SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    905801 8xaw:B (2.73) BS02 dna N/A N/A N/A 38834762
    905802 8xaw:B (2.73) BS03 ANP N/A N/A N/A 38834762
    905803 8xaw:C (2.73) BS01 dna N/A N/A N/A 38834762
    905804 8xaw:C (2.73) BS02 dna N/A N/A N/A 38834762
    905805 8xaw:C (2.73) BS03 ANP N/A N/A N/A 38834762
    905806 8xaw:C (2.73) BS04 ANP N/A N/A N/A 38834762
    905807 8xaw:C (2.73) BS05 MG N/A N/A N/A 38834762
    905808 8xaw:D (2.73) BS01 dna N/A N/A N/A 38834762
    905809 8xaw:D (2.73) BS02 dna N/A N/A N/A 38834762
    905810 8xaw:D (2.73) BS03 ANP N/A N/A N/A 38834762
    905811 8xaw:D (2.73) BS04 MG N/A N/A N/A 38834762
    905812 8xaw:E (2.73) BS01 dna N/A N/A N/A 38834762
    905813 8xaw:E (2.73) BS02 ADP N/A N/A N/A 38834762
    905814 8xaw:E (2.73) BS03 MG N/A N/A N/A 38834762
    905815 8xaw:F (2.73) BS01 ADP N/A N/A N/A 38834762
    905816 8xaw:F (2.73) BS02 MG N/A N/A N/A 38834762
    905817 8xax:A (2.92) BS01 dna N/A N/A N/A 38834762
    905818 8xax:A (2.92) BS02 dna N/A N/A N/A 38834762
    905819 8xax:A (2.92) BS03 ANP N/A N/A N/A 38834762
    905820 8xax:B (2.92) BS01 dna N/A N/A N/A 38834762
    905821 8xax:B (2.92) BS02 dna N/A N/A N/A 38834762
    905822 8xax:B (2.92) BS03 ANP N/A N/A N/A 38834762
    905823 8xax:C (2.92) BS01 dna N/A N/A N/A 38834762
    905824 8xax:C (2.92) BS02 dna N/A N/A N/A 38834762
    905825 8xax:C (2.92) BS03 ANP N/A N/A N/A 38834762
    905826 8xax:C (2.92) BS04 ANP N/A N/A N/A 38834762
    905827 8xax:C (2.92) BS05 MG N/A N/A N/A 38834762
    905828 8xax:D (2.92) BS01 dna N/A N/A N/A 38834762
    905829 8xax:E (2.92) BS01 ADP N/A N/A N/A 38834762
    905830 8xax:E (2.92) BS02 MG N/A N/A N/A 38834762
    905831 8xax:F (2.92) BS01 ADP N/A N/A N/A 38834762
    905832 8xax:F (2.92) BS02 MG N/A N/A N/A 38834762
    905833 8xay:A (2.81) BS01 AGS N/A N/A N/A 38834762
    905834 8xay:A (2.81) BS02 MG N/A N/A N/A 38834762
    905835 8xay:B (2.81) BS01 dna N/A N/A N/A 38834762
    905836 8xay:B (2.81) BS02 dna N/A N/A N/A 38834762
    905837 8xay:B (2.81) BS03 AGS N/A N/A N/A 38834762
    905838 8xay:C (2.81) BS01 dna N/A N/A N/A 38834762
    905839 8xay:C (2.81) BS02 dna N/A N/A N/A 38834762
    905840 8xay:C (2.81) BS03 AGS N/A N/A N/A 38834762
    905841 8xay:C (2.81) BS04 AGS N/A N/A N/A 38834762
    905842 8xay:D (2.81) BS01 dna N/A N/A N/A 38834762
    905843 8xay:D (2.81) BS02 dna N/A N/A N/A 38834762
    905844 8xay:D (2.81) BS03 AGS N/A N/A N/A 38834762
    905845 8xay:D (2.81) BS04 MG N/A N/A N/A 38834762
    905846 8xay:E (2.81) BS01 dna N/A N/A N/A 38834762
    905847 8xay:E (2.81) BS02 ADP N/A N/A N/A 38834762
    905848 8xay:E (2.81) BS03 MG N/A N/A N/A 38834762
    905849 8xay:F (2.81) BS01 ADP N/A N/A N/A 38834762
    905850 8xay:F (2.81) BS02 MG N/A N/A N/A 38834762
    905851 8xb0:A (1.12) BS01 YN8 N/A GO:0004478 ... P31153 38818879
    905852 8xb0:A (1.12) BS02 SAM N/A GO:0004478 ... P31153 38818879
    905853 8xb1:A (2.85) BS01 ZX3 N/A N/A P36888 38751627
    905854 8xb2:A (3.04) BS01 YNT N/A GO:0005515 ... P0AEX9
    P23975
    39143211
    905855 8xb3:A (2.8) BS01 YMN N/A GO:0005515 ... P0AEX9
    P23975
    39143211
    905856 8xba:A (1.48) BS01 XYS N/A N/A A0A090T8V4 N/A
