SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    906001 8xcy:A (2.91) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    906002 8xcy:A (2.91) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    906003 8xcz:A (2.83) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    906004 8xcz:A (2.83) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    906005 8xd0:A (2.83) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    906006 8xd0:A (2.83) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 38750092
    906007 8xd1:A (2.96) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    906008 8xd2:A (2.64) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    906009 8xd3:A (2.87) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    906010 8xd3:A (2.87) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    906011 8xd4:A (2.87) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    906012 8xd5:A (2.75) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    906013 8xd5:A (2.75) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    906014 8xd6:A (2.79) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    906015 8xd6:A (2.79) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 38750092
    906016 8xd6:A (2.79) BS03 AKG 1.4.1.3 GO:0004352 ... O74024 38750092
    906017 8xd7:A (2.6) BS01 A1LU9 N/A N/A Q15849 39587082
    906018 8xd7:A (2.6) BS02 A1LU9 N/A N/A Q15849 39587082
    906019 8xd7:B (2.6) BS01 A1LU9 N/A N/A Q15849 39587082
    906020 8xd7:B (2.6) BS02 A1LU9 N/A N/A Q15849 39587082
    906021 8xd7:C (2.6) BS01 A1LU9 N/A N/A Q15849 39587082
    906022 8xd7:C (2.6) BS02 A1LU9 N/A N/A Q15849 39587082
    906023 8xda:A (3.0) BS01 URE N/A N/A Q15849 39587082
    906024 8xda:A (3.0) BS02 URE N/A N/A Q15849 39587082
    906025 8xda:B (3.0) BS01 URE N/A N/A Q15849 39587082
    906026 8xda:B (3.0) BS02 URE N/A N/A Q15849 39587082
    906027 8xda:C (3.0) BS01 URE N/A N/A Q15849 39587082
    906028 8xda:C (3.0) BS02 URE N/A N/A Q15849 39587082
    906029 8xdb:A (3.3) BS01 A1LYJ N/A N/A Q15849 39587082
    906030 8xdb:A (3.3) BS02 A1LYJ N/A N/A Q15849 39587082
    906031 8xdb:B (3.3) BS01 A1LYJ N/A N/A Q15849 39587082
    906032 8xdb:B (3.3) BS02 A1LYJ N/A N/A Q15849 39587082
    906033 8xdb:C (3.3) BS01 A1LYJ N/A N/A Q15849 39587082
    906034 8xdb:C (3.3) BS02 A1LYJ N/A N/A Q15849 39587082
    906035 8xdc:A (3.0) BS01 A1LVA N/A N/A Q15849 39587082
    906036 8xdc:B (3.0) BS01 A1LVA N/A N/A Q15849 39587082
    906037 8xdc:C (3.0) BS01 A1LVA N/A N/A Q15849 39587082
    906038 8xdd:A (3.0) BS01 8HC N/A N/A Q15849 39587082
    906039 8xdd:A (3.0) BS02 SZ4 N/A N/A Q15849 39587082
