SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    905001 8vvt:F (2.9) BS01 rna N/A GO:0000463 ... G1TUB1 N/A
    905002 8vvt:F (2.9) BS02 rna N/A GO:0000463 ... G1TUB1 N/A
    905003 8vvt:FA (2.9) BS01 rna N/A GO:0003735 ... G1TXG5 N/A
    905004 8vvt:FA (2.9) BS02 ZN N/A GO:0003735 ... G1TXG5 N/A
    905005 8vvt:FA (2.9) BS03 MG N/A GO:0003735 ... G1TXG5 N/A
    905006 8vvt:FB (2.9) BS01 rna N/A GO:0003723 ... G1TFM5 N/A
    905007 8vvt:FC (2.9) BS01 rna N/A GO:0003735 ... G1SK22 N/A
    905008 8vvt:FC (2.9) BS02 ZN N/A GO:0003735 ... G1SK22 N/A
    905009 8vvt:G (2.9) BS01 rna N/A GO:0003723 ... G1STW0 N/A
    905010 8vvt:G (2.9) BS02 rna N/A GO:0003723 ... G1STW0 N/A
    905011 8vvt:GA (2.9) BS01 rna N/A GO:0000463 ... G1SIT5 N/A
    905012 8vvt:GA (2.9) BS02 rna N/A GO:0000463 ... G1SIT5 N/A
    905013 8vvt:GB (2.9) BS01 rna N/A GO:0003735 ... G1TM55 N/A
    905014 8vvt:GC (2.9) BS01 rna N/A GO:0001891 ... G1SJB4 N/A
    905015 8vvt:H (2.9) BS01 rna N/A GO:0002181 ... G1SWI6 N/A
    905016 8vvt:HA (2.9) BS01 rna N/A GO:0003735 ... G1TTQ5 N/A
    905017 8vvt:HB (2.9) BS01 rna N/A GO:0003735 ... G1SVB0 N/A
    905018 8vvt:I (2.9) BS01 rna N/A GO:0003735 ... B7NZQ2 N/A
    905019 8vvt:I (2.9) BS02 rna N/A GO:0003735 ... B7NZQ2 N/A
    905020 8vvt:IA (2.9) BS01 rna N/A GO:0002181 ... U3KPD5 N/A
    905021 8vvt:IA (2.9) BS02 rna N/A GO:0002181 ... U3KPD5 N/A
    905022 8vvt:IA (2.9) BS03 ZN N/A GO:0002181 ... U3KPD5 N/A
    905023 8vvt:IB (2.9) BS01 rna N/A GO:0003735 ... G1TJW1 N/A
    905024 8vvt:J (2.9) BS01 rna N/A GO:0003735 ... G1TUB8 N/A
    905025 8vvt:J (2.9) BS02 rna N/A GO:0003735 ... G1TUB8 N/A
    905026 8vvt:JA (2.9) BS01 rna N/A GO:0003735 ... G1U001 N/A
    905027 8vvt:JB (2.9) BS01 rna N/A GO:0003723 ... B7NZS8 N/A
    905028 8vvt:K (2.9) BS01 rna N/A GO:0003735 ... N/A N/A
    905029 8vvt:K (2.9) BS02 rna N/A GO:0003735 ... N/A N/A
    905030 8vvt:KA (2.9) BS01 rna N/A GO:0003735 ... G1TTN1 N/A
    905031 8vvt:KA (2.9) BS02 rna N/A GO:0003735 ... G1TTN1 N/A
    905032 8vvt:KB (2.9) BS01 rna N/A GO:0003723 ... G1TPV3 N/A
    905033 8vvt:L (2.9) BS01 rna N/A GO:0003723 ... G1SZ12 N/A
    905034 8vvt:LA (2.9) BS01 rna N/A GO:0003735 ... N/A N/A
    905035 8vvt:LA (2.9) BS02 ZN N/A GO:0003735 ... N/A N/A
    905036 8vvt:LB (2.9) BS01 rna N/A GO:0003735 ... G1TRM4 N/A
    905037 8vvt:M (2.9) BS01 rna N/A GO:0002181 ... G1T0C1 N/A
    905038 8vvt:M (2.9) BS02 rna N/A GO:0002181 ... G1T0C1 N/A
    905039 8vvt:MB (2.9) BS01 rna N/A GO:0003735 ... G1SFR8 N/A
