O (3.1) BS02 rna N/A GO:0002181 ... G1SCJ6 N/A
    904830 8vvr:OA (3.1) BS01 rna N/A GO:0003735 ... G1SY53 N/A
    904831 8vvr:OA (3.1) BS02 ZN N/A GO:0003735 ... G1SY53 N/A
    904832 8vvr:OB (3.1) BS01 rna N/A GO:0003735 ... G1T1F0 N/A
    904833 8vvr:P (3.1) BS01 rna N/A GO:0003723 ... G1TFE0 N/A
    904834 8vvr:PA (3.1) BS01 rna N/A GO:0003735 ... G1U7L1 N/A
    904835 8vvr:PB (3.1) BS01 rna N/A GO:0000028 ... G1U0Q2 N/A
    904836 8vvr:PB (3.1) BS02 rna N/A GO:0000028 ... G1U0Q2 N/A
    904837 8vvr:Q (3.1) BS01 rna N/A GO:0003723 ... N/A N/A
    904838 8vvr:Q (3.1) BS02 rna N/A GO:0003723 ... N/A N/A
    904839 8vvr:QB (3.1) BS01 rna N/A GO:0000462 ... G1SGX4 N/A
    904840 8vvr:R (3.1) BS01 rna N/A GO:0003735 ... N/A N/A
    904841 8vvr:R (3.1) BS02 rna N/A GO:0003735 ... N/A N/A
    904842 8vvr:RA (3.1) BS01 rna N/A GO:0003735 ... G1SMR7 N/A
    904843 8vvr:RB (3.1) BS01 rna N/A GO:0003735 ... G1TU13 N/A
    904844 8vvr:S (3.1) BS01 rna N/A GO:0003735 ... G1SHQ2 N/A
    904845 8vvr:S (3.1) BS02 rna N/A GO:0003735 ... G1SHQ2 N/A
    904846 8vvr:SB (3.1) BS01 rna N/A GO:0003676 ... G1TPG3 N/A
    904847 8vvr:T (3.1) BS01 rna N/A GO:0002181 ... G1TSG1 N/A
    904848 8vvr:TB (3.1) BS01 rna N/A GO:0000028 ... G1TN62 N/A
    904849 8vvr:U (3.1) BS01 rna N/A GO:0000122 ... G1T6D1 N/A
    904850 8vvr:UB (3.1) BS01 rna N/A GO:0003723 ... G1SIZ2 N/A
    904851 8vvr:V (3.1) BS01 rna N/A GO:0002181 ... G1SE28 N/A
    904852 8vvr:V (3.1) BS02 rna N/A GO:0002181 ... G1SE28 N/A
    904853 8vvr:W (3.1) BS01 rna N/A GO:0003735 ... G1SE76 N/A
    904854 8vvr:W (3.1) BS02 rna N/A GO:0003735 ... G1SE76 N/A
    904855 8vvr:WB (3.1) BS01 rna N/A GO:0003735 ... G1TG89 N/A
    904856 8vvr:X (3.1) BS01 rna N/A GO:0003723 ... G1SQH0 N/A
    904857 8vvr:X (3.1) BS02 rna N/A GO:0003723 ... G1SQH0 N/A
    904858 8vvr:XB (3.1) BS01 rna N/A GO:0003735 ... G1SZ47 N/A
    904859 8vvr:Y (3.1) BS01 rna N/A GO:0002181 ... G1TXF6 N/A
    904860 8vvr:YB (3.1) BS01 rna N/A GO:0003735 ... G1T3D8 N/A
    904861 8vvr:Z (3.1) BS01 rna N/A GO:0003735 ... G1SNY0 N/A
    904862 8vvr:ZB (3.1) BS01 rna N/A GO:0003735 ... G1TDB3 N/A
    904863 8vvr:b (3.1) BS01 rna N/A GO:0000027 ... G1SPK4 N/A
    904864 8vvs:A (3.1) BS01 rna N/A GO:0002181 ... G1TT27 N/A
    904865 8vvs:A (3.1) BS02 rna N/A GO:0002181 ... G1TT27 N/A
    904866 8vvs:A (3.1) BS03 MG N/A GO:0002181 ... G1TT27 N/A
    904867 8vvs:AA (3.1) BS01 rna N/A GO:0002181 ... G1SGR6 N/A
    904868 8vvs:AB (3.1) BS01 rna N/A GO:0000028 ... G1TLT8 N/A
    904869 8vvs:AC (3.1) BS01 rna N/A GO:0003729 ... G1TFE8 N/A
    904870 8vvs:AC (3.1) BS02 ZN N/A GO:0003729 ... G1TFE8 N/A
    904871 8vvs:B (3.1) BS01 rna N/A GO:0003723 ... G1TL06 N/A
    904872 8vvs:BA (3.1) BS01 rna N/A GO:0003723 ... G1TDL2 N/A
