SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    905401 8vwq:W (3.1) BS01 rna N/A GO:0003735 ... C3SSG7 N/A
    905402 8vwq:W (3.1) BS02 rna N/A GO:0003735 ... C3SSG7 N/A
    905403 8vwq:X (3.1) BS01 rna N/A GO:0003735 ... A0A1X3JA73 N/A
    905404 8vwq:Y (3.1) BS01 rna N/A GO:0003735 ... N/A N/A
    905405 8vwq:Z (3.1) BS01 rna N/A GO:0003735 ... C3SR32 N/A
    905406 8vwq:Z (3.1) BS02 rna N/A GO:0003735 ... C3SR32 N/A
    905407 8vwq:a (3.1) BS01 rna N/A GO:0002181 ... P0A7M9 N/A
    905408 8vwq:b (3.1) BS01 rna N/A GO:0003735 ... N/A N/A
    905409 8vwq:c (3.1) BS01 rna N/A GO:0003735 ... C3SME7 N/A
    905410 8vwq:d (3.1) BS01 rna N/A GO:0003735 ... B7MGC4 N/A
    905411 8vwq:e (3.1) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    905412 8vwq:f (3.1) BS01 rna N/A GO:0003735 ... A0A0E2L017 N/A
    905413 8vwq:g (3.1) BS01 rna N/A GO:0003735 ... C3TPN2 N/A
    905414 8vwq:h (3.1) BS01 rna N/A GO:0003676 ... B7MCS9 N/A
    905415 8vwq:i (3.1) BS01 rna N/A GO:0000028 ... P0A7V8 N/A
    905416 8vwq:i (3.1) BS02 MG N/A GO:0000028 ... P0A7V8 N/A
    905417 8vwq:i (3.1) BS03 MG N/A GO:0000028 ... P0A7V8 N/A
    905418 8vwq:j (3.1) BS01 rna N/A GO:0000028 ... P0A7W1 N/A
    905419 8vwq:k (3.1) BS01 rna N/A GO:0002181 ... P02358 N/A
    905420 8vwq:l (3.1) BS01 rna N/A GO:0000028 ... P02359 N/A
    905421 8vwq:l (3.1) BS02 rna N/A GO:0000028 ... P02359 N/A
    905422 8vwq:m (3.1) BS01 rna N/A GO:0003735 ... N/A N/A
    905423 8vwq:n (3.1) BS01 rna N/A GO:0000028 ... C3SRY2 N/A
    905424 8vwq:n (3.1) BS02 rna N/A GO:0000028 ... C3SRY2 N/A
    905425 8vwq:o (3.1) BS01 rna N/A GO:0003723 ... N/A N/A
    905426 8vwq:p (3.1) BS01 rna N/A GO:0003735 ... B7MCR3 N/A
    905427 8vwq:q (3.1) BS01 rna N/A GO:0000028 ... C3SQR7 N/A
    905428 8vwq:r (3.1) BS01 rna N/A GO:0000049 ... A0A7U9IV78 N/A
    905429 8vwq:s (3.1) BS01 rna N/A GO:0003735 ... A0A2X1PQW4 N/A
    905430 8vwq:t (3.1) BS01 rna N/A GO:0000028 ... C3SSQ7 N/A
    905431 8vwq:t (3.1) BS02 rna N/A GO:0000028 ... C3SSQ7 N/A
    905432 8vwq:u (3.1) BS01 rna N/A GO:0000028 ... C3SYP2 N/A
    905433 8vwq:v (3.1) BS01 rna N/A GO:0000028 ... C3SQY7 N/A
    905434 8vwq:w (3.1) BS01 rna N/A GO:0003735 ... A0A0E2KXL3 N/A
    905435 8vwq:x (3.1) BS01 rna N/A GO:0003723 ... N/A N/A
    905436 8vwq:y (3.1) BS01 rna N/A GO:0000028 ... C3TRH7 N/A
    905437 8vwq:z (3.1) BS01 rna N/A GO:0003735 ... A0A0E2L2J1 N/A
    905438 8vws:A (3.1) BS01 dna N/A GO:0000786 ... Q71DI3 39715760
    905439 8vws:A (3.1) BS02 dna N/A GO:0000786 ... Q71DI3 39715760
    905440 8vws:B (3.1) BS01 dna N/A GO:0000781 ... P62805 39715760
    905441 8vws:B (3.1) BS02 dna N/A GO:0000781 ... P62805 39715760
    905442 8vws:C (3.1) BS01 dna N/A GO:0000786 ... P0C0S8 39715760
