SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    905201 8x3u:D (2.58) BS01 GLC N/A GO:0000166 ... Q8DIJ4 N/A
    905202 8x3u:D (2.58) BS02 GLC N/A GO:0000166 ... Q8DIJ4 N/A
    905203 8x3u:D (2.58) BS03 UDP N/A GO:0000166 ... Q8DIJ4 N/A
    905204 8x3v:A (2.9) BS01 ATP N/A GO:0003723 ... P03304 N/A
    905205 8x3v:B (2.9) BS01 ATP N/A GO:0003723 ... P03304 N/A
    905206 8x3w:A (2.01) BS01 ZN N/A GO:0000154 ... O59487 39146930
    905207 8x3w:A (2.01) BS02 ZN N/A GO:0000154 ... O59487 39146930
    905208 8x3w:A (2.01) BS03 SO3 N/A GO:0000154 ... O59487 39146930
    905209 8x3w:A (2.01) BS04 SO3 N/A GO:0000154 ... O59487 39146930
    905210 8x3w:A (2.01) BS05 SO3 N/A GO:0000154 ... O59487 39146930
    905211 8x3w:A (2.01) BS06 ARG N/A GO:0000154 ... O59487 39146930
    905212 8x3w:B (2.01) BS01 SO3 N/A GO:0000154 ... O59487 39146930
    905213 8x3w:B (2.01) BS02 ZN N/A GO:0000154 ... O59487 39146930
    905214 8x3w:B (2.01) BS03 SO3 N/A GO:0000154 ... O59487 39146930
    905215 8x3w:B (2.01) BS04 ARG N/A GO:0000154 ... O59487 39146930
    905216 8x3x:A (2.15) BS01 TPP N/A N/A N/A N/A
    905217 8x3x:A (2.15) BS02 ADP N/A N/A N/A N/A
    905218 8x3x:A (2.15) BS03 ENO N/A N/A N/A N/A
    905219 8x3x:A (2.15) BS04 MG N/A N/A N/A N/A
    905220 8x3x:A (2.15) BS05 TPP N/A N/A N/A N/A
    905221 8x3x:A (2.15) BS06 ENO N/A N/A N/A N/A
    905222 8x3x:B (2.15) BS01 TPP N/A N/A N/A N/A
    905223 8x3x:B (2.15) BS02 ENO N/A N/A N/A N/A
    905224 8x3x:B (2.15) BS03 TPP N/A N/A N/A N/A
    905225 8x3x:B (2.15) BS04 ADP N/A N/A N/A N/A
    905226 8x3x:B (2.15) BS05 ENO N/A N/A N/A N/A
    905227 8x3x:B (2.15) BS06 MG N/A N/A N/A N/A
    905228 8x3y:A (2.15) BS01 ADP N/A N/A N/A N/A
    905229 8x3y:A (2.15) BS02 TPP N/A N/A N/A N/A
    905230 8x3y:A (2.15) BS03 MG N/A N/A N/A N/A
    905231 8x3y:A (2.15) BS04 TPP N/A N/A N/A N/A
    905232 8x3y:B (2.15) BS01 TPP N/A N/A N/A N/A
    905233 8x3y:B (2.15) BS02 ADP N/A N/A N/A N/A
    905234 8x3y:B (2.15) BS03 TPP N/A N/A N/A N/A
    905235 8x3y:B (2.15) BS04 MG N/A N/A N/A N/A
    905236 8x3z:A (2.75) BS01 ADP N/A N/A A0A264W1B9 N/A
    905237 8x3z:A (2.75) BS02 TPP N/A N/A A0A264W1B9 N/A
    905238 8x3z:B (2.75) BS01 TPP N/A N/A A0A264W1B9 N/A
    905239 8x3z:B (2.75) BS02 ADP N/A N/A A0A264W1B9 N/A
    905240 8x3z:B (2.75) BS03 MG N/A N/A A0A264W1B9 N/A
    905241 8x41:A (2.35) BS01 MTA N/A GO:0000154 ... O59487 39146930
    905242 8x41:A (2.35) BS02 ADN N/A GO:0000154 ... O59487 39146930
    905243 8x41:A (2.35) BS03 ZN N/A GO:0000154 ... O59487 39146930
    905244 8x41:A (2.35) BS04 SO3 N/A GO:0000154 ... O59487 39146930
    905245 8x41:A (2.35) BS05 SO3 N/A GO:0000154 ... O59487 39146930