    906040 8xdd:B (3.0) BS01 8HC N/A N/A Q15849 39587082
    906041 8xdd:B (3.0) BS02 SZ4 N/A N/A Q15849 39587082
    906042 8xdd:C (3.0) BS01 8HC N/A N/A Q15849 39587082
    906043 8xdd:C (3.0) BS02 SZ4 N/A N/A Q15849 39587082
    906044 8xdh:A (3.1) BS01 URE N/A GO:0005886 ... Q533H0 39587082
    906045 8xdh:A (3.1) BS02 URE N/A GO:0005886 ... Q533H0 39587082
    906046 8xdh:B (3.1) BS01 URE N/A GO:0005886 ... Q533H0 39587082
    906047 8xdh:B (3.1) BS02 URE N/A GO:0005886 ... Q533H0 39587082
    906048 8xdh:C (3.1) BS01 URE N/A GO:0005886 ... Q533H0 39587082
    906049 8xdh:C (3.1) BS02 URE N/A GO:0005886 ... Q533H0 39587082
    906050 8xdi:A (3.1) BS01 A1LU9 N/A GO:0005886 ... Q533H0 39587082
    906051 8xdi:A (3.1) BS02 A1LU9 N/A GO:0005886 ... Q533H0 39587082
    906052 8xdi:B (3.1) BS01 A1LU9 N/A GO:0005886 ... Q533H0 39587082
    906053 8xdi:B (3.1) BS02 A1LU9 N/A GO:0005886 ... Q533H0 39587082
    906054 8xdi:C (3.1) BS01 A1LU9 N/A GO:0005886 ... Q533H0 39587082
    906055 8xdi:C (3.1) BS02 A1LU9 N/A GO:0005886 ... Q533H0 39587082
    906056 8xdj:A (1.65) BS01 AMP N/A N/A Q5ZRG2 N/A
    906057 8xdj:A (1.65) BS02 MG N/A N/A Q5ZRG2 N/A
    906058 8xdj:B (1.65) BS01 MG N/A N/A Q5ZRG2 N/A
    906059 8xdj:B (1.65) BS02 AMP N/A N/A Q5ZRG2 N/A
    906060 8xdj:C (1.65) BS01 AMP N/A N/A Q5ZRG2 N/A
    906061 8xdj:C (1.65) BS02 MG N/A N/A Q5ZRG2 N/A
    906062 8xdj:C (1.65) BS03 AMP N/A N/A Q5ZRG2 N/A
    906063 8xdj:D (1.65) BS01 AMP N/A N/A Q5ZRG2 N/A
    906064 8xdj:D (1.65) BS02 MG N/A N/A Q5ZRG2 N/A
    906065 8xdj:D (1.65) BS03 AMP N/A N/A Q5ZRG2 N/A
    906066 8xdl:A (2.44) BS01 ADP N/A GO:0000287 ... P68135 N/A
    906067 8xdl:B (2.44) BS01 ADP N/A GO:0000287 ... P68135 N/A
    906068 8xdl:C (2.44) BS01 ADP N/A GO:0000287 ... P68135 N/A
    906069 8xdm:A (2.45) BS01 ADP N/A GO:0000287 ... P68135 N/A
    906070 8xdm:B (2.45) BS01 ADP N/A GO:0000287 ... P68135 N/A
    906071 8xdm:C (2.45) BS01 ADP N/A GO:0000287 ... P68135 N/A
    906072 8xdo:A (1.37) BS01 MG N/A GO:0008168 ... A0A6B9TNK2 N/A
    906073 8xdo:A (1.37) BS02 SAH N/A GO:0008168 ... A0A6B9TNK2 N/A
    906074 8xdo:B (1.37) BS01 MG N/A GO:0008168 ... A0A6B9TNK2 N/A
    906075 8xdo:B (1.37) BS02 SAH N/A GO:0008168 ... A0A6B9TNK2 N/A
    906076 8xdp:A (1.75) BS01 MG N/A GO:0008168 ... A0A6B9TNK2 N/A
    906077 8xdp:A (1.75) BS02 SAH N/A GO:0008168 ... A0A6B9TNK2 N/A
    906078 8xdp:B (1.75) BS01 H6N N/A GO:0008168 ... A0A6B9TNK2 N/A
    906079 8xdp:B (1.75) BS02 MG N/A GO:0008168 ... A0A6B9TNK2 N/A
    906080 8xdp:B (1.75) BS03 SAH N/A GO:0008168 ... A0A6B9TNK2 N/A
    906081 8xdq:A (1.77) BS01 MG N/A GO:0008168 ... A0A6B9TNK2 N/A
    906082 8xdq:A (1.77) BS02 SAH N/A GO:0008168 ... A0A6B9TNK2 N/A