    905443 8vws:C (3.1) BS02 dna N/A GO:0000786 ... P0C0S8 39715760
    905444 8vws:D (3.1) BS01 dna N/A GO:0000786 ... P62807 39715760
    905445 8vws:D (3.1) BS02 dna N/A GO:0000786 ... P62807 39715760
    905446 8vws:E (3.1) BS01 dna N/A GO:0000786 ... Q71DI3 39715760
    905447 8vws:E (3.1) BS02 dna N/A GO:0000786 ... Q71DI3 39715760
    905448 8vws:F (3.1) BS01 dna N/A GO:0000781 ... P62805 39715760
    905449 8vws:F (3.1) BS02 dna N/A GO:0000781 ... P62805 39715760
    905450 8vws:G (3.1) BS01 dna N/A GO:0000786 ... P0C0S8 39715760
    905451 8vws:G (3.1) BS02 dna N/A GO:0000786 ... P0C0S8 39715760
    905452 8vws:H (3.1) BS01 dna N/A GO:0000786 ... P62807 39715760
    905453 8vwt:A (3.3) BS01 dna N/A GO:0000786 ... Q71DI3 39715760
    905454 8vwt:A (3.3) BS02 dna N/A GO:0000786 ... Q71DI3 39715760
    905455 8vwt:B (3.3) BS01 dna N/A GO:0000781 ... P62805 39715760
    905456 8vwt:B (3.3) BS02 dna N/A GO:0000781 ... P62805 39715760
    905457 8vwt:C (3.3) BS01 dna N/A GO:0000786 ... P0C0S8 39715760
    905458 8vwt:C (3.3) BS02 dna N/A GO:0000786 ... P0C0S8 39715760
    905459 8vwt:D (3.3) BS01 dna N/A GO:0000786 ... P62807 39715760
    905460 8vwt:D (3.3) BS02 dna N/A GO:0000786 ... P62807 39715760
    905461 8vwt:E (3.3) BS01 dna N/A GO:0000786 ... Q71DI3 39715760
    905462 8vwt:E (3.3) BS02 dna N/A GO:0000786 ... Q71DI3 39715760
    905463 8vwt:F (3.3) BS01 dna N/A GO:0000781 ... P62805 39715760
    905464 8vwt:F (3.3) BS02 dna N/A GO:0000781 ... P62805 39715760
    905465 8vwt:G (3.3) BS01 dna N/A GO:0000786 ... P0C0S8 39715760
    905466 8vwt:G (3.3) BS02 dna N/A GO:0000786 ... P0C0S8 39715760
    905467 8vwt:H (3.3) BS01 dna N/A GO:0000786 ... P62807 39715760
    905468 8vwt:H (3.3) BS02 dna N/A GO:0000786 ... P62807 39715760
    905469 8vwt:K (3.3) BS01 dna N/A GO:0000978 ... O15527 39715760
    905470 8vwt:K (3.3) BS02 dna N/A GO:0000978 ... O15527 39715760
    905471 8vwu:A (3.0) BS01 dna N/A GO:0000786 ... Q71DI3 39715760
    905472 8vwu:A (3.0) BS02 dna N/A GO:0000786 ... Q71DI3 39715760
    905473 8vwu:B (3.0) BS01 dna N/A GO:0000781 ... P62805 39715760
    905474 8vwu:B (3.0) BS02 dna N/A GO:0000781 ... P62805 39715760
    905475 8vwu:C (3.0) BS01 dna N/A GO:0000786 ... P0C0S8 39715760
    905476 8vwu:C (3.0) BS02 dna N/A GO:0000786 ... P0C0S8 39715760
    905477 8vwu:D (3.0) BS01 dna N/A GO:0000786 ... P62807 39715760
    905478 8vwu:D (3.0) BS02 dna N/A GO:0000786 ... P62807 39715760
    905479 8vwu:E (3.0) BS01 dna N/A GO:0000786 ... Q71DI3 39715760
    905480 8vwu:E (3.0) BS02 dna N/A GO:0000786 ... Q71DI3 39715760
    905481 8vwu:F (3.0) BS01 dna N/A GO:0000781 ... P62805 39715760
    905482 8vwu:F (3.0) BS02 dna N/A GO:0000781 ... P62805 39715760
    905483 8vwu:G (3.0) BS01 dna N/A GO:0000786 ... P0C0S8 39715760