    905246 8x41:B (2.35) BS01 MTA N/A GO:0000154 ... O59487 39146930
    905247 8x41:B (2.35) BS02 ADN N/A GO:0000154 ... O59487 39146930
    905248 8x41:B (2.35) BS03 ZN N/A GO:0000154 ... O59487 39146930
    905249 8x41:B (2.35) BS04 SO3 N/A GO:0000154 ... O59487 39146930
    905250 8x41:B (2.35) BS05 SO3 N/A GO:0000154 ... O59487 39146930
    905251 8x42:A (2.097) BS01 CO N/A GO:0003868 ... P93836 N/A
    905252 8x42:A (2.097) BS02 YCR N/A GO:0003868 ... P93836 N/A
    905253 8x43:A (3.0) BS01 7Q0 ? GO:0005216 ... O43526 38167918
    905254 8x43:A (3.0) BS02 7Q0 ? GO:0005216 ... O43526 38167918
    905255 8x43:C (3.0) BS01 7Q0 ? GO:0005216 ... O43526 38167918
    905256 8x43:C (3.0) BS02 7Q0 ? GO:0005216 ... O43526 38167918
    905257 8x43:E (3.0) BS01 7Q0 ? GO:0005216 ... O43526 38167918
    905258 8x43:E (3.0) BS02 7Q0 ? GO:0005216 ... O43526 38167918
    905259 8x43:G (3.0) BS01 7Q0 ? GO:0005216 ... O43526 38167918
    905260 8x43:G (3.0) BS02 7Q0 ? GO:0005216 ... O43526 38167918
    905261 8x44:A (2.6) BS01 MTA N/A GO:0000154 ... O59487 39146930
    905262 8x44:A (2.6) BS02 ZN N/A GO:0000154 ... O59487 39146930
    905263 8x44:B (2.6) BS01 MTA N/A GO:0000154 ... O59487 39146930
    905264 8x44:B (2.6) BS02 ZN N/A GO:0000154 ... O59487 39146930
    905265 8x44:B (2.6) BS03 SO3 N/A GO:0000154 ... O59487 39146930
    905266 8x45:A (2.5) BS01 MTA N/A GO:0000154 ... O59487 39146930
    905267 8x45:A (2.5) BS02 SO3 N/A GO:0000154 ... O59487 39146930
    905268 8x45:B (2.5) BS01 MTA N/A GO:0000154 ... O59487 39146930
    905269 8x45:B (2.5) BS02 SO3 N/A GO:0000154 ... O59487 39146930
    905270 8x46:A (2.2) BS01 SFG N/A GO:0000154 ... O59487 39146930
    905271 8x46:A (2.2) BS02 ZN N/A GO:0000154 ... O59487 39146930
    905272 8x46:A (2.2) BS03 ARG N/A GO:0000154 ... O59487 39146930
    905273 8x46:B (2.2) BS01 SFG N/A GO:0000154 ... O59487 39146930
    905274 8x46:B (2.2) BS02 SO3 N/A GO:0000154 ... O59487 39146930
    905275 8x46:B (2.2) BS03 ARG N/A GO:0000154 ... O59487 39146930
    905276 8x47:A (2.8) BS01 SAH N/A GO:0000154 ... O59487 39146930
    905277 8x47:A (2.8) BS02 SO3 N/A GO:0000154 ... O59487 39146930
    905278 8x47:A (2.8) BS03 ARG N/A GO:0000154 ... O59487 39146930
    905279 8x4i:A (3.3) BS01 MTA N/A GO:0000154 ... O59487 39146930
    905280 8x4k:A (1.9) BS01 UDP N/A N/A Q5ZU30 N/A
    905281 8x4k:A (1.9) BS02 MG N/A N/A Q5ZU30 N/A
    905282 8x4k:A (1.9) BS03 BGC N/A N/A Q5ZU30 N/A
    905283 8x4l:A (2.6) BS01 ZN N/A GO:0000154 ... O59487 39146930
    905284 8x4l:A (2.6) BS02 SO3 N/A GO:0000154 ... O59487 39146930
    905285 8x4l:A (2.6) BS03 SO3 N/A GO:0000154 ... O59487 39146930