    906083 8xdq:B (1.77) BS01 MG N/A GO:0008168 ... A0A6B9TNK2 N/A
    906084 8xdq:B (1.77) BS02 SAH N/A GO:0008168 ... A0A6B9TNK2 N/A
    906085 8xdr:A (1.83) BS01 MG N/A GO:0008168 ... A0A6B9TNK2 N/A
    906086 8xdr:A (1.83) BS02 SAH N/A GO:0008168 ... A0A6B9TNK2 N/A
    906087 8xdr:B (1.83) BS01 MG N/A GO:0008168 ... A0A6B9TNK2 N/A
    906088 8xdr:B (1.83) BS02 SAH N/A GO:0008168 ... A0A6B9TNK2 N/A
    906089 8xdr:B (1.83) BS03 H6N N/A GO:0008168 ... A0A6B9TNK2 N/A
    906090 8xds:A (1.97) BS01 MG N/A GO:0008168 ... A0A6B9TNK2 N/A
    906091 8xds:A (1.97) BS02 SAH N/A GO:0008168 ... A0A6B9TNK2 N/A
    906092 8xds:B (1.97) BS01 MG N/A GO:0008168 ... A0A6B9TNK2 N/A
    906093 8xds:B (1.97) BS02 SAH N/A GO:0008168 ... A0A6B9TNK2 N/A
    906094 8xdt:A (2.65) BS01 MG N/A GO:0008168 ... A0A6B9TNK2 N/A
    906095 8xdt:A (2.65) BS02 SAH N/A GO:0008168 ... A0A6B9TNK2 N/A
    906096 8xdt:B (2.65) BS01 MG N/A GO:0008168 ... A0A6B9TNK2 N/A
    906097 8xdt:B (2.65) BS02 SAH N/A GO:0008168 ... A0A6B9TNK2 N/A
    906098 8xdu:A (1.92) BS01 MG N/A GO:0008168 ... A0A6B9TNK2 N/A
    906099 8xdu:A (1.92) BS02 SAH N/A GO:0008168 ... A0A6B9TNK2 N/A
    906100 8xdu:B (1.92) BS01 MG N/A GO:0008168 ... A0A6B9TNK2 N/A
    906101 8xdu:B (1.92) BS02 SAH N/A GO:0008168 ... A0A6B9TNK2 N/A
    906102 8xdv:A (2.32) BS01 MG N/A GO:0008168 ... A0A6B9TNK2 N/A
    906103 8xdv:A (2.32) BS02 SAH N/A GO:0008168 ... A0A6B9TNK2 N/A
    906104 8xdv:B (2.32) BS01 MG N/A GO:0008168 ... A0A6B9TNK2 N/A
    906105 8xdv:B (2.32) BS02 SAH N/A GO:0008168 ... A0A6B9TNK2 N/A
    906106 8xdy:A (2.2) BS01 MG N/A GO:0008168 ... A0A6B9TNK2 N/A
    906107 8xdy:A (2.2) BS02 SAH N/A GO:0008168 ... A0A6B9TNK2 N/A
    906108 8xdy:B (2.2) BS01 H6N N/A GO:0008168 ... A0A6B9TNK2 N/A
    906109 8xdy:B (2.2) BS02 MG N/A GO:0008168 ... A0A6B9TNK2 N/A
    906110 8xdy:B (2.2) BS03 SAH N/A GO:0008168 ... A0A6B9TNK2 N/A
    906111 8xe0:A (2.2) BS01 H6N N/A GO:0008168 ... A0A6B9TNK2 N/A
    906112 8xe0:A (2.2) BS02 MG N/A GO:0008168 ... A0A6B9TNK2 N/A
    906113 8xe0:A (2.2) BS03 SAH N/A GO:0008168 ... A0A6B9TNK2 N/A
    906114 8xe0:B (2.2) BS01 MG N/A GO:0008168 ... A0A6B9TNK2 N/A
    906115 8xe0:B (2.2) BS02 SAH N/A GO:0008168 ... A0A6B9TNK2 N/A
    906116 8xe2:A (2.43) BS01 MG N/A GO:0008168 ... A0A6B9TNK2 N/A
    906117 8xe2:A (2.43) BS02 SAH N/A GO:0008168 ... A0A6B9TNK2 N/A
    906118 8xe2:A (2.43) BS03 H6N N/A GO:0008168 ... A0A6B9TNK2 N/A
    906119 8xe2:B (2.43) BS01 MG N/A GO:0008168 ... A0A6B9TNK2 N/A
    906120 8xe2:B (2.43) BS02 SAH N/A GO:0008168 ... A0A6B9TNK2 N/A
    906121 8xe2:B (2.43) BS03 H6N N/A GO:0008168 ... A0A6B9TNK2 N/A