    905484 8vwu:G (3.0) BS02 dna N/A GO:0000786 ... P0C0S8 39715760
    905485 8vwu:H (3.0) BS01 dna N/A GO:0000786 ... P62807 39715760
    905486 8vwu:H (3.0) BS02 dna N/A GO:0000786 ... P62807 39715760
    905487 8vwv:A (3.6) BS01 dna N/A GO:0000786 ... Q71DI3 39715760
    905488 8vwv:A (3.6) BS02 dna N/A GO:0000786 ... Q71DI3 39715760
    905489 8vwv:B (3.6) BS01 dna N/A GO:0000781 ... P62805 39715760
    905490 8vwv:B (3.6) BS02 dna N/A GO:0000781 ... P62805 39715760
    905491 8vwv:C (3.6) BS01 dna N/A GO:0000786 ... P0C0S8 39715760
    905492 8vwv:C (3.6) BS02 dna N/A GO:0000786 ... P0C0S8 39715760
    905493 8vwv:D (3.6) BS01 dna N/A GO:0000786 ... P62807 39715760
    905494 8vwv:E (3.6) BS01 dna N/A GO:0000786 ... Q71DI3 39715760
    905495 8vwv:E (3.6) BS02 dna N/A GO:0000786 ... Q71DI3 39715760
    905496 8vwv:F (3.6) BS01 dna N/A GO:0000781 ... P62805 39715760
    905497 8vwv:F (3.6) BS02 dna N/A GO:0000781 ... P62805 39715760
    905498 8vwv:G (3.6) BS01 dna N/A GO:0000786 ... P0C0S8 39715760
    905499 8vwv:G (3.6) BS02 dna N/A GO:0000786 ... P0C0S8 39715760
    905500 8vwv:H (3.6) BS01 dna N/A GO:0000786 ... P62807 39715760
    905501 8vwv:K (3.6) BS01 dna N/A GO:0000978 ... O15527 39715760
    905502 8vwv:K (3.6) BS02 dna N/A GO:0000978 ... O15527 39715760
    905503 8vwy:E (2.78) BS01 CA N/A N/A Q9ESN4 40316654
    905504 8vwy:E (2.78) BS02 CA N/A N/A Q9ESN4 40316654
    905505 8vwy:H (2.78) BS01 CA N/A N/A Q9ESN4 40316654
    905506 8vwy:H (2.78) BS02 CA N/A N/A Q9ESN4 40316654
    905507 8vwy:I (2.78) BS01 CA N/A N/A Q9ESN4 40316654
    905508 8vwy:I (2.78) BS02 CA N/A N/A Q9ESN4 40316654
    905509 8vwz:A (2.33) BS01 F3Q N/A GO:0005515 ... P0AEX9
    P10415
    Q07817
    39969248
    905510 8vx0:A (3.05) BS01 LSN 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53
    GO:0004497 ... P11712 38852293
    905511 8vx0:A (3.05) BS02 LSN 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53
    GO:0004497 ... P11712 38852293
    905512 8vx0:A (3.05) BS03 HEM 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53
    GO:0004497 ... P11712 38852293
    905513 8vx1:A (3.4) BS01 dna N/A GO:0000287 ... Q05B79 40833853
    905514 8vx1:A (3.4) BS02 dna N/A GO:0000287 ... Q05B79 40833853
    905515 8vx4:A (3.7) BS01 dna N/A GO:0000978 ... O15527 39341999
    905516 8vx4:A (3.7) BS02 dna N/A GO:0000978 ... O15527 39341999
    905517 8vx5:A (3.3) BS01 dna N/A GO:0000786 ... P84233 39341999
    905518 8vx5:A (3.3) BS02 dna N/A GO:0000786 ... P84233 39341999
    905519 8vx5:B (3.3) BS01 dna N/A GO:0000786 ... P62799 39341999
    905520 8vx5:B (3.3) BS02 dna N/A GO:0000786 ... P62799 39341999
    905521 8vx5:C (3.3) BS01 dna N/A GO:0000786 ... P06897 39341999
    905522 8vx5:C (3.3) BS02 dna N/A GO:0000786 ... P06897 39341999
