SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    904801 8wyt:A (2.7) BS02 ZN N/A N/A N/A 39217277
    904802 8wyu:A (3.2) BS01 ZN N/A N/A N/A 39217277
    904803 8wyw:A (1.9) BS01 XFB N/A N/A P43405 N/A
    904804 8wyw:B (1.9) BS01 XFB N/A N/A P43405 N/A
    904805 8wyx:A (3.5) BS01 ZN N/A N/A N/A 39217277
    904806 8wyy:A (3.1) BS01 ZN N/A N/A N/A 39217277
    904807 8wz2:R (2.73) BS01 peptide N/A GO:0004930 ... Q96P65 38830850
    904808 8wz6:A (2.16) BS01 NAD N/A N/A Q5ZTY7 38735607
    904809 8wz6:A (2.16) BS02 XI6 N/A N/A Q5ZTY7 38735607
    904810 8wz7:A (1.922) BS01 NAD N/A N/A Q5ZTY7 38735607
    904811 8wz7:A (1.922) BS02 ADN N/A N/A Q5ZTY7 38735607
    904812 8wz8:A (2.583) BS01 NAD N/A N/A Q5ZTY7 38735607
    904813 8wz9:A (1.649) BS01 NAD N/A N/A Q5ZTY7 38735607
    904814 8wz9:A (1.649) BS02 ADE N/A N/A Q5ZTY7 38735607
    904815 8wzc:A (1.925) BS01 rna N/A N/A O15037 39167961
    904816 8wzc:A (1.925) BS02 MG N/A N/A O15037 39167961
    904817 8wzc:A (1.925) BS03 MG N/A N/A O15037 39167961
    904818 8wzf:A (1.6) BS01 XTX N/A GO:0003796 ... P00698 38951539
    904819 8wzg:A (1.6) BS01 XTX N/A GO:0003796 ... P00698 38951539
    904820 8wzh:A (3.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    904821 8wzh:A (3.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    904822 8wzh:B (3.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    904823 8wzh:B (3.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    904824 8wzh:C (3.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    904825 8wzh:C (3.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    904826 8wzh:D (3.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    904827 8wzh:D (3.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    904828 8wzj:A (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    904829 8wzj:A (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    904830 8wzj:B (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    904831 8wzj:B (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    904832 8wzj:C (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    904833 8wzj:C (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    904834 8wzj:D (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    904835 8wzj:D (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    904836 8wzk:A (2.4) BS01 HEM N/A GO:0000302 ... P04040 38935342
    904837 8wzk:A (2.4) BS02 NDP N/A GO:0000302 ... P04040 38935342
    904838 8wzk:B (2.4) BS01 HEM N/A GO:0000302 ... P04040 38935342
    904839 8wzk:B (2.4) BS02 NDP N/A GO:0000302 ... P04040 38935342
    904840 8wzk:C (2.4) BS01 HEM N/A GO:0000302 ... P04040 38935342
    904841 8wzk:C (2.4) BS02 NDP N/A GO:0000302 ... P04040 38935342
    904842 8wzk:D (2.4) BS01 HEM N/A GO:0000302 ... P04040 38935342
    904843 8wzk:D (2.4) BS02 NDP N/A GO:0000302 ... P04040 38935342
