SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    906401 8xgy:H (2.81) BS03 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    906402 8xgy:I (2.81) BS01 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    906403 8xgy:I (2.81) BS02 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    906404 8xgy:I (2.81) BS03 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    906405 8xgy:J (2.81) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    906406 8xgy:J (2.81) BS02 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    906407 8xgy:K (2.81) BS01 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    906408 8xgy:K (2.81) BS02 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    906409 8xgy:K (2.81) BS03 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    906410 8xgy:L (2.81) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    906411 8xgy:L (2.81) BS02 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    906412 8xgz:A (2.44) BS01 A3P N/A N/A A0A2P4SYK2 N/A
    906413 8xha:A (2.27) BS01 PGU 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    906414 8xha:A (2.27) BS02 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    906415 8xha:B (2.27) BS01 PGU 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    906416 8xha:B (2.27) BS02 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    906417 8xhd:A (2.7) BS01 PGU 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    906418 8xhd:A (2.7) BS02 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    906419 8xhd:B (2.7) BS01 PGU 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    906420 8xhd:B (2.7) BS02 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    906421 8xhe:A (2.64) BS01 SIA N/A GO:0016020 ... Q67333 39562538
    906422 8xhe:B (2.64) BS01 SIA N/A GO:0016020 ... Q67333 39562538
    906423 8xhe:C (2.64) BS01 SIA N/A GO:0016020 ... Q67333 39562538
    906424 8xhg:A (2.54) BS01 SIA N/A GO:0016020 ... Q67333 39562538
    906425 8xhg:B (2.54) BS01 SIA N/A GO:0016020 ... Q67333 39562538
    906426 8xhg:C (2.54) BS01 SIA N/A GO:0016020 ... Q67333 39562538
    906427 8xhj:A (2.187) BS01 CO N/A GO:0003868 ... P93836 N/A
    906428 8xhj:A (2.187) BS02 HBA N/A GO:0003868 ... P93836 N/A
    906429 8xhk:A (2.79) BS01 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    906430 8xhk:A (2.79) BS02 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    906431 8xhk:B (2.79) BS01 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    906432 8xhk:B (2.79) BS02 PLR 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    906433 8xhk:C (2.79) BS01 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    906434 8xhk:C (2.79) BS02 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    906435 8xhk:D (2.79) BS01 PLR 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    906436 8xhk:D (2.79) BS02 PLR 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    906437 8xhk:E (2.79) BS01 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    906438 8xhk:E (2.79) BS02 PLR 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    906439 8xhk:F (2.79) BS01 PLR 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    906440 8xhk:F (2.79) BS02 PLR 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    906441 8xhm:A (2.12) BS01 UMP N/A GO:0000287 ... A0A0B8NBT7 39390714
    906442 8xho:A (2.5) BS01 CA 3.1.1.101
    3.1.1.74
    GO:0016787 ... A0A1T4KK94 N/A
    906443 8xho:B (2.5) BS01 CA 3.1.1.101
    3.1.1.74
    GO:0016787 ... A0A1T4KK94 N/A
    906444 8xho:B (2.5) BS02 CA 3.1.1.101
    3.1.1.74
    GO:0016787 ... A0A1T4KK94 N/A
    906445 8xhr:A (2.1) BS01 CTP ? GO:0000166 ... P96356 38485701