    905523 8vx5:D (3.3) BS01 dna N/A GO:0000786 ... P02281 39341999
    905524 8vx5:D (3.3) BS02 dna N/A GO:0000786 ... P02281 39341999
    905525 8vx5:E (3.3) BS01 dna N/A GO:0000786 ... P84233 39341999
    905526 8vx5:E (3.3) BS02 dna N/A GO:0000786 ... P84233 39341999
    905527 8vx5:F (3.3) BS01 dna N/A GO:0000786 ... P62799 39341999
    905528 8vx5:F (3.3) BS02 dna N/A GO:0000786 ... P62799 39341999
    905529 8vx5:G (3.3) BS01 dna N/A GO:0000786 ... P06897 39341999
    905530 8vx5:G (3.3) BS02 dna N/A GO:0000786 ... P06897 39341999
    905531 8vx5:H (3.3) BS01 dna N/A GO:0000786 ... P02281 39341999
    905532 8vx5:H (3.3) BS02 dna N/A GO:0000786 ... P02281 39341999
    905533 8vx6:A (3.2) BS01 dna N/A GO:0000786 ... P84233 39341999
    905534 8vx6:A (3.2) BS02 dna N/A GO:0000786 ... P84233 39341999
    905535 8vx6:B (3.2) BS01 dna N/A GO:0000786 ... P62799 39341999
    905536 8vx6:B (3.2) BS02 dna N/A GO:0000786 ... P62799 39341999
    905537 8vx6:C (3.2) BS01 dna N/A GO:0000786 ... P06897 39341999
    905538 8vx6:C (3.2) BS02 dna N/A GO:0000786 ... P06897 39341999
    905539 8vx6:D (3.2) BS01 dna N/A GO:0000786 ... P02281 39341999
    905540 8vx6:D (3.2) BS02 dna N/A GO:0000786 ... P02281 39341999
    905541 8vx6:E (3.2) BS01 dna N/A GO:0000786 ... P84233 39341999
    905542 8vx6:E (3.2) BS02 dna N/A GO:0000786 ... P84233 39341999
    905543 8vx6:F (3.2) BS01 dna N/A GO:0000786 ... P62799 39341999
    905544 8vx6:F (3.2) BS02 dna N/A GO:0000786 ... P62799 39341999
    905545 8vx6:G (3.2) BS01 dna N/A GO:0000786 ... P06897 39341999
    905546 8vx6:G (3.2) BS02 dna N/A GO:0000786 ... P06897 39341999
    905547 8vx6:H (3.2) BS01 dna N/A GO:0000786 ... P02281 39341999
    905548 8vx6:H (3.2) BS02 dna N/A GO:0000786 ... P02281 39341999
    905549 8vx6:K (3.2) BS01 dna N/A GO:0000978 ... O15527 39341999
    905550 8vx7:A (2.75) BS01 peptide N/A N/A N/A N/A
    905551 8vx7:B (2.75) BS01 peptide N/A N/A N/A N/A
    905552 8vx8:A (3.4) BS01 dna N/A GO:0000287 ... Q05B79 40833853
    905553 8vx8:A (3.4) BS02 dna N/A GO:0000287 ... Q05B79 40833853
    905554 8vxa:A (2.79) BS01 dna ? GO:0003676 ... A0A426EXV0 38464307
    905555 8vxa:A (2.79) BS02 dna ? GO:0003676 ... A0A426EXV0 38464307
    905556 8vxb:A (1.85) BS01 5I0 N/A N/A A0A825BAZ6 39246239
    905557 8vxc:A (2.93) BS01 dna ? GO:0003676 ... A0A426EXV0 38464307
    905558 8vxc:A (2.93) BS02 dna ? GO:0003676 ... A0A426EXV0 38464307
    905559 8vxd:A (2.47) BS01 A1AD7 2.7.11.1
    2.7.11.26
    GO:0004672 ... P48730 38628796
    905560 8vxd:B (2.47) BS01 A1AD7 2.7.11.1
    2.7.11.26
    GO:0004672 ... P48730 38628796
    905561 8vxe:A (1.85) BS01 A1AD9 2.7.11.24 GO:0000165 ... Q16539 38628796
    905562 8vxe:A (1.85) BS02 A1AD9 2.7.11.24 GO:0000165 ... Q16539 38628796
