SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    905201 8vvv:DD (3.1) BS02 MG N/A GO:0003723 ... G1TNM3 N/A
    905202 8vvv:E (3.1) BS01 rna N/A GO:0000027 ... G1SKF7 N/A
    905203 8vvv:EE (3.1) BS01 rna N/A GO:0003723 ... G1TA47 N/A
    905204 8vvv:F (3.1) BS01 rna N/A GO:0000463 ... G1SV32 N/A
    905205 8vvv:F (3.1) BS02 rna N/A GO:0000463 ... G1SV32 N/A
    905206 8vvv:FF (3.1) BS01 rna N/A GO:0003723 ... G1TFM5 N/A
    905207 8vvv:G (3.1) BS01 rna N/A GO:0003723 ... G1STW0 N/A
    905208 8vvv:G (3.1) BS02 rna N/A GO:0003723 ... G1STW0 N/A
    905209 8vvv:GG (3.1) BS01 rna N/A GO:0003735 ... G1TM55 N/A
    905210 8vvv:H (3.1) BS01 rna N/A GO:0002181 ... G1SWI6 N/A
    905211 8vvv:HH (3.1) BS01 rna N/A GO:0003735 ... G1SVB0 N/A
    905212 8vvv:I (3.1) BS01 rna N/A GO:0003735 ... B7NZQ2 N/A
    905213 8vvv:I (3.1) BS02 rna N/A GO:0003735 ... B7NZQ2 N/A
    905214 8vvv:II (3.1) BS01 rna N/A GO:0003735 ... G1TJW1 N/A
    905215 8vvv:II (3.1) BS02 rna N/A GO:0003735 ... G1TJW1 N/A
    905216 8vvv:J (3.1) BS01 rna N/A GO:0003735 ... G1TUB8 N/A
    905217 8vvv:J (3.1) BS02 rna N/A GO:0003735 ... G1TUB8 N/A
    905218 8vvv:JJ (3.1) BS01 rna N/A GO:0003723 ... B7NZS8 N/A
    905219 8vvv:KK (3.1) BS01 peptide N/A N/A G1TPV3 N/A
    905220 8vvv:KK (3.1) BS02 rna N/A N/A G1TPV3 N/A
    905221 8vvv:L (3.1) BS01 rna N/A GO:0003735 ... N/A N/A
    905222 8vvv:L (3.1) BS02 rna N/A GO:0003735 ... N/A N/A
    905223 8vvv:LL (3.1) BS01 rna N/A GO:0003735 ... G1TRM4 N/A
    905224 8vvv:M (3.1) BS01 rna N/A GO:0003723 ... G1SZ12 N/A
    905225 8vvv:MM (3.1) BS01 peptide N/A GO:0003735 ... G1SFR8 N/A
    905226 8vvv:MM (3.1) BS02 rna N/A GO:0003735 ... G1SFR8 N/A
    905227 8vvv:N (3.1) BS01 rna N/A GO:0002181 ... G1T0C1 N/A
    905228 8vvv:N (3.1) BS02 rna N/A GO:0002181 ... G1T0C1 N/A
    905229 8vvv:NN (3.1) BS01 rna N/A GO:0003735 ... G1SP51 N/A
    905230 8vvv:O (3.1) BS01 rna N/A GO:0003735 ... N/A N/A
    905231 8vvv:OO (3.1) BS01 rna N/A GO:0003735 ... G1T1F0 N/A
    905232 8vvv:P (3.1) BS01 rna N/A GO:0002181 ... G1SCJ6 N/A
    905233 8vvv:P (3.1) BS02 rna N/A GO:0002181 ... G1SCJ6 N/A
    905234 8vvv:PP (3.1) BS01 rna N/A GO:0003723 ... G1U0Q2 N/A
    905235 8vvv:Q (3.1) BS01 rna N/A GO:0003723 ... G1TFE0 N/A
    905236 8vvv:QQ (3.1) BS01 rna N/A GO:0000462 ... G1SGX4 N/A
    905237 8vvv:R (3.1) BS01 rna N/A GO:0003723 ... N/A N/A
    905238 8vvv:R (3.1) BS02 rna N/A GO:0003723 ... N/A N/A
    905239 8vvv:RR (3.1) BS01 rna N/A GO:0003735 ... G1TU13 N/A
    905240 8vvv:S (3.1) BS01 rna N/A GO:0003735 ... N/A N/A
    905241 8vvv:S (3.1) BS02 rna N/A GO:0003735 ... N/A N/A
