SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    905401 8x6g:H (3.3) BS01 dna ? GO:0003677 ... A0A390QYZ6 38844782
    905402 8x6g:H (3.3) BS02 dna ? GO:0003677 ... A0A390QYZ6 38844782
    905403 8x6j:A (1.99) BS01 SAM N/A N/A Q9HJN6 N/A
    905404 8x6m:A (2.0) BS01 ZN 1.1.1.6
    1.1.1.75
    GO:0005829 ... P0A9S5 38483875
    905405 8x6m:A (2.0) BS02 NAD 1.1.1.6
    1.1.1.75
    GO:0005829 ... P0A9S5 38483875
    905406 8x6m:A (2.0) BS03 GOL 1.1.1.6
    1.1.1.75
    GO:0005829 ... P0A9S5 38483875
    905407 8x6m:A (2.0) BS04 GOL 1.1.1.6
    1.1.1.75
    GO:0005829 ... P0A9S5 38483875
    905408 8x6m:B (2.0) BS01 ZN 1.1.1.6
    1.1.1.75
    GO:0005829 ... P0A9S5 38483875
    905409 8x6m:B (2.0) BS02 NAD 1.1.1.6
    1.1.1.75
    GO:0005829 ... P0A9S5 38483875
    905410 8x6q:A (2.39) BS01 Y8R N/A GO:0016491 ... Q8H620 39133859
    905411 8x6q:A (2.39) BS02 CO N/A GO:0016491 ... Q8H620 39133859
    905412 8x6q:A (2.39) BS03 AKG N/A GO:0016491 ... Q8H620 39133859
    905413 8x6q:B (2.39) BS01 Y8R N/A GO:0016491 ... Q8H620 39133859
    905414 8x6q:B (2.39) BS02 CO N/A GO:0016491 ... Q8H620 39133859
    905415 8x6q:B (2.39) BS03 AKG N/A GO:0016491 ... Q8H620 39133859
    905416 8x6q:C (2.39) BS01 Y8R N/A GO:0016491 ... Q8H620 39133859
    905417 8x6q:C (2.39) BS02 CO N/A GO:0016491 ... Q8H620 39133859
    905418 8x6q:C (2.39) BS03 AKG N/A GO:0016491 ... Q8H620 39133859
    905419 8x6q:D (2.39) BS01 Y8R N/A GO:0016491 ... Q8H620 39133859
    905420 8x6q:D (2.39) BS02 CO N/A GO:0016491 ... Q8H620 39133859
    905421 8x6q:D (2.39) BS03 AKG N/A GO:0016491 ... Q8H620 39133859
    905422 8x6r:A (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    905423 8x6r:A (1.85) BS02 Y9D 3.6.5.2 GO:0003924 ... P01116 38176113
    905424 8x6r:B (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    905425 8x6r:B (1.85) BS02 Y9D 3.6.5.2 GO:0003924 ... P01116 38176113
    905426 8x6r:C (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    905427 8x6r:C (1.85) BS02 Y9D 3.6.5.2 GO:0003924 ... P01116 38176113
    905428 8x6r:D (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    905429 8x6r:D (1.85) BS02 Y9D 3.6.5.2 GO:0003924 ... P01116 38176113
    905430 8x6r:E (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    905431 8x6r:E (1.85) BS02 Y9D 3.6.5.2 GO:0003924 ... P01116 38176113
    905432 8x6r:F (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    905433 8x6r:F (1.85) BS02 Y9D 3.6.5.2 GO:0003924 ... P01116 38176113
    905434 8x6u:A (1.75) BS01 ZN N/A N/A A0A4Y3JPW3 N/A
    905435 8x6u:A (1.75) BS02 Y7U N/A N/A A0A4Y3JPW3 N/A
    905436 8x6u:B (1.75) BS01 ZN N/A N/A A0A4Y3JPW3 N/A
    905437 8x6u:B (1.75) BS02 Y7U N/A N/A A0A4Y3JPW3 N/A