    904844 8wzm:A (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    904845 8wzm:A (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    904846 8wzm:B (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    904847 8wzm:B (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    904848 8wzm:C (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    904849 8wzm:C (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    904850 8wzm:D (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    904851 8wzm:D (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    904852 8wzn:A (1.8) BS01 ZN N/A GO:0004842 ... O60260 N/A
    904853 8wzn:A (1.8) BS02 ZN N/A GO:0004842 ... O60260 N/A
    904854 8wzn:A (1.8) BS03 ZN N/A GO:0004842 ... O60260 N/A
    904855 8wzn:A (1.8) BS04 ZN N/A GO:0004842 ... O60260 N/A
    904856 8wzn:A (1.8) BS05 ZN N/A GO:0004842 ... O60260 N/A
    904857 8wzn:A (1.8) BS06 ZN N/A GO:0004842 ... O60260 N/A
    904858 8wzn:A (1.8) BS07 ZN N/A GO:0004842 ... O60260 N/A
    904859 8wzn:A (1.8) BS08 ZN N/A GO:0004842 ... O60260 N/A
    904860 8wzo:A (2.25) BS01 ZN N/A GO:0004842 ... O60260 N/A
    904861 8wzo:A (2.25) BS02 ZN N/A GO:0004842 ... O60260 N/A
    904862 8wzo:A (2.25) BS03 ZN N/A GO:0004842 ... O60260 N/A
    904863 8wzo:A (2.25) BS04 ZN N/A GO:0004842 ... O60260 N/A
    904864 8wzo:A (2.25) BS05 ZN N/A GO:0004842 ... O60260 N/A
    904865 8wzo:A (2.25) BS06 ZN N/A GO:0004842 ... O60260 N/A
    904866 8wzo:A (2.25) BS07 ZN N/A GO:0004842 ... O60260 N/A
    904867 8wzo:A (2.25) BS08 ZN N/A GO:0004842 ... O60260 N/A
    904868 8wzp:B (1.76) BS01 XIU 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0008233 ... P0DTD1 38056159
    904869 8wzq:A (1.66) BS01 XIU 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38056159
    904870 8wzq:B (1.66) BS01 XIU 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38056159
    904871 8wzr:A (1.6) BS01 XTX N/A GO:0003796 ... P00698 38951539
    904872 8wzt:A (1.6) BS01 XTX N/A GO:0003796 ... P00698 38951539
    904873 8wzv:A (1.6) BS01 XTX N/A GO:0003796 ... P00698 38951539
    904874 8wzy:A (1.87) BS01 ZN N/A N/A N/A N/A
    904875 8wzy:A (1.87) BS02 ZN N/A N/A N/A N/A
    904876 8x01:A (3.01) BS01 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0001172 ... C0JJA4 38760379
    904877 8x01:A (3.01) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0001172 ... C0JJA4 38760379
    904878 8x05:A (1.13) BS01 GLC N/A N/A Q02321 N/A
    904879 8x05:A (1.13) BS02 BGC N/A N/A Q02321 N/A
    904880 8x05:A (1.13) BS03 BGC N/A N/A Q02321 N/A
    904881 8x09:A (1.65) BS01 MGL N/A N/A Q02321 N/A
    904882 8x09:A (1.65) BS02 SGC N/A N/A Q02321 N/A
    904883 8x09:A (1.65) BS03 BGC N/A N/A Q02321 N/A
    904884 8x09:A (1.65) BS04 BGC N/A N/A Q02321 N/A
    904885 8x0b:A (3.1) BS01 QUS N/A N/A P41594 39805839
    904886 8x0b:A (3.1) BS02 XQT N/A N/A P41594 39805839
    904887 8x0b:B (3.1) BS01 QUS N/A N/A P41594 39805839
    904888 8x0b:B (3.1) BS02 XQT N/A N/A P41594 39805839
    904889 8x0c:A (3.2) BS01 QUS N/A N/A P41594 39805839
    904890 8x0c:A (3.2) BS02 XQT N/A N/A P41594 39805839
    904891 8x0c:B (3.2) BS01 QUS N/A N/A P41594 39805839
    904892 8x0c:B (3.2) BS02 XQT N/A N/A P41594 39805839
    904893 8x0d:A (3.5) BS01 QUS N/A N/A P41594 39805839
    904894 8x0d:A (3.5) BS02 XQT N/A N/A P41594 39805839