    905242 8vvv:SS (3.1) BS01 rna N/A GO:0003676 ... G1TPG3 N/A
    905243 8vvv:T (3.1) BS01 rna N/A GO:0003735 ... G1SHQ2 N/A
    905244 8vvv:T (3.1) BS02 rna N/A GO:0003735 ... G1SHQ2 N/A
    905245 8vvv:TT (3.1) BS01 rna N/A GO:0000028 ... G1TN62 N/A
    905246 8vvv:TT (3.1) BS02 MG N/A GO:0000028 ... G1TN62 N/A
    905247 8vvv:U (3.1) BS01 rna N/A GO:0002181 ... G1TSG1 N/A
    905248 8vvv:UU (3.1) BS01 rna N/A GO:0003723 ... G1SIZ2 N/A
    905249 8vvv:V (3.1) BS01 rna N/A GO:0000122 ... G1T6D1 N/A
    905250 8vvv:W (3.1) BS01 rna N/A GO:0002181 ... G1SE28 N/A
    905251 8vvv:WW (3.1) BS01 rna N/A GO:0003735 ... G1TG89 N/A
    905252 8vvv:X (3.1) BS01 rna N/A GO:0003735 ... G1SE76 N/A
    905253 8vvv:X (3.1) BS02 rna N/A GO:0003735 ... G1SE76 N/A
    905254 8vvv:XX (3.1) BS01 rna N/A GO:0003735 ... G1SZ47 N/A
    905255 8vvv:Y (3.1) BS01 rna N/A GO:0003723 ... G1SQH0 N/A
    905256 8vvv:Y (3.1) BS02 rna N/A GO:0003723 ... G1SQH0 N/A
    905257 8vvv:YY (3.1) BS01 rna N/A GO:0003735 ... G1T3D8 N/A
    905258 8vvv:Z (3.1) BS01 rna N/A GO:0002181 ... G1TXF6 N/A
    905259 8vvv:ZZ (3.1) BS01 rna N/A N/A G1TDB3 N/A
    905260 8vvv:a (3.1) BS01 rna N/A GO:0003735 ... G1SNY0 N/A
    905261 8vvv:aa (3.1) BS01 rna N/A GO:0003735 ... G1TFE8 N/A
    905262 8vvv:aa (3.1) BS02 ZN N/A GO:0003735 ... G1TFE8 N/A
    905263 8vvv:b (3.1) BS01 rna N/A GO:0002181 ... G1SGR6 N/A
    905264 8vvv:bb (3.1) BS01 rna N/A GO:0003735 ... G1TZ76 N/A
    905265 8vvv:c (3.1) BS01 rna N/A GO:0003723 ... G1TDL2 N/A
    905266 8vvv:cc (3.1) BS01 rna N/A GO:0000028 ... G1TIB4 N/A
    905267 8vvv:d (3.1) BS01 rna N/A GO:0003735 ... G1SHG0 N/A
    905268 8vvv:dd (3.1) BS01 rna N/A GO:0002181 ... G1U7M4 N/A
    905269 8vvv:dd (3.1) BS02 MG N/A GO:0002181 ... G1U7M4 N/A
    905270 8vvv:dd (3.1) BS03 ZN N/A GO:0002181 ... G1U7M4 N/A
    905271 8vvv:e (3.1) BS01 rna N/A GO:0003735 ... G1TUN8 N/A
    905272 8vvv:ee (3.1) BS01 rna N/A GO:0003735 ... G1T8A2 N/A
    905273 8vvv:f (3.1) BS01 rna N/A GO:0003735 ... G1SF08 N/A
    905274 8vvv:ff (3.1) BS01 rna N/A GO:0003735 ... G1SK22 N/A
    905275 8vvv:ff (3.1) BS02 ZN N/A GO:0003735 ... G1SK22 N/A
    905276 8vvv:g (3.1) BS01 rna N/A GO:0003735 ... G1TXG5 N/A
    905277 8vvv:g (3.1) BS02 ZN N/A GO:0003735 ... G1TXG5 N/A
    905278 8vvv:g (3.1) BS03 MG N/A GO:0003735 ... G1TXG5 N/A
    905279 8vvv:gg (3.1) BS01 rna N/A GO:0001891 ... G1SJB4 N/A
    905280 8vvv:h (3.1) BS01 rna N/A GO:0000463 ... G1SIT5 N/A
    905281 8vvv:h (3.1) BS02 rna N/A GO:0000463 ... G1SIT5 N/A
    905282 8vvv:i (3.1) BS01 rna N/A GO:0003735 ... G1TTQ5 N/A
    905283 8vvv:j (3.1) BS01 rna N/A GO:0003735 ... U3KPD5 N/A