    906122 8xe2:C (2.43) BS01 MG N/A GO:0008168 ... A0A6B9TNK2 N/A
    906123 8xe2:C (2.43) BS02 SAH N/A GO:0008168 ... A0A6B9TNK2 N/A
    906124 8xe2:D (2.43) BS01 MG N/A GO:0008168 ... A0A6B9TNK2 N/A
    906125 8xe2:D (2.43) BS02 SAH N/A GO:0008168 ... A0A6B9TNK2 N/A
    906126 8xe3:A (1.72) BS01 MG N/A GO:0008168 ... A0A077EWA5 N/A
    906127 8xe3:A (1.72) BS02 SAH N/A GO:0008168 ... A0A077EWA5 N/A
    906128 8xe3:B (1.72) BS01 MG N/A GO:0008168 ... A0A077EWA5 N/A
    906129 8xe3:B (1.72) BS02 SAH N/A GO:0008168 ... A0A077EWA5 N/A
    906130 8xe4:A (1.96) BS01 MG N/A GO:0008168 ... A0A077EWA5 N/A
    906131 8xe4:A (1.96) BS02 SAH N/A GO:0008168 ... A0A077EWA5 N/A
    906132 8xe4:B (1.96) BS01 MG N/A GO:0008168 ... A0A077EWA5 N/A
    906133 8xe4:B (1.96) BS02 SAH N/A GO:0008168 ... A0A077EWA5 N/A
    906134 8xe4:C (1.96) BS01 A1LU2 N/A GO:0008168 ... A0A077EWA5 N/A
    906135 8xe4:C (1.96) BS02 MG N/A GO:0008168 ... A0A077EWA5 N/A
    906136 8xe4:C (1.96) BS03 SAH N/A GO:0008168 ... A0A077EWA5 N/A
    906137 8xe4:D (1.96) BS01 A1LU2 N/A GO:0008168 ... A0A077EWA5 N/A
    906138 8xe4:D (1.96) BS02 MG N/A GO:0008168 ... A0A077EWA5 N/A
    906139 8xe4:D (1.96) BS03 SAH N/A GO:0008168 ... A0A077EWA5 N/A
    906140 8xe5:A (2.07) BS01 MG N/A GO:0008168 ... A0A077EWA5 N/A
    906141 8xe5:A (2.07) BS02 SAH N/A GO:0008168 ... A0A077EWA5 N/A
    906142 8xe5:A (2.07) BS03 H6N N/A GO:0008168 ... A0A077EWA5 N/A
    906143 8xe5:B (2.07) BS01 MG N/A GO:0008168 ... A0A077EWA5 N/A
    906144 8xe5:B (2.07) BS02 SAH N/A GO:0008168 ... A0A077EWA5 N/A
    906145 8xe5:C (2.07) BS01 MG N/A GO:0008168 ... A0A077EWA5 N/A
    906146 8xe5:C (2.07) BS02 SAH N/A GO:0008168 ... A0A077EWA5 N/A
    906147 8xe5:C (2.07) BS03 H6N N/A GO:0008168 ... A0A077EWA5 N/A
    906148 8xe5:D (2.07) BS01 MG N/A GO:0008168 ... A0A077EWA5 N/A
    906149 8xe5:D (2.07) BS02 SAH N/A GO:0008168 ... A0A077EWA5 N/A
    906150 8xe7:A (1.95) BS01 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 38647411
    906151 8xee:A (3.03) BS01 SAH N/A N/A Q9UBC3 39290110
    906152 8xee:D (3.03) BS01 SAH N/A N/A Q9UBC3 39290110
    906153 8xej:X (3.66) BS01 DLP ? GO:0002513 ... Q9H6D3 38364890
    906154 8xem:A (1.8) BS01 MG N/A N/A Q5ZRG2 N/A
    906155 8xem:B (1.8) BS01 MG N/A N/A Q5ZRG2 N/A
    906156 8xem:C (1.8) BS01 MG N/A N/A Q5ZRG2 N/A
    906157 8xem:D (1.8) BS01 MG N/A N/A Q5ZRG2 N/A
    906158 8xer:A (3.0) BS01 A1LU4 N/A N/A P06756 N/A
    906159 8xer:B (3.0) BS01 A1LU4 N/A N/A P05106 N/A
    906160 8xes:A (1.78) BS01 peptide N/A N/A A0A0G2JPD3 38885041
    906161 8xet:A (1.11) BS01 ZN N/A GO:0030288 ... A0A5S4TPK8 39395422
    906162 8xet:A (1.11) BS02 ZN N/A GO:0030288 ... A0A5S4TPK8 39395422