    905040 8vvt:N (2.9) BS01 rna N/A GO:0003735 ... N/A N/A
    905041 8vvt:NA (2.9) BS01 rna N/A GO:0003735 ... G1T040 N/A
    905042 8vvt:NA (2.9) BS02 ZN N/A GO:0003735 ... G1T040 N/A
    905043 8vvt:NB (2.9) BS01 rna N/A GO:0003735 ... G1SP51 N/A
    905044 8vvt:O (2.9) BS01 rna N/A GO:0002181 ... G1SCJ6 N/A
    905045 8vvt:O (2.9) BS02 rna N/A GO:0002181 ... G1SCJ6 N/A
    905046 8vvt:OA (2.9) BS01 rna N/A GO:0003735 ... G1SY53 N/A
    905047 8vvt:OA (2.9) BS02 ZN N/A GO:0003735 ... G1SY53 N/A
    905048 8vvt:OB (2.9) BS01 rna N/A GO:0003735 ... G1T1F0 N/A
    905049 8vvt:P (2.9) BS01 rna N/A GO:0003723 ... G1TFE0 N/A
    905050 8vvt:PA (2.9) BS01 rna N/A GO:0003735 ... G1U7L1 N/A
    905051 8vvt:PB (2.9) BS01 rna N/A GO:0000028 ... G1U0Q2 N/A
    905052 8vvt:Q (2.9) BS01 rna N/A GO:0003723 ... G1TJR3 N/A
    905053 8vvt:Q (2.9) BS02 rna N/A GO:0003723 ... G1TJR3 N/A
    905054 8vvt:QA (2.9) BS01 rna N/A GO:0000027 ... G1SPK4 N/A
    905055 8vvt:QB (2.9) BS01 rna N/A GO:0000462 ... G1SGX4 N/A
    905056 8vvt:R (2.9) BS01 rna N/A GO:0003735 ... G1TTY7 N/A
    905057 8vvt:R (2.9) BS02 rna N/A GO:0003735 ... G1TTY7 N/A
    905058 8vvt:RA (2.9) BS01 rna N/A GO:0003735 ... G1SMR7 N/A
    905059 8vvt:RB (2.9) BS01 rna N/A GO:0003735 ... G1TU13 N/A
    905060 8vvt:S (2.9) BS01 rna N/A GO:0003735 ... G1SHQ2 N/A
    905061 8vvt:S (2.9) BS02 rna N/A GO:0003735 ... G1SHQ2 N/A
    905062 8vvt:SB (2.9) BS01 rna N/A GO:0003676 ... G1TPG3 N/A
    905063 8vvt:T (2.9) BS01 rna N/A GO:0002181 ... G1TSG1 N/A
    905064 8vvt:TB (2.9) BS01 rna N/A GO:0000028 ... G1TN62 N/A
    905065 8vvt:TB (2.9) BS02 MG N/A GO:0000028 ... G1TN62 N/A
    905066 8vvt:U (2.9) BS01 rna N/A GO:0000122 ... G1T6D1 N/A
    905067 8vvt:UB (2.9) BS01 rna N/A GO:0003723 ... G1SIZ2 N/A
    905068 8vvt:V (2.9) BS01 rna N/A GO:0002181 ... G1SE28 N/A
    905069 8vvt:W (2.9) BS01 rna N/A GO:0003735 ... G1SE76 N/A
    905070 8vvt:W (2.9) BS02 rna N/A GO:0003735 ... G1SE76 N/A
    905071 8vvt:WB (2.9) BS01 rna N/A GO:0003735 ... G1TG89 N/A
    905072 8vvt:X (2.9) BS01 rna N/A GO:0003723 ... G1SQH0 N/A
    905073 8vvt:X (2.9) BS02 rna N/A GO:0003723 ... G1SQH0 N/A
    905074 8vvt:XB (2.9) BS01 rna N/A GO:0003735 ... G1SZ47 N/A
    905075 8vvt:Y (2.9) BS01 rna N/A GO:0002181 ... G1TXF6 N/A
    905076 8vvt:YB (2.9) BS01 rna N/A GO:0003735 ... G1T3D8 N/A
    905077 8vvt:Z (2.9) BS01 rna N/A GO:0003735 ... G1SNY0 N/A
    905078 8vvt:ZB (2.9) BS01 rna N/A GO:0003735 ... G1TDB3 N/A
    905079 8vvt:b (2.9) BS01 rna N/A N/A N/A N/A
    905080 8vvt:v (2.9) BS01 rna N/A GO:0003924 ... N/A N/A