    905438 8x6w:A (1.75) BS01 ZN N/A N/A A0A4Y3JPW3 N/A
    905439 8x6w:B (1.75) BS01 ZN N/A N/A A0A4Y3JPW3 N/A
    905440 8x6x:A (2.92) BS01 Y86 N/A GO:0005886 ... P9WJY5 N/A
    905441 8x6x:A (2.92) BS02 Y8F N/A GO:0005886 ... P9WJY5 N/A
    905442 8x6x:B (2.92) BS01 Y8F N/A GO:0005886 ... P9WJY5 N/A
    905443 8x6x:B (2.92) BS02 Y86 N/A GO:0005886 ... P9WJY5 N/A
    905444 8x6y:A (1.56) BS01 ZN N/A N/A A0A4Y3JPW3 N/A
    905445 8x6y:B (1.56) BS01 ZN N/A N/A A0A4Y3JPW3 N/A
    905446 8x6z:A (2.95) BS01 MN N/A GO:0003824 ... N/A 39163210
    905447 8x6z:A (2.95) BS02 MN N/A GO:0003824 ... N/A 39163210
    905448 8x6z:B (2.95) BS01 MN N/A GO:0003824 ... N/A 39163210
    905449 8x6z:B (2.95) BS02 MN N/A GO:0003824 ... N/A 39163210
    905450 8x6z:C (2.95) BS01 MN N/A GO:0003824 ... N/A 39163210
    905451 8x6z:D (2.95) BS01 MN N/A GO:0003824 ... N/A 39163210
    905452 8x6z:E (2.95) BS01 MN N/A GO:0003824 ... N/A 39163210
    905453 8x6z:E (2.95) BS02 MN N/A GO:0003824 ... N/A 39163210
    905454 8x6z:F (2.95) BS01 MN N/A GO:0003824 ... N/A 39163210
    905455 8x6z:F (2.95) BS02 MN N/A GO:0003824 ... N/A 39163210
    905456 8x71:B (1.58) BS01 YCC N/A GO:0016209 ... Q06830 N/A
    905457 8x72:A (2.2) BS01 ANP 2.7.11.21 GO:0004672 ... P53350 N/A
    905458 8x72:A (2.2) BS02 ZN 2.7.11.21 GO:0004672 ... P53350 N/A
    905459 8x73:B (1.61) BS01 YC0 N/A GO:0016209 ... Q06830 N/A
    905460 8x74:A (1.791) BS01 CO N/A GO:0046872 ... B6U9L0 39133859
    905461 8x74:A (1.791) BS02 AKG N/A GO:0046872 ... B6U9L0 39133859
    905462 8x74:A (1.791) BS03 92L N/A GO:0046872 ... B6U9L0 39133859
    905463 8x77:B (3.52) BS01 SAH 2.1.1.85 GO:0000785 ... Q86TU7 38755176
    905464 8x77:C (3.52) BS01 ZN ? GO:0006508 ... R9YK28 38755176
    905465 8x77:E (3.52) BS01 ZN ? GO:0006508 ... R9YK28 38755176
    905466 8x77:F (3.52) BS01 ZN ? GO:0006508 ... R9YK28 38755176
    905467 8x77:H (3.52) BS01 ZN ? GO:0006508 ... R9YK28 38755176
    905468 8x79:R (2.41) BS01 Y9Q ? GO:0004930 ... P43119 38335293
    905469 8x7a:R (2.56) BS01 Y9J ? GO:0004930 ... P43119 38335293
    905470 8x7b:A (3.0) BS01 TFX N/A GO:0000122 ... P37840 N/A
    905471 8x7b:C (3.0) BS01 TFX N/A GO:0000122 ... P37840 N/A
    905472 8x7b:C (3.0) BS02 TFX N/A GO:0000122 ... P37840 N/A
    905473 8x7b:C (3.0) BS03 TFX N/A GO:0000122 ... P37840 N/A
    905474 8x7b:C (3.0) BS04 TFX N/A GO:0000122 ... P37840 N/A
    905475 8x7b:D (3.0) BS01 TFX N/A GO:0000122 ... P37840 N/A
    905476 8x7b:E (3.0) BS01 TFX N/A GO:0000122 ... P37840 N/A
    905477 8x7b:E (3.0) BS02 TFX N/A GO:0000122 ... P37840 N/A
    905478 8x7b:E (3.0) BS03 TFX N/A GO:0000122 ... P37840 N/A