    905286 8x4l:A (2.6) BS04 ARG N/A GO:0000154 ... O59487 39146930
    905287 8x4l:B (2.6) BS01 SO3 N/A GO:0000154 ... O59487 39146930
    905288 8x4l:B (2.6) BS02 ZN N/A GO:0000154 ... O59487 39146930
    905289 8x4l:B (2.6) BS03 SO3 N/A GO:0000154 ... O59487 39146930
    905290 8x4l:B (2.6) BS04 ARG N/A GO:0000154 ... O59487 39146930
    905291 8x4m:A (1.79) BS01 UDP N/A N/A Q5ZU30 N/A
    905292 8x4m:A (1.79) BS02 MG N/A N/A Q5ZU30 N/A
    905293 8x4n:B (2.46) BS01 ITP N/A N/A Q5ZU30 N/A
    905294 8x4o:A (3.0) BS01 MTA N/A GO:0000154 ... O59487 39146930
    905295 8x4o:B (3.0) BS01 MTA N/A GO:0000154 ... O59487 39146930
    905296 8x4p:A (2.6) BS01 SFG N/A GO:0000154 ... O59487 39146930
    905297 8x4p:B (2.6) BS01 SFG N/A GO:0000154 ... O59487 39146930
    905298 8x4r:A (2.18) BS01 PHE N/A GO:0003723 ... P14618 N/A
    905299 8x4r:B (2.18) BS01 PHE N/A GO:0003723 ... P14618 N/A
    905300 8x4r:D (2.18) BS01 PHE N/A GO:0003723 ... P14618 N/A
    905301 8x4s:A (2.7) BS01 A1LWG N/A GO:0004609 ... P0DPA6 N/A
    905302 8x4s:C (2.7) BS01 A1LWG N/A GO:0004609 ... P0DPA6 N/A
    905303 8x4s:E (2.7) BS01 A1LWG N/A GO:0004609 ... P0DPA6 N/A
    905304 8x4s:G (2.7) BS01 A1LWG N/A GO:0004609 ... P0DPA6 N/A
    905305 8x4s:I (2.7) BS01 A1LWG N/A GO:0004609 ... P0DPA6 N/A
    905306 8x4s:K (2.7) BS01 A1LWG N/A GO:0004609 ... P0DPA6 N/A
    905307 8x51:A (2.92) BS01 dna 3.1.-.- GO:0004519 ... J8H9C1 38471529
    905308 8x51:A (2.92) BS02 dna 3.1.-.- GO:0004519 ... J8H9C1 38471529
    905309 8x51:A (2.92) BS03 CA 3.1.-.- GO:0004519 ... J8H9C1 38471529
    905310 8x51:B (2.92) BS01 dna 3.1.-.- GO:0004519 ... J8H9C1 38471529
    905311 8x51:B (2.92) BS02 dna 3.1.-.- GO:0004519 ... J8H9C1 38471529
    905312 8x51:B (2.92) BS03 CA 3.1.-.- GO:0004519 ... J8H9C1 38471529
    905313 8x52:B (2.9) BS01 peptide 3.4.23.- GO:0000045 ... P49768 38843321
    905314 8x52:C (2.9) BS01 CLR ? GO:0000139 ... Q96BI3 38843321
    905315 8x53:B (3.0) BS01 peptide 3.4.23.- GO:0000045 ... P49768 38843321
    905316 8x53:C (3.0) BS01 CLR ? GO:0000139 ... Q96BI3 38843321
    905317 8x53:C (3.0) BS02 CLR ? GO:0000139 ... Q96BI3 38843321
    905318 8x54:B (2.9) BS01 peptide 3.4.23.- GO:0000045 ... P49768 38843321
    905319 8x54:C (2.9) BS01 CLR ? GO:0000139 ... Q96BI3 38843321
    905320 8x54:C (2.9) BS02 CLR ? GO:0000139 ... Q96BI3 38843321
    905321 8x54:C (2.9) BS03 CLR ? GO:0000139 ... Q96BI3 38843321
    905322 8x5b:A (2.84) BS01 PO4 N/A GO:0016020 ... Q9UBH6 39169184
    905323 8x5b:A (2.84) BS02 PO4 N/A GO:0016020 ... Q9UBH6 39169184
    905324 8x5b:A (2.84) BS03 PO4 N/A GO:0016020 ... Q9UBH6 39169184
    905325 8x5b:A (2.84) BS04 PO4 N/A GO:0016020 ... Q9UBH6 39169184