    906446 8xhr:B (2.1) BS01 CTP ? GO:0000166 ... P96356 38485701
    906447 8xhr:C (2.1) BS01 CTP ? GO:0000166 ... P96356 38485701
    906448 8xhu:A (2.4) BS01 ZN 2.7.7.60
    4.6.1.12
    GO:0003824 ... O25664 38537721
    906449 8xhu:B (2.4) BS01 ZN 2.7.7.60
    4.6.1.12
    GO:0003824 ... O25664 38537721
    906450 8xhu:C (2.4) BS01 ZN 2.7.7.60
    4.6.1.12
    GO:0003824 ... O25664 38537721
    906451 8xhv:A (2.81) BS01 rna N/A N/A N/A 39315697
    906452 8xhw:A (2.94) BS01 RET N/A GO:0005886 ... Q18DH5 N/A
    906453 8xhw:B (2.94) BS01 RET N/A GO:0005886 ... Q18DH5 N/A
    906454 8xhw:C (2.94) BS01 RET N/A GO:0005886 ... Q18DH5 N/A
    906455 8xhw:D (2.94) BS01 RET N/A GO:0005886 ... Q18DH5 N/A
    906456 8xi2:A (2.6) BS01 rna N/A GO:0000244 ... A0A2K3E5Q8 39415054
    906457 8xi2:A (2.6) BS02 rna N/A GO:0000244 ... A0A2K3E5Q8 39415054
    906458 8xi2:A (2.6) BS03 rna N/A GO:0000244 ... A0A2K3E5Q8 39415054
    906459 8xi2:A (2.6) BS04 peptide N/A GO:0000244 ... A0A2K3E5Q8 39415054
    906460 8xi2:A (2.6) BS05 rna N/A GO:0000244 ... A0A2K3E5Q8 39415054
    906461 8xi2:A (2.6) BS06 rna N/A GO:0000244 ... A0A2K3E5Q8 39415054
    906462 8xi2:C (2.6) BS01 GTP N/A GO:0000398 ... A8JCA8 39415054
    906463 8xi2:C (2.6) BS02 MG N/A GO:0000398 ... A8JCA8 39415054
    906464 8xi2:I (2.6) BS01 rna N/A GO:0000349 ... A0A2K3D3K4 39415054
    906465 8xi2:J (2.6) BS01 rna N/A GO:0000245 ... A0A2K3CXZ4 39415054
    906466 8xi2:L (2.6) BS01 rna N/A GO:0000398 ... A0A2K3DYR4 39415054
    906467 8xi2:M (2.6) BS01 rna N/A GO:0003755 ... A0A2K3E769 39415054
    906468 8xi2:M (2.6) BS02 rna N/A GO:0003755 ... A0A2K3E769 39415054
    906469 8xi2:N (2.6) BS01 rna N/A GO:0000398 ... A0A2K3DAL7 39415054
    906470 8xi2:N (2.6) BS02 ZN N/A GO:0000398 ... A0A2K3DAL7 39415054
    906471 8xi2:O (2.6) BS01 rna N/A GO:0000974 ... A0A2K3E050 39415054
    906472 8xi2:O (2.6) BS02 rna N/A GO:0000974 ... A0A2K3E050 39415054
    906473 8xi2:O (2.6) BS03 ZN N/A GO:0000974 ... A0A2K3E050 39415054
    906474 8xi2:O (2.6) BS04 ZN N/A GO:0000974 ... A0A2K3E050 39415054
    906475 8xi2:P (2.6) BS01 rna N/A GO:0003723 ... A0A2K3CN43 39415054
    906476 8xi2:P (2.6) BS02 rna N/A GO:0003723 ... A0A2K3CN43 39415054
    906477 8xi2:R (2.6) BS01 rna N/A N/A A0A2K3E831 39415054
    906478 8xi2:R (2.6) BS02 rna N/A N/A A0A2K3E831 39415054
    906479 8xi2:T (2.6) BS01 rna N/A GO:0000398 ... A0A2K3DAW8 39415054
    906480 8xi2:V (2.6) BS01 peptide N/A GO:0000398 ... A0A2K3DML4 39415054
    906481 8xi2:W (2.6) BS01 rna N/A GO:0000398 ... A0A2K3DUN6 39415054
    906482 8xi2:a (2.6) BS01 rna N/A GO:0000243 ... A8I0E2 39415054
    906483 8xi2:b (2.6) BS01 rna N/A GO:0000398 ... A0A2K3CX88 39415054
    906484 8xi2:c (2.6) BS01 rna N/A GO:0000243 ... A0A2K3CTT9 39415054
    906485 8xi2:d (2.6) BS01 rna N/A GO:0000387 ... A8I074 39415054
    906486 8xi2:e (2.6) BS01 rna N/A GO:0000387 ... A8IYZ2 39415054
    906487 8xi2:f (2.6) BS01 rna N/A GO:0000398 ... A8J834 39415054
    906488 8xi2:g (2.6) BS01 rna N/A GO:0000387 ... A8HRS8 39415054
    906489 8xi4:M (3.4) BS01 CA N/A N/A P98155 39127734
    906490 8xi4:M (3.4) BS02 CA N/A N/A P98155 39127734
    906491 8xi4:N (3.4) BS01 CA N/A N/A P98155 39127734
    906492 8xi4:N (3.4) BS02 CA N/A N/A P98155 39127734
    906493 8xi4:O (3.4) BS01 CA N/A N/A P98155 39127734
    906494 8xi4:O (3.4) BS02 CA N/A N/A P98155 39127734
    906495 8xi4:P (3.4) BS01 CA N/A N/A P98155 39127734
    906496 8xi4:P (3.4) BS02 CA N/A N/A P98155 39127734
    906497 8xi5:M (3.4) BS01 CA N/A N/A P98155 39127734
    906498 8xi5:N (3.4) BS01 CA N/A N/A P98155 39127734
    906499 8xi5:O (3.4) BS01 CA N/A N/A P98155 39127734