    904895 8x0d:B (3.5) BS01 QUS N/A N/A P41594 39805839
    904896 8x0d:B (3.5) BS02 XQT N/A N/A P41594 39805839
    904897 8x0e:A (3.4) BS01 QUS N/A N/A P41594 39805839
    904898 8x0e:B (3.4) BS01 QUS N/A N/A P41594 39805839
    904899 8x0f:A (3.3) BS01 QUS N/A N/A P41594 39805839
    904900 8x0f:A (3.3) BS02 XRQ N/A N/A P41594 39805839
    904901 8x0f:B (3.3) BS01 QUS N/A N/A P41594 39805839
    904902 8x0g:A (3.0) BS01 QUS N/A N/A P41594 39805839
    904903 8x0g:B (3.0) BS01 QUS N/A N/A P41594 39805839
    904904 8x0h:A (4.1) BS01 QUS N/A N/A P41594 39805839
    904905 8x0h:B (4.1) BS01 QUS N/A N/A P41594 39805839
    904906 8x0i:A (1.08) BS01 IDC N/A N/A Q02321 N/A
    904907 8x0k:D (3.5) BS01 CA N/A N/A P98155 N/A
    904908 8x0k:H (3.5) BS01 CA N/A N/A P98155 N/A
    904909 8x0k:L (3.5) BS01 CA N/A N/A P98155 N/A
    904910 8x0k:P (3.5) BS01 CA N/A N/A P98155 N/A
    904911 8x0l:D (3.5) BS01 CA N/A N/A P98155 N/A
    904912 8x0l:H (3.5) BS01 CA N/A N/A P98155 N/A
    904913 8x0l:L (3.5) BS01 CA N/A N/A P98155 N/A
    904914 8x0m:D (3.5) BS01 CA N/A N/A P98155 N/A
    904915 8x0m:H (3.5) BS01 CA N/A N/A P98155 N/A
    904916 8x0n:A (2.8) BS01 rna N/A N/A P09651 39313323
    904917 8x0o:A (3.35) BS01 TYR N/A N/A P54769 N/A
    904918 8x0o:A (3.35) BS02 TYR N/A N/A P54769 N/A
    904919 8x0o:B (3.35) BS01 TYR N/A N/A P54769 N/A
    904920 8x0o:C (3.35) BS01 TYR N/A N/A P54769 N/A
    904921 8x0o:D (3.35) BS01 TYR N/A N/A P54769 N/A
    904922 8x0o:D (3.35) BS02 TYR N/A N/A P54769 N/A
    904923 8x0p:A (3.35) BS01 PLP N/A N/A P54769 N/A
    904924 8x0p:A (3.35) BS02 142 N/A N/A P54769 N/A
    904925 8x0p:A (3.35) BS03 142 N/A N/A P54769 N/A
    904926 8x0p:B (3.35) BS01 142 N/A N/A P54769 N/A
    904927 8x0p:B (3.35) BS02 PLP N/A N/A P54769 N/A
    904928 8x0p:B (3.35) BS03 142 N/A N/A P54769 N/A
    904929 8x0p:C (3.35) BS01 PLP N/A N/A P54769 N/A
    904930 8x0p:C (3.35) BS02 142 N/A N/A P54769 N/A
    904931 8x0p:C (3.35) BS03 142 N/A N/A P54769 N/A
    904932 8x0p:D (3.35) BS01 142 N/A N/A P54769 N/A
    904933 8x0p:D (3.35) BS02 PLP N/A N/A P54769 N/A
    904934 8x0p:D (3.35) BS03 142 N/A N/A P54769 N/A
    904935 8x0p:E (3.35) BS01 PLP N/A N/A P54769 N/A
    904936 8x0p:E (3.35) BS02 142 N/A N/A P54769 N/A
    904937 8x0p:E (3.35) BS03 142 N/A N/A P54769 N/A
    904938 8x0p:F (3.35) BS01 142 N/A N/A P54769 N/A
    904939 8x0p:F (3.35) BS02 PLP N/A N/A P54769 N/A
    904940 8x0p:F (3.35) BS03 142 N/A N/A P54769 N/A
    904941 8x0q:A (1.0) BS01 BGC N/A N/A Q02321 N/A
    904942 8x0q:A (1.0) BS02 BGC N/A N/A Q02321 N/A
    904943 8x0q:A (1.0) BS03 BGC N/A N/A Q02321 N/A
    904944 8x0q:A (1.0) BS04 GLC N/A N/A Q02321 N/A
    904945 8x0v:A (2.4) BS01 XP3 N/A N/A A0A084QTE3 N/A
    904946 8x0v:B (2.4) BS01 XP3 N/A N/A A0A084QTE3 N/A
    904947 8x0v:C (2.4) BS01 XP3 N/A N/A A0A084QTE3 N/A
    904948 8x0v:D (2.4) BS01 XP3 N/A N/A A0A084QTE3 N/A
    904949 8x0v:E (2.4) BS01 XP3 N/A N/A A0A084QTE3 N/A
    904950 8x0v:F (2.4) BS01 XP3 N/A N/A A0A084QTE3 N/A
    904951 8x0v:G (2.4) BS01 XP3 N/A N/A A0A084QTE3 N/A
    904952 8x0v:H (2.4) BS01 XP3 N/A N/A A0A084QTE3 N/A