    905326 8x5b:F (2.84) BS01 PO4 N/A GO:0016020 ... Q9UBH6 39169184
    905327 8x5b:F (2.84) BS02 PO4 N/A GO:0016020 ... Q9UBH6 39169184
    905328 8x5b:F (2.84) BS03 PO4 N/A GO:0016020 ... Q9UBH6 39169184
    905329 8x5b:F (2.84) BS04 PO4 N/A GO:0016020 ... Q9UBH6 39169184
    905330 8x5c:A (1.788) BS01 CO N/A GO:0003868 ... P93836 N/A
    905331 8x5c:A (1.788) BS02 YCZ N/A GO:0003868 ... P93836 N/A
    905332 8x5d:G (3.1) BS01 rna 3.1.-.- GO:0003723 ... P9WJF9 38218299
    905333 8x5d:H (3.1) BS01 rna 3.1.-.- GO:0003723 ... P9WJF9 38218299
    905334 8x5d:I (3.1) BS01 rna 3.1.-.- GO:0003723 ... P9WJF9 38218299
    905335 8x5d:J (3.1) BS01 rna 3.1.-.- GO:0003723 ... P9WJF9 38218299
    905336 8x5d:K (3.1) BS01 rna 3.1.-.- GO:0003723 ... P9WJF9 38218299
    905337 8x5d:L (3.1) BS01 rna 3.1.-.- GO:0003723 ... P9WJF9 38218299
    905338 8x5d:N (3.1) BS01 rna ? GO:0003723 ... P9WJF5 38218299
    905339 8x5f:A (2.96) BS01 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    905340 8x5f:A (2.96) BS02 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    905341 8x5f:A (2.96) BS03 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    905342 8x5f:A (2.96) BS04 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    905343 8x5f:A (2.96) BS05 IHP N/A GO:0000822 ... Q9UBH6 39169184
    905344 8x5f:B (2.96) BS01 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    905345 8x5f:B (2.96) BS02 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    905346 8x5f:B (2.96) BS03 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    905347 8x5f:B (2.96) BS04 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    905348 8x5f:B (2.96) BS05 IHP N/A GO:0000822 ... Q9UBH6 39169184
    905349 8x5i:A (3.01) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    905350 8x5i:A (3.01) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    905351 8x5i:B (3.01) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    905352 8x5i:B (3.01) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    905353 8x5i:C (3.01) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    905354 8x5i:D (3.01) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    905355 8x5i:D (3.01) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    905356 8x5j:A (1.7) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... O95271 N/A
    905357 8x5j:B (1.7) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... O95271 N/A
    905358 8x5k:A (1.8) BS01 3YT 2.7.10.2 GO:0004672 ... P43405 N/A
    905359 8x5l:A (2.75) BS01 RKD 2.7.11.11 GO:0000287 ... P17612 N/A
    905360 8x5l:B (2.75) BS01 RKD 2.7.11.11 GO:0000287 ... P17612 N/A
    905361 8x5m:A (2.0) BS01 Y4O 2.7.11.24 GO:0004672 ... P45983 N/A