    905081 8vvt:v (2.9) BS02 rna N/A GO:0003924 ... N/A N/A
    905082 8vvt:v (2.9) BS03 GDP N/A GO:0003924 ... N/A N/A
    905083 8vvt:w (2.9) BS01 rna N/A GO:0003723 ... N/A N/A
    905084 8vvu:A (3.8) BS01 rna N/A GO:0002181 ... G1TT27 N/A
    905085 8vvu:AA (3.8) BS01 rna N/A GO:0002181 ... G1SGR6 N/A
    905086 8vvu:AB (3.8) BS01 rna N/A GO:0000028 ... G1TLT8 N/A
    905087 8vvu:AC (3.8) BS01 rna N/A GO:0003729 ... G1TFE8 N/A
    905088 8vvu:AC (3.8) BS02 ZN N/A GO:0003729 ... G1TFE8 N/A
    905089 8vvu:B (3.8) BS01 rna N/A GO:0003723 ... G1TL06 N/A
    905090 8vvu:BA (3.8) BS01 rna N/A GO:0003723 ... G1TDL2 N/A
    905091 8vvu:BB (3.8) BS01 rna N/A GO:0003735 ... G1SS70 N/A
    905092 8vvu:BC (3.8) BS01 rna N/A GO:0003735 ... G1TZ76 N/A
    905093 8vvu:C (3.8) BS01 rna N/A GO:0003735 ... G1SVW5 N/A
    905094 8vvu:C (3.8) BS02 rna N/A GO:0003735 ... G1SVW5 N/A
    905095 8vvu:CA (3.8) BS01 rna N/A GO:0002181 ... G1SHG0 N/A
    905096 8vvu:CB (3.8) BS01 rna N/A GO:0003723 ... N/A N/A
    905097 8vvu:CC (3.8) BS01 rna N/A GO:0000028 ... G1TIB4 N/A
    905098 8vvu:D (3.8) BS01 rna N/A GO:0000027 ... P19949 N/A
    905099 8vvu:D (3.8) BS02 rna N/A GO:0000027 ... P19949 N/A
    905100 8vvu:DA (3.8) BS01 rna N/A GO:0003735 ... G1TUN8 N/A
    905101 8vvu:DB (3.8) BS01 rna N/A GO:0003723 ... G1TNM3 N/A
    905102 8vvu:DC (3.8) BS01 rna N/A GO:0002181 ... G1U7M4 N/A
    905103 8vvu:DC (3.8) BS02 ZN N/A GO:0002181 ... G1U7M4 N/A
    905104 8vvu:E (3.8) BS01 rna N/A GO:0000027 ... G1SKF7 N/A
    905105 8vvu:EA (3.8) BS01 rna N/A GO:0003735 ... G1SF08 N/A
    905106 8vvu:EB (3.8) BS01 rna N/A GO:0003723 ... G1TK17 N/A
    905107 8vvu:EC (3.8) BS01 rna N/A GO:0003735 ... G1T8A2 N/A
    905108 8vvu:F (3.8) BS01 rna N/A GO:0000463 ... G1SV32 N/A
    905109 8vvu:F (3.8) BS02 rna N/A GO:0000463 ... G1SV32 N/A
    905110 8vvu:FA (3.8) BS01 rna N/A GO:0003735 ... G1TXG5 N/A
    905111 8vvu:FA (3.8) BS02 ZN N/A GO:0003735 ... G1TXG5 N/A
    905112 8vvu:FB (3.8) BS01 rna N/A GO:0003723 ... G1TFM5 N/A
    905113 8vvu:FB (3.8) BS02 rna N/A GO:0003723 ... G1TFM5 N/A
    905114 8vvu:FC (3.8) BS01 rna N/A GO:0003735 ... G1SK22 N/A
    905115 8vvu:FC (3.8) BS02 ZN N/A GO:0003735 ... G1SK22 N/A
    905116 8vvu:G (3.8) BS01 rna N/A GO:0003723 ... G1STW0 N/A
    905117 8vvu:G (3.8) BS02 rna N/A GO:0003723 ... G1STW0 N/A
    905118 8vvu:GA (3.8) BS01 rna N/A GO:0000463 ... G1SIT5 N/A
    905119 8vvu:GA (3.8) BS02 rna N/A GO:0000463 ... G1SIT5 N/A
    905120 8vvu:GB (3.8) BS01 rna N/A GO:0003735 ... G1TM55 N/A