    904953 8x0v:I (2.4) BS01 XP3 N/A N/A A0A084QTE3 N/A
    904954 8x0v:J (2.4) BS01 XP3 N/A N/A A0A084QTE3 N/A
    904955 8x0v:K (2.4) BS01 XP3 N/A N/A A0A084QTE3 N/A
    904956 8x0v:L (2.4) BS01 XP3 N/A N/A A0A084QTE3 N/A
    904957 8x0w:B (3.1) BS01 LEU N/A GO:0002720 ... Q01650 N/A
    904958 8x15:A (3.2) BS01 dna ? GO:0000786 ... Q93077 38331872
    904959 8x15:A (3.2) BS02 dna ? GO:0000786 ... Q93077 38331872
    904960 8x15:B (3.2) BS01 dna ? GO:0000786 ... P62807 38331872
    904961 8x15:B (3.2) BS02 dna ? GO:0000786 ... P62807 38331872
    904962 8x15:C (3.2) BS01 dna ? GO:0000786 ... P68431 38331872
    904963 8x15:C (3.2) BS02 dna ? GO:0000786 ... P68431 38331872
    904964 8x15:D (3.2) BS01 dna ? GO:0000781 ... P62805 38331872
    904965 8x15:E (3.2) BS01 dna ? GO:0000786 ... Q93077 38331872
    904966 8x15:E (3.2) BS02 dna ? GO:0000786 ... Q93077 38331872
    904967 8x15:F (3.2) BS01 dna ? GO:0000786 ... P62807 38331872
    904968 8x15:F (3.2) BS02 dna ? GO:0000786 ... P62807 38331872
    904969 8x15:G (3.2) BS01 dna ? GO:0000786 ... P68431 38331872
    904970 8x15:G (3.2) BS02 dna ? GO:0000786 ... P68431 38331872
    904971 8x15:H (3.2) BS01 dna ? GO:0000781 ... P62805 38331872
    904972 8x15:H (3.2) BS02 dna ? GO:0000781 ... P62805 38331872
    904973 8x15:I (3.2) BS01 dna 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    904974 8x15:I (3.2) BS02 dna 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    904975 8x15:J (3.2) BS01 dna ? GO:0000122 ... Q15906 38331872
    904976 8x15:M (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    904977 8x15:N (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    904978 8x15:O (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    904979 8x15:O (3.2) BS02 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    904980 8x15:P (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    904981 8x15:Q (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    904982 8x15:R (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    904983 8x15:T (3.2) BS01 ATP ? GO:0000723 ... O96019 38331872
    904984 8x15:U (3.2) BS01 ATP 3.6.4.- GO:0000776 ... P60709 38331872
    904985 8x15:V (3.2) BS01 dna ? GO:0000122 ... Q9NPF5 38331872
    904986 8x16:R (3.29) BS01 Q8L ? GO:0001609 ... P0DMS8 38627384
    904987 8x17:R (3.19) BS01 XS0 ? GO:0001609 ... P0DMS8 38627384
    904988 8x18:A (2.25) BS01 BGC N/A N/A Q8P3C6 N/A
    904989 8x18:A (2.25) BS02 BGC N/A N/A Q8P3C6 N/A
    904990 8x18:A (2.25) BS03 BGC N/A N/A Q8P3C6 N/A
    904991 8x18:A (2.25) BS04 BGC N/A N/A Q8P3C6 N/A
    904992 8x18:B (2.25) BS01 BGC N/A N/A Q8P3C6 N/A
    904993 8x18:B (2.25) BS02 BGC N/A N/A Q8P3C6 N/A
    904994 8x18:B (2.25) BS03 BGC N/A N/A Q8P3C6 N/A
    904995 8x18:B (2.25) BS04 BGC N/A N/A Q8P3C6 N/A
    904996 8x18:B (2.25) BS05 BGC N/A N/A Q8P3C6 N/A
    904997 8x18:B (2.25) BS06 BGC N/A N/A Q8P3C6 N/A
    904998 8x18:B (2.25) BS07 BGC N/A N/A Q8P3C6 N/A
    904999 8x18:B (2.25) BS08 BGC N/A N/A Q8P3C6 N/A
    905000 8x18:B (2.25) BS09 BGC N/A N/A Q8P3C6 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).