    905284 8vvv:j (3.1) BS02 rna N/A GO:0003735 ... U3KPD5 N/A
    905285 8vvv:j (3.1) BS03 ZN N/A GO:0003735 ... U3KPD5 N/A
    905286 8vvv:k (3.1) BS01 rna N/A GO:0003735 ... N/A N/A
    905287 8vvv:l (3.1) BS01 rna N/A GO:0003735 ... G1TTN1 N/A
    905288 8vvv:l (3.1) BS02 rna N/A GO:0003735 ... G1TTN1 N/A
    905289 8vvv:m (3.1) BS01 rna N/A GO:0003735 ... N/A N/A
    905290 8vvv:m (3.1) BS02 ZN N/A GO:0003735 ... N/A N/A
    905291 8vvv:o (3.1) BS01 rna N/A GO:0003735 ... G1T040 N/A
    905292 8vvv:o (3.1) BS02 ZN N/A GO:0003735 ... G1T040 N/A
    905293 8vvv:p (3.1) BS01 rna N/A GO:0003735 ... G1SY53 N/A
    905294 8vvv:p (3.1) BS02 ZN N/A GO:0003735 ... G1SY53 N/A
    905295 8vvv:r (3.1) BS01 rna N/A GO:0003735 ... G1U7L1 N/A
    905296 8vvv:s (3.1) BS01 rna N/A N/A G1SPK4 N/A
    905297 8vvv:t (3.1) BS01 rna N/A GO:0003735 ... G1SMR7 N/A
    905298 8vvv:v (3.1) BS01 rna N/A GO:0003924 ... N/A N/A
    905299 8vvv:v (3.1) BS02 peptide N/A GO:0003924 ... N/A N/A
    905300 8vvv:v (3.1) BS03 rna N/A GO:0003924 ... N/A N/A
    905301 8vvv:v (3.1) BS04 GDP N/A GO:0003924 ... N/A N/A
    905302 8vw0:A (1.7) BS01 AMP 6.3.2.9 GO:0005515 ... P14900 N/A
    905303 8vw0:A (1.7) BS02 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    905304 8vw0:A (1.7) BS03 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    905305 8vw0:A (1.7) BS04 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    905306 8vw0:A (1.7) BS05 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    905307 8vw1:A (1.7) BS01 ADP 6.3.2.9 GO:0005515 ... P14900 N/A
    905308 8vw1:A (1.7) BS02 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    905309 8vw1:A (1.7) BS03 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    905310 8vw1:A (1.7) BS04 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    905311 8vw2:A (1.95) BS01 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    905312 8vw2:A (1.95) BS02 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    905313 8vw2:A (1.95) BS03 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    905314 8vw2:A (1.95) BS04 ATP 6.3.2.9 GO:0005515 ... P14900 N/A
    905315 8vw2:A (1.95) BS05 MG 6.3.2.9 GO:0005515 ... P14900 N/A
    905316 8vw4:A (2.4) BS01 MG N/A GO:0001784 ... Q13191 38894924
    905317 8vw4:A (2.4) BS02 A1AEG N/A GO:0001784 ... Q13191 38894924
    905318 8vw4:A (2.4) BS03 A1AEG N/A GO:0001784 ... Q13191 38894924
    905319 8vw4:B (2.4) BS01 A1AEG N/A GO:0001784 ... Q13191 38894924
    905320 8vw4:B (2.4) BS02 MG N/A GO:0001784 ... Q13191 38894924
    905321 8vw4:B (2.4) BS03 A1AEG N/A GO:0001784 ... Q13191 38894924