    904873 8vvs:BB (3.1) BS01 rna N/A GO:0003735 ... G1SS70 N/A
    904874 8vvs:BC (3.1) BS01 rna N/A GO:0003735 ... G1TZ76 N/A
    904875 8vvs:C (3.1) BS01 rna N/A GO:0003735 ... G1SVW5 N/A
    904876 8vvs:C (3.1) BS02 rna N/A GO:0003735 ... G1SVW5 N/A
    904877 8vvs:CA (3.1) BS01 rna N/A GO:0002181 ... G1SHG0 N/A
    904878 8vvs:CB (3.1) BS01 rna N/A GO:0003723 ... N/A N/A
    904879 8vvs:CC (3.1) BS01 rna N/A GO:0000028 ... G1TIB4 N/A
    904880 8vvs:D (3.1) BS01 rna N/A GO:0000027 ... P19949 N/A
    904881 8vvs:D (3.1) BS02 rna N/A GO:0000027 ... P19949 N/A
    904882 8vvs:DA (3.1) BS01 rna N/A GO:0003735 ... G1TUN8 N/A
    904883 8vvs:DB (3.1) BS01 rna N/A GO:0003723 ... G1TNM3 N/A
    904884 8vvs:DC (3.1) BS01 rna N/A GO:0002181 ... G1U7M4 N/A
    904885 8vvs:DC (3.1) BS02 ZN N/A GO:0002181 ... G1U7M4 N/A
    904886 8vvs:E (3.1) BS01 rna N/A GO:0000027 ... G1SKF7 N/A
    904887 8vvs:EA (3.1) BS01 rna N/A GO:0003735 ... G1SF08 N/A
    904888 8vvs:EB (3.1) BS01 rna N/A GO:0003723 ... G1TK17 N/A
    904889 8vvs:EC (3.1) BS01 rna N/A GO:0003735 ... G1T8A2 N/A
    904890 8vvs:F (3.1) BS01 rna N/A GO:0000463 ... G1SV32 N/A
    904891 8vvs:F (3.1) BS02 rna N/A GO:0000463 ... G1SV32 N/A
    904892 8vvs:FA (3.1) BS01 rna N/A GO:0003735 ... G1TXG5 N/A
    904893 8vvs:FA (3.1) BS02 ZN N/A GO:0003735 ... G1TXG5 N/A
    904894 8vvs:FB (3.1) BS01 rna N/A GO:0003723 ... G1TFM5 N/A
    904895 8vvs:FB (3.1) BS02 rna N/A GO:0003723 ... G1TFM5 N/A
    904896 8vvs:FC (3.1) BS01 rna N/A GO:0003735 ... G1SK22 N/A
    904897 8vvs:FC (3.1) BS02 ZN N/A GO:0003735 ... G1SK22 N/A
    904898 8vvs:G (3.1) BS01 rna N/A GO:0003723 ... G1STW0 N/A
    904899 8vvs:G (3.1) BS02 rna N/A GO:0003723 ... G1STW0 N/A
    904900 8vvs:GA (3.1) BS01 rna N/A GO:0000463 ... G1SIT5 N/A
    904901 8vvs:GA (3.1) BS02 rna N/A GO:0000463 ... G1SIT5 N/A
    904902 8vvs:GB (3.1) BS01 rna N/A GO:0003735 ... G1TM55 N/A
    904903 8vvs:GC (3.1) BS01 rna N/A GO:0001891 ... G1SJB4 N/A
    904904 8vvs:H (3.1) BS01 rna N/A GO:0002181 ... G1SWI6 N/A
    904905 8vvs:HA (3.1) BS01 rna N/A GO:0003735 ... G1TTQ5 N/A
    904906 8vvs:HB (3.1) BS01 rna N/A GO:0003735 ... G1SVB0 N/A
    904907 8vvs:HC (3.1) BS01 rna N/A GO:0003746 ... P68105 N/A
    904908 8vvs:HC (3.1) BS02 rna N/A GO:0003746 ... P68105 N/A
    904909 8vvs:HC (3.1) BS03 peptide N/A GO:0003746 ... P68105 N/A
    904910 8vvs:HC (3.1) BS04 SER N/A GO:0003746 ... P68105 N/A
    904911 8vvs:I (3.1) BS01 rna N/A GO:0003735 ... B7NZQ2 N/A
    904912 8vvs:I (3.1) BS02 rna N/A GO:0003735 ... B7NZQ2 N/A
    904913 8vvs:IA (3.1) BS01 rna N/A GO:0002181 ... U3KPD5 N/A
    904914 8vvs:IA (3.1) BS02 rna N/A GO:0002181 ... U3KPD5 N/A