    905121 8vvu:GC (3.8) BS01 rna N/A GO:0001891 ... G1SJB4 N/A
    905122 8vvu:H (3.8) BS01 rna N/A GO:0002181 ... G1SWI6 N/A
    905123 8vvu:HA (3.8) BS01 rna N/A GO:0003735 ... G1TTQ5 N/A
    905124 8vvu:HB (3.8) BS01 rna N/A GO:0003735 ... G1SVB0 N/A
    905125 8vvu:I (3.8) BS01 rna N/A GO:0003735 ... B7NZQ2 N/A
    905126 8vvu:I (3.8) BS02 rna N/A GO:0003735 ... B7NZQ2 N/A
    905127 8vvu:IA (3.8) BS01 rna N/A GO:0002181 ... U3KPD5 N/A
    905128 8vvu:IA (3.8) BS02 rna N/A GO:0002181 ... U3KPD5 N/A
    905129 8vvu:IA (3.8) BS03 ZN N/A GO:0002181 ... U3KPD5 N/A
    905130 8vvu:IB (3.8) BS01 rna N/A GO:0003735 ... G1TJW1 N/A
    905131 8vvu:J (3.8) BS01 rna N/A GO:0003735 ... G1TUB8 N/A
    905132 8vvu:J (3.8) BS02 rna N/A GO:0003735 ... G1TUB8 N/A
    905133 8vvu:J (3.8) BS03 rna N/A GO:0003735 ... G1TUB8 N/A
    905134 8vvu:JA (3.8) BS01 rna N/A GO:0003735 ... G1U001 N/A
    905135 8vvu:JB (3.8) BS01 rna N/A GO:0003723 ... B7NZS8 N/A
    905136 8vvu:K (3.8) BS01 rna N/A GO:0003735 ... N/A N/A
    905137 8vvu:K (3.8) BS02 rna N/A GO:0003735 ... N/A N/A
    905138 8vvu:KA (3.8) BS01 rna N/A GO:0003735 ... G1TTN1 N/A
    905139 8vvu:KA (3.8) BS02 rna N/A GO:0003735 ... G1TTN1 N/A
    905140 8vvu:KB (3.8) BS01 rna N/A GO:0003723 ... G1TPV3 N/A
    905141 8vvu:L (3.8) BS01 rna N/A GO:0003723 ... G1SZ12 N/A
    905142 8vvu:LA (3.8) BS01 rna N/A GO:0003735 ... N/A N/A
    905143 8vvu:LA (3.8) BS02 ZN N/A GO:0003735 ... N/A N/A
    905144 8vvu:LB (3.8) BS01 rna N/A GO:0003735 ... G1TRM4 N/A
    905145 8vvu:M (3.8) BS01 rna N/A GO:0002181 ... G1T0C1 N/A
    905146 8vvu:M (3.8) BS02 rna N/A GO:0002181 ... G1T0C1 N/A
    905147 8vvu:MB (3.8) BS01 rna N/A GO:0003735 ... G1SFR8 N/A
    905148 8vvu:N (3.8) BS01 rna N/A GO:0003735 ... N/A N/A
    905149 8vvu:NA (3.8) BS01 rna N/A GO:0003735 ... G1T040 N/A
    905150 8vvu:NA (3.8) BS02 rna N/A GO:0003735 ... G1T040 N/A
    905151 8vvu:NA (3.8) BS03 ZN N/A GO:0003735 ... G1T040 N/A
    905152 8vvu:NB (3.8) BS01 rna N/A GO:0003735 ... G1SP51 N/A
    905153 8vvu:O (3.8) BS01 rna N/A GO:0002181 ... G1SCJ6 N/A
    905154 8vvu:O (3.8) BS02 rna N/A GO:0002181 ... G1SCJ6 N/A
    905155 8vvu:OA (3.8) BS01 rna N/A GO:0003735 ... G1SY53 N/A
    905156 8vvu:OA (3.8) BS02 ZN N/A GO:0003735 ... G1SY53 N/A
    905157 8vvu:OB (3.8) BS01 rna N/A GO:0003735 ... G1T1F0 N/A
    905158 8vvu:P (3.8) BS01 rna N/A GO:0003723 ... G1TFE0 N/A
    905159 8vvu:PA (3.8) BS01 rna N/A GO:0003735 ... G1U7L1 N/A
    905160 8vvu:PB (3.8) BS01 rna N/A GO:0000028 ... G1U0Q2 N/A