    905322 8vw5:A (1.76) BS01 MG N/A GO:0001784 ... Q13191 38894924
    905323 8vw5:A (1.76) BS02 CA N/A GO:0001784 ... Q13191 38894924
    905324 8vw5:A (1.76) BS03 A1AD4 N/A GO:0001784 ... Q13191 38894924
    905325 8vw5:B (1.76) BS01 MG N/A GO:0001784 ... Q13191 38894924
    905326 8vw5:B (1.76) BS02 A1AD4 N/A GO:0001784 ... Q13191 38894924
    905327 8vw5:B (1.76) BS03 CA N/A GO:0001784 ... Q13191 38894924
    905328 8vw9:A (2.6) BS01 ZN N/A GO:0004176 ... Q5SI82 39806067
    905329 8vw9:A (2.6) BS02 ATP N/A GO:0004176 ... Q5SI82 39806067
    905330 8vwa:A (2.5) BS01 ZN N/A GO:0004176 ... Q5SI82 39806067
    905331 8vwa:A (2.5) BS02 ATP N/A GO:0004176 ... Q5SI82 39806067
    905332 8vwb:A (2.7) BS01 ZN N/A GO:0004176 ... Q5SI82 39806067
    905333 8vwb:A (2.7) BS02 ATP N/A GO:0004176 ... Q5SI82 39806067
    905334 8vwc:A (2.6) BS01 ZN N/A GO:0004176 ... Q5SI82 39806067
    905335 8vwc:A (2.6) BS02 ATP N/A GO:0004176 ... Q5SI82 39806067
    905336 8vwh:A (3.06) BS01 ZN N/A GO:0005198 ... P17499 39693434
    905337 8vwh:C (3.06) BS01 ZN N/A GO:0005198 ... P17499 39693434
    905338 8vwh:E (3.06) BS01 ZN N/A GO:0005198 ... P17499 39693434
    905339 8vwh:G (3.06) BS01 ZN N/A GO:0005198 ... P17499 39693434
    905340 8vwh:I (3.06) BS01 ZN N/A GO:0005198 ... P17499 39693434
    905341 8vwh:K (3.06) BS01 ZN N/A GO:0005198 ... P17499 39693434
    905342 8vwh:M (3.06) BS01 ZN N/A GO:0005198 ... P17499 39693434
    905343 8vwi:B (4.71) BS01 ZN N/A GO:0005198 ... P17499 N/A
    905344 8vwi:C (4.71) BS01 ZN N/A GO:0005198 ... P17499 N/A
    905345 8vwi:D (4.71) BS01 ZN N/A GO:0005198 ... P17499 N/A
    905346 8vwi:E (4.71) BS01 ZN N/A GO:0005198 ... P17499 N/A
    905347 8vwi:F (4.71) BS01 ZN N/A GO:0005198 ... P17499 N/A
    905348 8vwi:W (4.71) BS01 ZN N/A GO:0005198 ... P17499 N/A
    905349 8vwi:X (4.71) BS01 ZN N/A GO:0005198 ... P17499 N/A
    905350 8vwi:Y (4.71) BS01 ZN N/A GO:0005198 ... P17499 N/A
    905351 8vwi:Z (4.71) BS01 ZN N/A GO:0005198 ... P17499 N/A
    905352 8vwi:a (4.71) BS01 ZN N/A GO:0005198 ... P17499 N/A
    905353 8vwj:A (4.78) BS01 ZN N/A GO:0005198 ... P17499 39693434
    905354 8vwj:B (4.78) BS01 ZN N/A GO:0005198 ... P17499 39693434
    905355 8vwj:C (4.78) BS01 ZN N/A GO:0005198 ... P17499 39693434
    905356 8vwj:D (4.78) BS01 ZN N/A GO:0005198 ... P17499 39693434
    905357 8vwj:E (4.78) BS01 ZN N/A GO:0005198 ... P17499 39693434
    905358 8vwj:F (4.78) BS01 ZN N/A GO:0005198 ... P17499 39693434
    905359 8vwj:V (4.78) BS01 ZN N/A GO:0005198 ... P17499 39693434
    905360 8vwj:W (4.78) BS01 ZN N/A GO:0005198 ... P17499 39693434