    904915 8vvs:IA (3.1) BS03 ZN N/A GO:0002181 ... U3KPD5 N/A
    904916 8vvs:IB (3.1) BS01 rna N/A GO:0003735 ... G1TJW1 N/A
    904917 8vvs:J (3.1) BS01 rna N/A GO:0003735 ... G1TUB8 N/A
    904918 8vvs:J (3.1) BS02 rna N/A GO:0003735 ... G1TUB8 N/A
    904919 8vvs:J (3.1) BS03 rna N/A GO:0003735 ... G1TUB8 N/A
    904920 8vvs:JA (3.1) BS01 rna N/A GO:0003735 ... G1U001 N/A
    904921 8vvs:JB (3.1) BS01 rna N/A GO:0003723 ... B7NZS8 N/A
    904922 8vvs:K (3.1) BS01 rna N/A GO:0003735 ... N/A N/A
    904923 8vvs:K (3.1) BS02 rna N/A GO:0003735 ... N/A N/A
    904924 8vvs:KA (3.1) BS01 rna N/A GO:0003735 ... G1TTN1 N/A
    904925 8vvs:KA (3.1) BS02 rna N/A GO:0003735 ... G1TTN1 N/A
    904926 8vvs:KB (3.1) BS01 rna N/A GO:0003723 ... G1TPV3 N/A
    904927 8vvs:L (3.1) BS01 rna N/A GO:0003723 ... G1SZ12 N/A
    904928 8vvs:LA (3.1) BS01 rna N/A GO:0003735 ... N/A N/A
    904929 8vvs:LA (3.1) BS02 ZN N/A GO:0003735 ... N/A N/A
    904930 8vvs:LB (3.1) BS01 rna N/A GO:0003735 ... G1TRM4 N/A
    904931 8vvs:M (3.1) BS01 rna N/A GO:0002181 ... G1T0C1 N/A
    904932 8vvs:M (3.1) BS02 rna N/A GO:0002181 ... G1T0C1 N/A
    904933 8vvs:MB (3.1) BS01 rna N/A GO:0003735 ... G1SFR8 N/A
    904934 8vvs:N (3.1) BS01 rna N/A GO:0003735 ... N/A N/A
    904935 8vvs:NA (3.1) BS01 rna N/A GO:0003735 ... G1T040 N/A
    904936 8vvs:NA (3.1) BS02 rna N/A GO:0003735 ... G1T040 N/A
    904937 8vvs:NA (3.1) BS03 rna N/A GO:0003735 ... G1T040 N/A
    904938 8vvs:NA (3.1) BS04 ZN N/A GO:0003735 ... G1T040 N/A
    904939 8vvs:NB (3.1) BS01 rna N/A GO:0003735 ... G1SP51 N/A
    904940 8vvs:NB (3.1) BS02 rna N/A GO:0003735 ... G1SP51 N/A
    904941 8vvs:O (3.1) BS01 rna N/A GO:0002181 ... G1SCJ6 N/A
    904942 8vvs:O (3.1) BS02 rna N/A GO:0002181 ... G1SCJ6 N/A
    904943 8vvs:OA (3.1) BS01 rna N/A GO:0003735 ... G1SY53 N/A
    904944 8vvs:OA (3.1) BS02 ZN N/A GO:0003735 ... G1SY53 N/A
    904945 8vvs:OB (3.1) BS01 rna N/A GO:0003735 ... G1T1F0 N/A
    904946 8vvs:P (3.1) BS01 rna N/A GO:0003723 ... G1TFE0 N/A
    904947 8vvs:PA (3.1) BS01 rna N/A GO:0003735 ... G1U7L1 N/A
    904948 8vvs:PB (3.1) BS01 rna N/A GO:0000028 ... G1U0Q2 N/A
    904949 8vvs:PB (3.1) BS02 rna N/A GO:0000028 ... G1U0Q2 N/A
    904950 8vvs:Q (3.1) BS01 rna N/A GO:0003723 ... N/A N/A
    904951 8vvs:Q (3.1) BS02 rna N/A GO:0003723 ... N/A N/A
    904952 8vvs:QB (3.1) BS01 rna N/A GO:0000462 ... G1SGX4 N/A
    904953 8vvs:R (3.1) BS01 rna N/A GO:0003735 ... N/A N/A
    904954 8vvs:R (3.1) BS02 rna N/A GO:0003735 ... N/A N/A
    904955 8vvs:RA (3.1) BS01 rna N/A GO:0003735 ... G1SMR7 N/A
    904956 8vvs:RB (3.1) BS01 rna N/A GO:0003735 ... G1TU13 N/A
    904957 8vvs:S (3.1) BS01 rna N/A GO:0003735 ... G1SHQ2 N/A
    904958 8vvs:S (3.1) BS02 rna N/A GO:0003735 ... G1SHQ2 N/A