    905857 8xba:A (1.48) BS02 XYP N/A N/A A0A090T8V4 N/A
    905858 8xbb:A (1.57) BS01 XYP N/A N/A A0A090T8V4 N/A
    905859 8xbb:A (1.57) BS02 XYP N/A N/A A0A090T8V4 N/A
    905860 8xbc:A (1.36) BS01 XYP N/A N/A A0A090T8V4 N/A
    905861 8xbc:A (1.36) BS02 XYP N/A N/A A0A090T8V4 N/A
    905862 8xbc:A (1.36) BS03 XYP N/A N/A A0A090T8V4 N/A
    905863 8xbe:A (3.4) BS01 KW0 ? GO:0004930 ... Q9UPC5 38326347
    905864 8xbg:A (3.43) BS01 KW0 ? GO:0004930 ... Q9UPC5 38326347
    905865 8xbh:R (2.83) BS01 KW3 ? GO:0004930 ... Q9UPC5 38326347
    905866 8xbi:R (3.06) BS01 KW3 ? GO:0004930 ... Q9UPC5 38326347
    905867 8xbj:A (1.55) BS01 HEM N/A GO:0004601 ... P02185 N/A
    905868 8xbj:A (1.55) BS02 Y6C N/A GO:0004601 ... P02185 N/A
    905869 8xbj:A (1.55) BS03 Y6C N/A GO:0004601 ... P02185 N/A
    905870 8xbk:A (2.42) BS01 YR9 N/A GO:0000166 ... P09467 39520680
    905871 8xbk:B (2.42) BS01 YR9 N/A GO:0000166 ... P09467 39520680
    905872 8xbk:C (2.42) BS01 YR9 N/A GO:0000166 ... P09467 39520680
    905873 8xbk:C (2.42) BS02 MG N/A GO:0000166 ... P09467 39520680
    905874 8xbk:D (2.42) BS01 YR9 N/A GO:0000166 ... P09467 39520680
    905875 8xbk:D (2.42) BS02 MG N/A GO:0000166 ... P09467 39520680
    905876 8xbn:A (1.35) BS01 COA N/A GO:0006591 ... Q9ZV05 N/A
    905877 8xbn:C (1.35) BS01 COA N/A GO:0006591 ... Q9ZV05 N/A
    905878 8xbo:A (2.53) BS01 TPP N/A GO:0003984 ... P20906 N/A
    905879 8xbo:A (2.53) BS02 MG N/A GO:0003984 ... P20906 N/A
    905880 8xbp:A (1.99) BS01 ACO N/A GO:0006591 ... Q9ZV05 N/A
    905881 8xbp:A (1.99) BS02 CA N/A GO:0006591 ... Q9ZV05 N/A
    905882 8xbp:A (1.99) BS03 CA N/A GO:0006591 ... Q9ZV05 N/A
    905883 8xbp:Q (1.99) BS01 CA N/A GO:0006591 ... Q9ZV05 N/A
    905884 8xbp:Q (1.99) BS02 ACO N/A GO:0006591 ... Q9ZV05 N/A
    905885 8xbp:Q (1.99) BS03 CA N/A GO:0006591 ... Q9ZV05 N/A
    905886 8xbq:A (2.05) BS01 TPP N/A GO:0003984 ... P20906 N/A
    905887 8xbq:A (2.05) BS02 MG N/A GO:0003984 ... P20906 N/A
    905888 8xbr:A (1.92) BS01 TPP N/A GO:0003984 ... P20906 N/A
    905889 8xbr:A (1.92) BS02 MG N/A GO:0003984 ... P20906 N/A
    905890 8xbs:A (2.21) BS01 ZN ? GO:0003723 ... Q9GZC8 38742627
    905891 8xbs:A (2.21) BS02 CLR ? GO:0003723 ... Q9GZC8 38742627
    905892 8xbs:A (2.21) BS03 CLR ? GO:0003723 ... Q9GZC8 38742627
    905893 8xbs:A (2.21) BS04 CLR ? GO:0003723 ... Q9GZC8 38742627
    905894 8xbs:B (2.21) BS01 ZN ? GO:0003723 ... Q9GZC8 38742627
    905895 8xbs:B (2.21) BS02 CLR ? GO:0003723 ... Q9GZC8 38742627
    905896 8xbs:B (2.21) BS03 CLR ? GO:0003723 ... Q9GZC8 38742627
    905897 8xbs:B (2.21) BS04 CLR ? GO:0003723 ... Q9GZC8 38742627
    905898 8xbt:A (4.12) BS01 dna ? GO:0000786 ... P68431 38509361
    905899 8xbt:A (4.12) BS02 dna ? GO:0000786 ... P68431 38509361
    905900 8xbt:B (4.12) BS01 dna ? GO:0000781 ... P62805 38509361
    905901 8xbt:B (4.12) BS02 dna ? GO:0000781 ... P62805 38509361
    905902 8xbt:C (4.12) BS01 dna ? GO:0000786 ... P04908 38509361
    905903 8xbt:C (4.12) BS02 dna ? GO:0000786 ... P04908 38509361
    905904 8xbt:D (4.12) BS01 dna ? GO:0000786 ... P06899 38509361
    905905 8xbt:D (4.12) BS02 dna ? GO:0000786 ... P06899 38509361