    905362 8x5n:A (2.8) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    905363 8x5n:A (2.8) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    905364 8x5n:B (2.8) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    905365 8x5n:C (2.8) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    905366 8x5n:D (2.8) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    905367 8x5n:D (2.8) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    905368 8x5s:A (1.726) BS01 S3P N/A GO:0000287 ... P9WPY3 N/A
    905369 8x5t:A (1.6) BS01 AMP N/A GO:0000049 ... Q5SHZ2 N/A
    905370 8x5t:B (1.6) BS01 AMP N/A GO:0000049 ... Q5SHZ2 N/A
    905371 8x5v:A (2.0) BS01 rna N/A GO:0003676 ... N/A 38961195
    905372 8x5v:A (2.0) BS02 dna N/A GO:0003676 ... N/A 38961195
    905373 8x5v:A (2.0) BS03 dna N/A GO:0003676 ... N/A 38961195
    905374 8x5y:B (3.0) BS01 XB7 ? GO:0004930 ... P0ABE7
    P35367
    38167898
    905375 8x61:A (3.05) BS01 ATP ? GO:0000917 ... P0A9R7 38814940
    905376 8x61:A (3.05) BS02 ATP ? GO:0000917 ... P0A9R7 38814940
    905377 8x61:B (3.05) BS01 ATP ? GO:0000917 ... P0A9R7 38814940
    905378 8x61:B (3.05) BS02 ATP ? GO:0000917 ... P0A9R7 38814940
    905379 8x63:B (3.2) BS01 Y5E ? GO:0004930 ... P0ABE7
    P35367
    38167898
    905380 8x64:B (3.4) BS01 Y5R ? GO:0004930 ... P0ABE7
    P35367
    38167898
    905381 8x68:A (1.895) BS01 CO N/A GO:0003868 ... P93836 N/A
    905382 8x68:A (1.895) BS02 YD2 N/A GO:0003868 ... P93836 N/A
    905383 8x69:A (1.796) BS01 CO N/A GO:0003868 ... P93836 N/A
    905384 8x69:A (1.796) BS02 YDF N/A GO:0003868 ... P93836 N/A
    905385 8x6a:A (1.48) BS01 CO N/A GO:0003868 ... P93836 N/A
    905386 8x6a:A (1.48) BS02 YFC N/A GO:0003868 ... P93836 N/A
    905387 8x6c:A (1.796) BS01 CO N/A GO:0003868 ... P93836 N/A
    905388 8x6c:A (1.796) BS02 YFM N/A GO:0003868 ... P93836 N/A
    905389 8x6d:B (2.0) BS01 dna N/A N/A Q02457 N/A
    905390 8x6d:B (2.0) BS02 dna N/A N/A Q02457 N/A
    905391 8x6d:E (2.0) BS01 dna N/A N/A Q02457 N/A
    905392 8x6d:E (2.0) BS02 dna N/A N/A Q02457 N/A
    905393 8x6d:F (2.0) BS01 dna N/A N/A Q02457 N/A
    905394 8x6d:F (2.0) BS02 dna N/A N/A Q02457 N/A
    905395 8x6f:C (3.7) BS01 dna 2.7.7.6 GO:0000428 ... P47768 38844782
    905396 8x6f:D (3.7) BS01 dna 2.7.7.6 GO:0000287 ... Q2G0N5 38844782
    905397 8x6f:D (3.7) BS02 dna 2.7.7.6 GO:0000287 ... Q2G0N5 38844782
    905398 8x6f:E (3.7) BS01 dna ? GO:0003677 ... P0A0J0 38844782
    905399 8x6f:E (3.7) BS02 dna ? GO:0003677 ... P0A0J0 38844782
    905400 8x6g:D (3.3) BS01 dna 2.7.7.6 GO:0000287 ... Q2G0N5 38844782

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).