    905479 8x7b:E (3.0) BS04 TFX N/A GO:0000122 ... P37840 N/A
    905480 8x7b:F (3.0) BS01 TFX N/A GO:0000122 ... P37840 N/A
    905481 8x7b:F (3.0) BS02 TFX N/A GO:0000122 ... P37840 N/A
    905482 8x7b:G (3.0) BS01 TFX N/A GO:0000122 ... P37840 N/A
    905483 8x7b:G (3.0) BS02 TFX N/A GO:0000122 ... P37840 N/A
    905484 8x7b:G (3.0) BS03 TFX N/A GO:0000122 ... P37840 N/A
    905485 8x7b:G (3.0) BS04 TFX N/A GO:0000122 ... P37840 N/A
    905486 8x7b:I (3.0) BS01 TFX N/A GO:0000122 ... P37840 N/A
    905487 8x7b:J (3.0) BS01 TFX N/A GO:0000122 ... P37840 N/A
    905488 8x7b:J (3.0) BS02 TFX N/A GO:0000122 ... P37840 N/A
    905489 8x7b:J (3.0) BS03 TFX N/A GO:0000122 ... P37840 N/A
    905490 8x7b:J (3.0) BS04 TFX N/A GO:0000122 ... P37840 N/A
    905491 8x7c:A (1.597) BS01 CO N/A GO:0046872 ... B6U9L0 39133859
    905492 8x7c:A (1.597) BS02 AKG N/A GO:0046872 ... B6U9L0 39133859
    905493 8x7c:B (1.597) BS01 CO N/A GO:0046872 ... B6U9L0 39133859
    905494 8x7c:B (1.597) BS02 AKG N/A GO:0046872 ... B6U9L0 39133859
    905495 8x7d:A (2.2) BS01 CO N/A GO:0016491 ... Q8H620 39133859
    905496 8x7d:A (2.2) BS02 AKG N/A GO:0016491 ... Q8H620 39133859
    905497 8x7d:A (2.2) BS03 AKG N/A GO:0016491 ... Q8H620 39133859
    905498 8x7d:B (2.2) BS01 CO N/A GO:0016491 ... Q8H620 39133859
    905499 8x7d:B (2.2) BS02 AKG N/A GO:0016491 ... Q8H620 39133859
    905500 8x7d:B (2.2) BS03 AKG N/A GO:0016491 ... Q8H620 39133859
    905501 8x7e:A (2.3) BS01 peptide N/A N/A P51449 38170624
    905502 8x7e:A (2.3) BS02 YAL N/A N/A P51449 38170624
    905503 8x7e:C (2.3) BS01 peptide N/A N/A P51449 38170624
    905504 8x7e:C (2.3) BS02 YAL N/A N/A P51449 38170624
    905505 8x7e:E (2.3) BS01 peptide N/A N/A P51449 38170624
    905506 8x7e:E (2.3) BS02 YAL N/A N/A P51449 38170624
    905507 8x7e:G (2.3) BS01 peptide N/A N/A P51449 38170624
    905508 8x7e:G (2.3) BS02 YAL N/A N/A P51449 38170624
    905509 8x7f:A (2.66) BS01 NAD N/A N/A P27278 N/A
    905510 8x7f:D (2.66) BS01 NAD N/A N/A P27278 N/A
    905511 8x7f:G (2.66) BS01 NAD N/A N/A P27278 N/A
    905512 8x7f:J (2.66) BS01 NAD N/A N/A P27278 N/A
    905513 8x7i:A (3.27) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    905514 8x7i:A (3.27) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    905515 8x7i:B (3.27) BS01 dna N/A GO:0003677 ... P62805 N/A
    905516 8x7i:B (3.27) BS02 dna N/A GO:0003677 ... P62805 N/A
    905517 8x7i:C (3.27) BS01 dna N/A GO:0000786 ... P04908 N/A
    905518 8x7i:C (3.27) BS02 dna N/A GO:0000786 ... P04908 N/A
    905519 8x7i:D (3.27) BS01 dna N/A GO:0000786 ... O60814 N/A
    905520 8x7i:D (3.27) BS02 dna N/A GO:0000786 ... O60814 N/A