    904959 8vvs:SB (3.1) BS01 rna N/A GO:0003676 ... G1TPG3 N/A
    904960 8vvs:T (3.1) BS01 rna N/A GO:0002181 ... G1TSG1 N/A
    904961 8vvs:TB (3.1) BS01 rna N/A GO:0000028 ... G1TN62 N/A
    904962 8vvs:U (3.1) BS01 rna N/A GO:0000122 ... G1T6D1 N/A
    904963 8vvs:UB (3.1) BS01 rna N/A GO:0003723 ... G1SIZ2 N/A
    904964 8vvs:V (3.1) BS01 rna N/A GO:0002181 ... G1SE28 N/A
    904965 8vvs:V (3.1) BS02 rna N/A GO:0002181 ... G1SE28 N/A
    904966 8vvs:W (3.1) BS01 rna N/A GO:0003735 ... G1SE76 N/A
    904967 8vvs:W (3.1) BS02 rna N/A GO:0003735 ... G1SE76 N/A
    904968 8vvs:WB (3.1) BS01 rna N/A GO:0003735 ... G1TG89 N/A
    904969 8vvs:X (3.1) BS01 rna N/A GO:0003723 ... G1SQH0 N/A
    904970 8vvs:X (3.1) BS02 rna N/A GO:0003723 ... G1SQH0 N/A
    904971 8vvs:XB (3.1) BS01 rna N/A GO:0003735 ... G1SZ47 N/A
    904972 8vvs:Y (3.1) BS01 rna N/A GO:0002181 ... G1TXF6 N/A
    904973 8vvs:YB (3.1) BS01 rna N/A GO:0003735 ... G1T3D8 N/A
    904974 8vvs:Z (3.1) BS01 rna N/A GO:0003735 ... G1SNY0 N/A
    904975 8vvs:ZB (3.1) BS01 rna N/A GO:0003735 ... G1TDB3 N/A
    904976 8vvs:b (3.1) BS01 rna N/A GO:0000027 ... G1SPK4 N/A
    904977 8vvt:A (2.9) BS01 rna N/A GO:0002181 ... G1TT27 N/A
    904978 8vvt:AA (2.9) BS01 rna N/A GO:0002181 ... G1SGR6 N/A
    904979 8vvt:AB (2.9) BS01 rna N/A GO:0000028 ... G1TLT8 N/A
    904980 8vvt:AC (2.9) BS01 rna N/A GO:0003729 ... G1TFE8 N/A
    904981 8vvt:AC (2.9) BS02 ZN N/A GO:0003729 ... G1TFE8 N/A
    904982 8vvt:B (2.9) BS01 rna N/A GO:0003723 ... G1TL06 N/A
    904983 8vvt:BA (2.9) BS01 rna N/A GO:0003723 ... G1TDL2 N/A
    904984 8vvt:BB (2.9) BS01 rna N/A GO:0003735 ... G1SS70 N/A
    904985 8vvt:BC (2.9) BS01 rna N/A GO:0003735 ... G1TZ76 N/A
    904986 8vvt:C (2.9) BS01 rna N/A GO:0003735 ... A0A5F9C3C5 N/A
    904987 8vvt:C (2.9) BS02 rna N/A GO:0003735 ... A0A5F9C3C5 N/A
    904988 8vvt:CA (2.9) BS01 rna N/A GO:0002181 ... G1SHG0 N/A
    904989 8vvt:CB (2.9) BS01 rna N/A GO:0003723 ... N/A N/A
    904990 8vvt:CC (2.9) BS01 rna N/A GO:0000028 ... G1TIB4 N/A
    904991 8vvt:D (2.9) BS01 rna N/A GO:0000027 ... P19949 N/A
    904992 8vvt:D (2.9) BS02 rna N/A GO:0000027 ... P19949 N/A
    904993 8vvt:DA (2.9) BS01 rna N/A GO:0003735 ... G1TUN8 N/A
    904994 8vvt:DB (2.9) BS01 rna N/A GO:0003723 ... G1TNM3 N/A
    904995 8vvt:DC (2.9) BS01 rna N/A GO:0002181 ... G1U7M4 N/A
    904996 8vvt:DC (2.9) BS02 ZN N/A GO:0002181 ... G1U7M4 N/A
    904997 8vvt:E (2.9) BS01 rna N/A GO:0000027 ... G1SKF7 N/A
    904998 8vvt:EA (2.9) BS01 rna N/A GO:0003735 ... G1SF08 N/A
    904999 8vvt:EB (2.9) BS01 rna N/A GO:0003723 ... G1TK17 N/A
    905000 8vvt:EC (2.9) BS01 rna N/A GO:0003735 ... G1T8A2 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).