    905161 8vvu:PB (3.8) BS02 rna N/A GO:0000028 ... G1U0Q2 N/A
    905162 8vvu:Q (3.8) BS01 rna N/A GO:0003723 ... N/A N/A
    905163 8vvu:Q (3.8) BS02 rna N/A GO:0003723 ... N/A N/A
    905164 8vvu:QB (3.8) BS01 rna N/A GO:0000462 ... G1SGX4 N/A
    905165 8vvu:R (3.8) BS01 rna N/A GO:0003735 ... N/A N/A
    905166 8vvu:R (3.8) BS02 rna N/A GO:0003735 ... N/A N/A
    905167 8vvu:RA (3.8) BS01 rna N/A GO:0003735 ... G1SMR7 N/A
    905168 8vvu:RB (3.8) BS01 rna N/A GO:0003735 ... G1TU13 N/A
    905169 8vvu:S (3.8) BS01 rna N/A GO:0003735 ... G1SHQ2 N/A
    905170 8vvu:S (3.8) BS02 rna N/A GO:0003735 ... G1SHQ2 N/A
    905171 8vvu:SB (3.8) BS01 rna N/A GO:0003676 ... G1TPG3 N/A
    905172 8vvu:T (3.8) BS01 rna N/A GO:0002181 ... G1TSG1 N/A
    905173 8vvu:TB (3.8) BS01 rna N/A GO:0000028 ... G1TN62 N/A
    905174 8vvu:U (3.8) BS01 rna N/A GO:0000122 ... G1T6D1 N/A
    905175 8vvu:U (3.8) BS02 rna N/A GO:0000122 ... G1T6D1 N/A
    905176 8vvu:UB (3.8) BS01 rna N/A GO:0003723 ... G1SIZ2 N/A
    905177 8vvu:V (3.8) BS01 rna N/A GO:0002181 ... G1SE28 N/A
    905178 8vvu:V (3.8) BS02 rna N/A GO:0002181 ... G1SE28 N/A
    905179 8vvu:W (3.8) BS01 rna N/A GO:0003735 ... G1SE76 N/A
    905180 8vvu:W (3.8) BS02 rna N/A GO:0003735 ... G1SE76 N/A
    905181 8vvu:WB (3.8) BS01 rna N/A GO:0003735 ... G1TG89 N/A
    905182 8vvu:X (3.8) BS01 rna N/A GO:0003723 ... G1SQH0 N/A
    905183 8vvu:X (3.8) BS02 rna N/A GO:0003723 ... G1SQH0 N/A
    905184 8vvu:XB (3.8) BS01 rna N/A GO:0003735 ... G1SZ47 N/A
    905185 8vvu:Y (3.8) BS01 rna N/A GO:0002181 ... G1TXF6 N/A
    905186 8vvu:YB (3.8) BS01 rna N/A GO:0003735 ... G1T3D8 N/A
    905187 8vvu:Z (3.8) BS01 rna N/A GO:0003735 ... G1SNY0 N/A
    905188 8vvu:ZB (3.8) BS01 rna N/A GO:0003735 ... G1TDB3 N/A
    905189 8vvu:b (3.8) BS01 rna N/A GO:0000027 ... G1SPK4 N/A
    905190 8vvv:A (3.1) BS01 rna N/A GO:0002181 ... G1TT27 N/A
    905191 8vvv:A (3.1) BS02 rna N/A GO:0002181 ... G1TT27 N/A
    905192 8vvv:AA (3.1) BS01 rna N/A GO:0000028 ... G1TLT8 N/A
    905193 8vvv:B (3.1) BS01 rna N/A GO:0003723 ... G1TL06 N/A
    905194 8vvv:BB (3.1) BS01 rna N/A GO:0003735 ... G1SS70 N/A
    905195 8vvv:C (3.1) BS01 rna N/A GO:0003735 ... G1SVW5 N/A
    905196 8vvv:C (3.1) BS02 rna N/A GO:0003735 ... G1SVW5 N/A
    905197 8vvv:CC (3.1) BS01 rna N/A GO:0003723 ... N/A N/A
    905198 8vvv:D (3.1) BS01 rna N/A GO:0000027 ... P19949 N/A
    905199 8vvv:D (3.1) BS02 rna N/A GO:0000027 ... P19949 N/A
    905200 8vvv:DD (3.1) BS01 rna N/A GO:0003723 ... G1TNM3 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).