    906163 8xeu:A (1.8) BS01 FCE N/A GO:0030288 ... A0A5S4TPK8 39395422
    906164 8xf0:C (2.5) BS01 MG N/A GO:0015979 ... N/A 38238241
    906165 8xf0:E (2.5) BS01 MG N/A GO:0015979 ... N/A 38238241
    906166 8xf0:F (2.5) BS01 MG N/A GO:0015979 ... N/A 38238241
    906167 8xf4:A (2.0) BS01 OX8 N/A GO:0030288 ... A0A5S4TPK8 39395422
    906168 8xf4:A (2.0) BS02 OX8 N/A GO:0030288 ... A0A5S4TPK8 39395422
    906169 8xf6:A (3.1) BS01 A1LU4 N/A N/A P06756 N/A
    906170 8xf6:B (3.1) BS01 A1LU4 N/A N/A P05106 N/A
    906171 8xf7:A (1.12) BS01 6L0 N/A GO:0030288 ... A0A5S4TPK8 39395422
    906172 8xf7:A (1.12) BS02 ZN N/A GO:0030288 ... A0A5S4TPK8 39395422
    906173 8xf7:A (1.12) BS03 ZN N/A GO:0030288 ... A0A5S4TPK8 39395422
    906174 8xf8:A (1.15) BS01 0UE N/A GO:0030288 ... A0A5S4TPK8 39395422
    906175 8xf9:A (1.15) BS01 ZN N/A GO:0030288 ... A0A5S4TPK8 39395422
    906176 8xf9:A (1.15) BS02 ZN N/A GO:0030288 ... A0A5S4TPK8 39395422
    906177 8xfa:A (1.85) BS01 6L0 N/A GO:0030288 ... A0A5S4TPK8 39395422
    906178 8xfc:D (3.89) BS01 ATP N/A GO:0000166 ... I6Y482 N/A
    906179 8xfc:D (3.89) BS02 ATP N/A GO:0000166 ... I6Y482 N/A
    906180 8xfd:A (2.1) BS01 MG 2.7.1.40 GO:0000287 ... P30613 N/A
    906181 8xfd:A (2.1) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 N/A
    906182 8xfd:A (2.1) BS03 WV2 2.7.1.40 GO:0000287 ... P30613 N/A
    906183 8xfd:B (2.1) BS01 MG 2.7.1.40 GO:0000287 ... P30613 N/A
    906184 8xfd:B (2.1) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 N/A
    906185 8xfd:B (2.1) BS03 WV2 2.7.1.40 GO:0000287 ... P30613 N/A
    906186 8xfd:C (2.1) BS01 MG 2.7.1.40 GO:0000287 ... P30613 N/A
    906187 8xfd:C (2.1) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 N/A
    906188 8xfd:C (2.1) BS03 WV2 2.7.1.40 GO:0000287 ... P30613 N/A
    906189 8xfd:D (2.1) BS01 MG 2.7.1.40 GO:0000287 ... P30613 N/A
    906190 8xfd:D (2.1) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 N/A
    906191 8xfd:D (2.1) BS03 WV2 2.7.1.40 GO:0000287 ... P30613 N/A
    906192 8xfg:A (2.8) BS01 A1LU7 N/A N/A P06756 N/A
    906193 8xfg:B (2.8) BS01 A1LU7 N/A N/A P05106 N/A
    906194 8xfh:A (2.8) BS01 UDP N/A GO:0016757 ... A0A0M4KE44 N/A
    906195 8xfh:B (2.8) BS01 UDP N/A GO:0016757 ... A0A0M4KE44 N/A
    906196 8xfi:A (1.95) BS01 6L0 N/A GO:0030288 ... A0A5S4TPK8 39395422
    906197 8xfi:B (1.95) BS01 6L0 N/A GO:0030288 ... A0A5S4TPK8 39395422
    906198 8xfm:A (2.6) BS01 A1LU6 2.7.11.1 GO:0004672 ... Q9HBH9 N/A
    906199 8xfm:A (2.6) BS02 ZN 2.7.11.1 GO:0004672 ... Q9HBH9 N/A
    906200 8xfo:A (3.0) BS01 A1LU7 N/A N/A P06756 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).