    905906 8xbt:E (4.12) BS01 dna ? GO:0000786 ... P68431 38509361
    905907 8xbt:E (4.12) BS02 dna ? GO:0000786 ... P68431 38509361
    905908 8xbt:F (4.12) BS01 dna ? GO:0000781 ... P62805 38509361
    905909 8xbt:F (4.12) BS02 dna ? GO:0000781 ... P62805 38509361
    905910 8xbt:G (4.12) BS01 dna ? GO:0000786 ... P04908 38509361
    905911 8xbt:G (4.12) BS02 dna ? GO:0000786 ... P04908 38509361
    905912 8xbt:H (4.12) BS01 dna ? GO:0000786 ... P06899 38509361
    905913 8xbt:H (4.12) BS02 dna ? GO:0000786 ... P06899 38509361
    905914 8xbt:O (4.12) BS01 dna ? GO:0000150 ... Q06609 38509361
    905915 8xbu:A (4.24) BS01 dna ? GO:0000786 ... P68431 38509361
    905916 8xbu:A (4.24) BS02 dna ? GO:0000786 ... P68431 38509361
    905917 8xbu:B (4.24) BS01 dna ? GO:0000781 ... P62805 38509361
    905918 8xbu:B (4.24) BS02 dna ? GO:0000781 ... P62805 38509361
    905919 8xbu:C (4.24) BS01 dna ? GO:0000786 ... P04908 38509361
    905920 8xbu:C (4.24) BS02 dna ? GO:0000786 ... P04908 38509361
    905921 8xbu:D (4.24) BS01 dna ? GO:0000786 ... P06899 38509361
    905922 8xbu:D (4.24) BS02 dna ? GO:0000786 ... P06899 38509361
    905923 8xbu:E (4.24) BS01 dna ? GO:0000786 ... P68431 38509361
    905924 8xbu:E (4.24) BS02 dna ? GO:0000786 ... P68431 38509361
    905925 8xbu:F (4.24) BS01 dna ? GO:0000781 ... P62805 38509361
    905926 8xbu:F (4.24) BS02 dna ? GO:0000781 ... P62805 38509361
    905927 8xbu:G (4.24) BS01 dna ? GO:0000786 ... P04908 38509361
    905928 8xbu:G (4.24) BS02 dna ? GO:0000786 ... P04908 38509361
    905929 8xbu:H (4.24) BS01 dna ? GO:0000786 ... P06899 38509361
    905930 8xbu:H (4.24) BS02 dna ? GO:0000786 ... P06899 38509361
    905931 8xbu:L (4.24) BS01 dna ? GO:0000150 ... Q06609 38509361
    905932 8xbu:M (4.24) BS01 dna ? GO:0000150 ... Q06609 38509361
    905933 8xbu:R (4.24) BS01 dna ? GO:0000150 ... Q06609 38509361
    905934 8xbw:E (2.89) BS01 dna ? GO:0000786 ... P68431 38509361
    905935 8xbw:F (2.89) BS01 dna ? GO:0000781 ... P62805 38509361
    905936 8xc1:A (2.21) BS01 rna ? GO:0003723 ... Q9GZC8 38742627
    905937 8xc1:A (2.21) BS02 rna ? GO:0003723 ... Q9GZC8 38742627
    905938 8xc1:A (2.21) BS03 ZN ? GO:0003723 ... Q9GZC8 38742627
    905939 8xc1:A (2.21) BS04 CLR ? GO:0003723 ... Q9GZC8 38742627
    905940 8xc1:A (2.21) BS05 CLR ? GO:0003723 ... Q9GZC8 38742627
    905941 8xc1:A (2.21) BS06 CLR ? GO:0003723 ... Q9GZC8 38742627
    905942 8xc1:B (2.21) BS01 rna ? GO:0003723 ... Q9GZC8 38742627
    905943 8xc1:B (2.21) BS02 rna ? GO:0003723 ... Q9GZC8 38742627
    905944 8xc1:B (2.21) BS03 ZN ? GO:0003723 ... Q9GZC8 38742627
    905945 8xc1:B (2.21) BS04 CLR ? GO:0003723 ... Q9GZC8 38742627
    905946 8xc1:B (2.21) BS05 CLR ? GO:0003723 ... Q9GZC8 38742627
    905947 8xc1:B (2.21) BS06 CLR ? GO:0003723 ... Q9GZC8 38742627
    905948 8xc2:A (1.5) BS01 HEM N/A GO:0004601 ... P02185 N/A
    905949 8xc2:A (1.5) BS02 Y6C N/A GO:0004601 ... P02185 N/A
    905950 8xc2:A (1.5) BS03 Y6C N/A GO:0004601 ... P02185 N/A
    905951 8xc3:A (1.79) BS01 CO N/A GO:0046872 ... B6U9L0 39133859
    905952 8xc3:A (1.79) BS02 AKG N/A GO:0046872 ... B6U9L0 39133859
    905953 8xc3:B (1.79) BS01 CO N/A GO:0046872 ... B6U9L0 39133859