    905361 8vwj:X (4.78) BS01 ZN N/A GO:0005198 ... P17499 39693434
    905362 8vwj:Y (4.78) BS01 ZN N/A GO:0005198 ... P17499 39693434
    905363 8vwj:Z (4.78) BS01 ZN N/A GO:0005198 ... P17499 39693434
    905364 8vwj:a (4.78) BS01 ZN N/A GO:0005198 ... P17499 39693434
    905365 8vwk:A (2.05) BS01 HEM N/A GO:0004497 ... A0A0B0D9P4 39843428
    905366 8vwm:A (1.94) BS01 WHE N/A GO:0000077 ... P47811 N/A
    905367 8vwn:A (4.25) BS01 GDP N/A GO:0005525 ... A0A655NVH2 39128725
    905368 8vwn:B (4.25) BS01 GDP N/A GO:0005525 ... A0A655NVH2 39128725
    905369 8vwn:C (4.25) BS01 GDP N/A GO:0005525 ... A0A655NVH2 39128725
    905370 8vwn:D (4.25) BS01 GDP N/A GO:0005525 ... A0A655NVH2 39128725
    905371 8vwo:A (1.85) BS01 peptide N/A GO:0005634 ... Q16186 40595513
    905372 8vwq:6 (3.1) BS01 rna N/A GO:0003746 ... C3SGD7 N/A
    905373 8vwq:6 (3.1) BS02 rna N/A GO:0003746 ... C3SGD7 N/A
    905374 8vwq:6 (3.1) BS03 rna N/A GO:0003746 ... C3SGD7 N/A
    905375 8vwq:A (3.1) BS01 rna N/A GO:0003723 ... C3SIC2 N/A
    905376 8vwq:B (3.1) BS01 rna N/A GO:0000027 ... P60422 N/A
    905377 8vwq:C (3.1) BS01 rna N/A GO:0000027 ... P60438 N/A
    905378 8vwq:D (3.1) BS01 rna N/A GO:0003735 ... A1AGK6 N/A
    905379 8vwq:E (3.1) BS01 rna N/A GO:0003735 ... N/A N/A
    905380 8vwq:E (3.1) BS02 rna N/A GO:0003735 ... N/A N/A
    905381 8vwq:E (3.1) BS03 rna N/A GO:0003735 ... N/A N/A
    905382 8vwq:F (3.1) BS01 rna N/A GO:0002181 ... C3SR17 N/A
    905383 8vwq:G (3.1) BS01 rna N/A GO:0003735 ... C3SFP2 N/A
    905384 8vwq:J (3.1) BS01 rna N/A GO:0003735 ... N/A N/A
    905385 8vwq:K (3.1) BS01 rna N/A GO:0003735 ... S1NW45 N/A
    905386 8vwq:K (3.1) BS02 rna N/A GO:0003735 ... S1NW45 N/A
    905387 8vwq:L (3.1) BS01 rna N/A GO:0003735 ... A0A037Y8L6 N/A
    905388 8vwq:M (3.1) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    905389 8vwq:M (3.1) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    905390 8vwq:N (3.1) BS01 rna N/A GO:0003735 ... C3SR72 N/A
    905391 8vwq:O (3.1) BS01 rna N/A GO:0003735 ... N/A N/A
    905392 8vwq:O (3.1) BS02 rna N/A GO:0003735 ... N/A N/A
    905393 8vwq:P (3.1) BS01 rna N/A GO:0003735 ... N/A N/A
    905394 8vwq:P (3.1) BS02 rna N/A GO:0003735 ... N/A N/A
    905395 8vwq:Q (3.1) BS01 rna N/A GO:0000027 ... B7MAS6 N/A
    905396 8vwq:R (3.1) BS01 rna N/A GO:0003723 ... C3SSG2 N/A
    905397 8vwq:S (3.1) BS01 rna N/A GO:0002181 ... P61175 N/A
    905398 8vwq:T (3.1) BS01 rna N/A GO:0003735 ... N/A N/A
    905399 8vwq:U (3.1) BS01 rna N/A GO:0003723 ... N/A N/A
    905400 8vwq:V (3.1) BS01 rna N/A GO:0003735 ... N/A N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).