    905521 8x7i:E (3.27) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    905522 8x7i:E (3.27) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    905523 8x7i:F (3.27) BS01 dna N/A GO:0003677 ... P62805 N/A
    905524 8x7i:F (3.27) BS02 dna N/A GO:0003677 ... P62805 N/A
    905525 8x7i:G (3.27) BS01 dna N/A GO:0000786 ... P04908 N/A
    905526 8x7i:G (3.27) BS02 dna N/A GO:0000786 ... P04908 N/A
    905527 8x7i:H (3.27) BS01 dna N/A GO:0000786 ... O60814 N/A
    905528 8x7i:H (3.27) BS02 dna N/A GO:0000786 ... O60814 N/A
    905529 8x7i:L (3.27) BS01 ZN N/A N/A Q8IYW5 N/A
    905530 8x7i:L (3.27) BS02 ZN N/A N/A Q8IYW5 N/A
    905531 8x7j:A (3.39) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    905532 8x7j:A (3.39) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    905533 8x7j:B (3.39) BS01 dna N/A GO:0003677 ... P62805 N/A
    905534 8x7j:B (3.39) BS02 dna N/A GO:0003677 ... P62805 N/A
    905535 8x7j:C (3.39) BS01 dna N/A GO:0000786 ... P04908 N/A
    905536 8x7j:C (3.39) BS02 dna N/A GO:0000786 ... P04908 N/A
    905537 8x7j:D (3.39) BS01 dna N/A GO:0000786 ... O60814 N/A
    905538 8x7j:D (3.39) BS02 dna N/A GO:0000786 ... O60814 N/A
    905539 8x7j:E (3.39) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    905540 8x7j:E (3.39) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    905541 8x7j:F (3.39) BS01 dna N/A GO:0003677 ... P62805 N/A
    905542 8x7j:F (3.39) BS02 dna N/A GO:0003677 ... P62805 N/A
    905543 8x7j:G (3.39) BS01 dna N/A GO:0000786 ... P04908 N/A
    905544 8x7j:G (3.39) BS02 dna N/A GO:0000786 ... P04908 N/A
    905545 8x7j:H (3.39) BS01 dna N/A GO:0000786 ... O60814 N/A
    905546 8x7j:L (3.39) BS01 ZN N/A N/A Q8IYW5 N/A
    905547 8x7j:L (3.39) BS02 ZN N/A N/A Q8IYW5 N/A
    905548 8x7k:A (3.27) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    905549 8x7k:A (3.27) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    905550 8x7k:B (3.27) BS01 dna N/A GO:0003677 ... P62805 N/A
    905551 8x7k:B (3.27) BS02 dna N/A GO:0003677 ... P62805 N/A
    905552 8x7k:C (3.27) BS01 dna N/A GO:0000786 ... P04908 N/A
    905553 8x7k:C (3.27) BS02 dna N/A GO:0000786 ... P04908 N/A
    905554 8x7k:D (3.27) BS01 dna N/A GO:0000786 ... O60814 N/A
    905555 8x7k:D (3.27) BS02 dna N/A GO:0000786 ... O60814 N/A
    905556 8x7k:E (3.27) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    905557 8x7k:E (3.27) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    905558 8x7k:F (3.27) BS01 dna N/A GO:0003677 ... P62805 N/A
    905559 8x7k:F (3.27) BS02 dna N/A GO:0003677 ... P62805 N/A
    905560 8x7k:G (3.27) BS01 dna N/A GO:0000786 ... P04908 N/A
    905561 8x7k:G (3.27) BS02 dna N/A GO:0000786 ... P04908 N/A