    905954 8xc3:B (1.79) BS02 AKG N/A GO:0046872 ... B6U9L0 39133859
    905955 8xc3:B (1.79) BS03 92X N/A GO:0046872 ... B6U9L0 39133859
    905956 8xc4:B (3.24) BS01 FUC ? GO:0019031 ... Q4VCP5 38773072
    905957 8xc9:A (1.89) BS01 GLC N/A N/A A0A1H4DB11 N/A
    905958 8xc9:A (1.89) BS02 AC1 N/A N/A A0A1H4DB11 N/A
    905959 8xc9:B (1.89) BS01 GLC N/A N/A A0A1H4DB11 N/A
    905960 8xc9:B (1.89) BS02 AC1 N/A N/A A0A1H4DB11 N/A
    905961 8xca:A (3.1) BS01 rna N/A N/A N/A N/A
    905962 8xca:A (3.1) BS02 dna N/A N/A N/A N/A
    905963 8xca:A (3.1) BS03 dna N/A N/A N/A N/A
    905964 8xcc:A (3.2) BS01 rna N/A N/A N/A N/A
    905965 8xcc:A (3.2) BS02 dna N/A N/A N/A N/A
    905966 8xcc:A (3.2) BS03 dna N/A N/A N/A N/A
    905967 8xcd:A (3.49) BS01 TCH N/A GO:0008508 ... G7PAR4 39455604
    905968 8xcd:A (3.49) BS02 TCH N/A GO:0008508 ... G7PAR4 39455604
    905969 8xcg:L (3.46) BS01 SF4 ? GO:0030430 ... P03738 38760367
    905970 8xcg:N (3.46) BS01 SF4 ? GO:0030430 ... P03738 38760367
    905971 8xcg:f (3.46) BS01 SF4 ? GO:0030430 ... P03738 38760367
    905972 8xcm:A (3.08) BS01 FAD 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    905973 8xcm:A (3.08) BS02 F3S 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    905974 8xcm:C (3.08) BS01 HEC ? GO:0005506 ... M1V1V5 N/A
    905975 8xcm:C (3.08) BS02 HEC ? GO:0005506 ... M1V1V5 N/A
    905976 8xcm:C (3.08) BS03 HEC ? GO:0005506 ... M1V1V5 N/A
    905977 8xcm:C (3.08) BS04 U10 ? GO:0005506 ... M1V1V5 N/A
    905978 8xcn:A (3.02) BS01 FAD 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    905979 8xcn:A (3.02) BS02 F3S 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    905980 8xcn:C (3.02) BS01 HEC ? GO:0005506 ... M1V1V5 N/A
    905981 8xcn:C (3.02) BS02 HEC ? GO:0005506 ... M1V1V5 N/A
    905982 8xcn:C (3.02) BS03 HEC ? GO:0005506 ... M1V1V5 N/A
    905983 8xcn:C (3.02) BS04 U10 ? GO:0005506 ... M1V1V5 N/A
    905984 8xco:A (2.64) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    905985 8xcp:A (2.64) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    905986 8xcp:A (2.64) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    905987 8xcq:A (2.6) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    905988 8xcq:A (2.6) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    905989 8xcr:A (2.6) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    905990 8xcr:A (2.6) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    905991 8xcs:A (2.63) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    905992 8xcs:A (2.63) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 38750092
    905993 8xct:A (2.87) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    905994 8xcu:A (2.83) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    905995 8xcu:A (2.83) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    905996 8xcv:A (2.83) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    905997 8xcw:A (2.87) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    905998 8xcw:A (2.87) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 38750092
    905999 8xcx:A (2.83) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    906000 8xcx:A (2.83) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).