    905563 8vxf:A (2.28) BS01 A1AD8 2.7.11.1
    2.7.11.26
    GO:0004672 ... P48730 38628796
    905564 8vxf:B (2.28) BS01 A1AD8 2.7.11.1
    2.7.11.26
    GO:0004672 ... P48730 38628796
    905565 8vxg:A (1.78) BS01 HEM N/A GO:0004497 ... N/A 40417289
    905566 8vxg:A (1.78) BS02 VD3 N/A GO:0004497 ... N/A 40417289
    905567 8vxi:A (2.057) BS01 A1LXL N/A GO:0004497 ... N/A 40417289
    905568 8vxi:A (2.057) BS02 HEM N/A GO:0004497 ... N/A 40417289
    905569 8vxk:A (1.85) BS01 PO4 N/A GO:0009058 ... P94426 39720892
    905570 8vxl:A (2.24) BS01 A1AEJ N/A GO:0009058 ... P94426 39720892
    905571 8vxl:B (2.24) BS01 A1AEJ N/A GO:0009058 ... P94426 39720892
    905572 8vxl:B (2.24) BS02 PO4 N/A GO:0009058 ... P94426 39720892
    905573 8vxm:A (2.1) BS01 F3Q N/A GO:0005515 ... P0AEX9
    P10415
    Q07817
    39969248
    905574 8vxt:A (4.25) BS01 AGS N/A GO:0005524 ... Q9D5T0 39605435
    905575 8vxt:B (4.25) BS01 AGS N/A GO:0005524 ... Q9D5T0 39605435
    905576 8vxt:C (4.25) BS01 AGS N/A GO:0005524 ... Q9D5T0 39605435
    905577 8vxt:D (4.25) BS01 AGS N/A GO:0005524 ... Q9D5T0 39605435
    905578 8vxt:E (4.25) BS01 AGS N/A GO:0005524 ... Q9D5T0 39605435
    905579 8vxt:F (4.25) BS01 AGS N/A GO:0005524 ... Q9D5T0 39605435
    905580 8vxu:A (2.29) BS01 16A ? GO:0005886 ... A0ACD6B9S6 38865266
    905581 8vxu:B (2.29) BS01 16A ? GO:0005886 ... A0ACD6B9S6 38865266
    905582 8vxu:C (2.29) BS01 16A ? GO:0005886 ... A0ACD6B9S6 38865266
    905583 8vxu:C (2.29) BS02 16A ? GO:0005886 ... A0ACD6B9S6 38865266
    905584 8vxu:D (2.29) BS01 16A ? GO:0005886 ... A0ACD6B9S6 38865266
    905585 8vxu:E (2.29) BS01 16A N/A N/A N/A 38865266
    905586 8vxy:B (3.19) BS01 dna ? GO:0003676 ... A0A426EXV0 38464307
    905587 8vxy:B (3.19) BS02 dna ? GO:0003676 ... A0A426EXV0 38464307
    905588 8vxy:B (3.19) BS03 ATP ? GO:0003676 ... A0A426EXV0 38464307
    905589 8vy3:B (2.98) BS01 SF4 N/A GO:0006269 ... P49643 39231985
    905590 8vy3:C (2.98) BS01 ZN N/A GO:0000166 ... P09884 39231985
    905591 8vy3:C (2.98) BS02 ZN N/A GO:0000166 ... P09884 39231985
    905592 8vy4:A (1.7) BS01 peptide N/A N/A N/A 38962811
    905593 8vy4:B (1.7) BS01 peptide N/A N/A N/A 38962811
    905594 8vy7:R (2.68) BS01 A1AEI ? GO:0001580 ... Q9NYV8 38600377
    905595 8vy7:R (2.68) BS02 CLR ? GO:0001580 ... Q9NYV8 38600377
    905596 8vy8:A (2.4) BS01 peptide ? GO:0005515 ... P60615 38347541
    905597 8vy8:B (2.4) BS01 peptide ? GO:0005515 ... P60615 38347541
    905598 8vy8:E (2.4) BS01 peptide ? GO:0005515 ... P60615 38347541
    905599 8vy8:E (2.4) BS02 peptide ? GO:0005515 ... P60615 38347541
    905600 8vy8:G (2.4) BS01 peptide ? GO:0005515 ... P60615 38347541

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).