    905562 8x7k:H (3.27) BS01 dna N/A GO:0000786 ... O60814 N/A
    905563 8x7k:H (3.27) BS02 dna N/A GO:0000786 ... O60814 N/A
    905564 8x7k:L (3.27) BS01 ZN N/A N/A Q8IYW5 N/A
    905565 8x7k:L (3.27) BS02 ZN N/A N/A Q8IYW5 N/A
    905566 8x7l:F (3.4) BS01 IZ8 N/A GO:0000122 ... P37840 39172784
    905567 8x7l:H (3.4) BS01 IZ8 N/A GO:0000122 ... P37840 39172784
    905568 8x7l:I (3.4) BS01 IZ8 N/A GO:0000122 ... P37840 39172784
    905569 8x7m:A (3.0) BS01 YA9 N/A GO:0000122 ... P37840 39172784
    905570 8x7m:B (3.0) BS01 YA9 N/A GO:0000122 ... P37840 39172784
    905571 8x7m:C (3.0) BS01 YA9 N/A GO:0000122 ... P37840 39172784
    905572 8x7m:C (3.0) BS02 YA9 N/A GO:0000122 ... P37840 39172784
    905573 8x7m:D (3.0) BS01 YA9 N/A GO:0000122 ... P37840 39172784
    905574 8x7m:E (3.0) BS01 YA9 N/A GO:0000122 ... P37840 39172784
    905575 8x7m:E (3.0) BS02 YA9 N/A GO:0000122 ... P37840 39172784
    905576 8x7m:F (3.0) BS01 YA9 N/A GO:0000122 ... P37840 39172784
    905577 8x7m:F (3.0) BS02 YA9 N/A GO:0000122 ... P37840 39172784
    905578 8x7m:F (3.0) BS03 YA9 N/A GO:0000122 ... P37840 39172784
    905579 8x7m:G (3.0) BS01 YA9 N/A GO:0000122 ... P37840 39172784
    905580 8x7m:G (3.0) BS02 YA9 N/A GO:0000122 ... P37840 39172784
    905581 8x7m:G (3.0) BS03 YA9 N/A GO:0000122 ... P37840 39172784
    905582 8x7m:H (3.0) BS01 YA9 N/A GO:0000122 ... P37840 39172784
    905583 8x7m:H (3.0) BS02 YA9 N/A GO:0000122 ... P37840 39172784
    905584 8x7m:I (3.0) BS01 YA9 N/A GO:0000122 ... P37840 39172784
    905585 8x7m:I (3.0) BS02 YA9 N/A GO:0000122 ... P37840 39172784
    905586 8x7m:I (3.0) BS03 YA9 N/A GO:0000122 ... P37840 39172784
    905587 8x7m:J (3.0) BS01 YA9 N/A GO:0000122 ... P37840 39172784
    905588 8x7m:J (3.0) BS02 YA9 N/A GO:0000122 ... P37840 39172784
    905589 8x7m:J (3.0) BS03 YA9 N/A GO:0000122 ... P37840 39172784
    905590 8x7m:J (3.0) BS04 YA9 N/A GO:0000122 ... P37840 39172784
    905591 8x7o:A (3.5) BS01 IZV N/A GO:0000122 ... P37840 39172784
    905592 8x7o:A (3.5) BS02 IZV N/A GO:0000122 ... P37840 39172784
    905593 8x7o:C (3.5) BS01 IZV N/A GO:0000122 ... P37840 39172784
    905594 8x7o:C (3.5) BS02 IZV N/A GO:0000122 ... P37840 39172784
    905595 8x7o:D (3.5) BS01 IZV N/A GO:0000122 ... P37840 39172784
    905596 8x7o:D (3.5) BS02 IZV N/A GO:0000122 ... P37840 39172784
    905597 8x7o:E (3.5) BS01 IZV N/A GO:0000122 ... P37840 39172784
    905598 8x7o:E (3.5) BS02 IZV N/A GO:0000122 ... P37840 39172784
    905599 8x7o:G (3.5) BS01 IZV N/A GO:0000122 ... P37840 39172784
    905600 8x7o:G (3.5) BS02 IZV N/A GO:0000122 ... P37840 39172784

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).