    906500 8xi5:P (3.4) BS01 CA N/A N/A P98155 39127734
    906501 8xi5:Q (3.4) BS01 CA N/A N/A P98155 39127734
    906502 8xi5:R (3.4) BS01 CA N/A N/A P98155 39127734
    906503 8xi5:S (3.4) BS01 CA N/A N/A P98155 39127734
    906504 8xi5:T (3.4) BS01 CA N/A N/A P98155 39127734
    906505 8xi9:A (1.85) BS01 RAP N/A GO:0003007 ... P42345
    P62942
    39031920
    906506 8xia:A (1.9) BS01 XLS 5.3.1.5 GO:0000287 ... P24300 2734296
    906507 8xia:A (1.9) BS02 MN 5.3.1.5 GO:0000287 ... P24300 2734296
    906508 8xia:A (1.9) BS03 MN 5.3.1.5 GO:0000287 ... P24300 2734296
    906509 8xib:A (2.097) BS01 CO N/A N/A P93836 N/A
    906510 8xib:A (2.097) BS02 OHP N/A N/A P93836 N/A
    906511 8xif:A (1.39) BS01 MG 3.6.4.- N/A P04305 38914567
    906512 8xif:A (1.39) BS02 MG 3.6.4.- N/A P04305 38914567
    906513 8xig:A (1.65) BS01 MG 3.6.4.- N/A A0A7H0DN89 38914567
    906514 8xig:A (1.65) BS02 MG 3.6.4.- N/A A0A7H0DN89 38914567
    906515 8xih:A (3.2) BS01 dna N/A N/A H1YCU5 N/A
    906516 8xih:A (3.2) BS02 dna N/A N/A H1YCU5 N/A
    906517 8xih:B (3.2) BS01 dna N/A N/A H1YCU5 N/A
    906518 8xih:B (3.2) BS02 dna N/A N/A H1YCU5 N/A
    906519 8xii:A (1.596) BS01 CO N/A N/A P93836 N/A
    906520 8xii:A (1.596) BS02 A1LVP N/A N/A P93836 N/A
    906521 8xij:A (3.37) BS01 PKZ N/A GO:0005783 ... P47026 39448635
    906522 8xik:A (3.55) BS01 A1LVI N/A GO:0005783 ... P47026 39448635
    906523 8xil:A (1.21) BS01 BGC N/A N/A Q93HT8 N/A
    906524 8xil:A (1.21) BS02 BGC N/A N/A Q93HT8 N/A
    906525 8xil:A (1.21) BS03 BGC N/A N/A Q93HT8 N/A
    906526 8xil:B (1.21) BS01 BGC N/A N/A Q93HT8 N/A
    906527 8xil:B (1.21) BS02 BGC N/A N/A Q93HT8 N/A
    906528 8xil:B (1.21) BS03 BGC N/A N/A Q93HT8 N/A
    906529 8xim:A (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    906530 8xim:A (2.4) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    906531 8xim:B (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    906532 8xim:B (2.4) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    906533 8xim:C (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    906534 8xim:C (2.4) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    906535 8xim:D (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    906536 8xim:D (2.4) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    906537 8xin:A (1.694) BS01 CO N/A N/A P93836 N/A
    906538 8xin:A (1.694) BS02 A1LVO N/A N/A P93836 N/A
    906539 8xio:A (2.65) BS01 A1D5D N/A GO:0004930 ... P30872 39361640
    906540 8xip:A (3.29) BS01 peptide N/A GO:0004930 ... P30872 39361640
    906541 8xiq:A (2.71) BS01 peptide N/A GO:0004930 ... P32745 39361640
    906542 8xir:A (2.52) BS01 peptide N/A GO:0004930 ... P32745 39361640
    906543 8xiv:A (1.6) BS01 FUD N/A N/A A0A1N7MFN7 N/A
    906544 8xiv:A (1.6) BS02 CO N/A N/A A0A1N7MFN7 N/A
    906545 8xiy:A (2.09) BS01 PLP ? GO:0003824 ... Q0C8G1 N/A
    906546 8xiy:B (2.09) BS01 PLP ? GO:0003824 ... Q0C8G1 N/A
    906547 8xj2:A (3.16) BS01 A1LVL N/A N/A P31153 N/A
    906548 8xj2:A (3.16) BS02 A1LVL N/A N/A P31153 N/A
    906549 8xj2:A (3.16) BS03 SAM N/A N/A P31153 N/A
    906550 8xj2:B (3.16) BS01 A1LVL N/A N/A P31153 N/A
    906551 8xj2:B (3.16) BS02 A1LVL N/A N/A P31153 N/A
    906552 8xj2:B (3.16) BS03 SAM N/A N/A P31153 N/A
    906553 8xj2:C (3.16) BS01 A1LVL N/A N/A P31153 N/A
    906554 8xj2:C (3.16) BS02 SAM N/A N/A P31153 N/A
    906555 8xj2:C (3.16) BS03 A1LVL N/A N/A P31153 N/A
    906556 8xj2:D (3.16) BS01 A1LVL N/A N/A P31153 N/A
    906557 8xj2:D (3.16) BS02 SAM N/A N/A P31153 N/A
    906558 8xj2:D (3.16) BS03 A1LVL N/A N/A P31153 N/A
    906559 8xj5:A (2.04) BS01 ORN N/A N/A Q9ZV05 N/A
    906560 8xj5:A (2.04) BS02 COA N/A N/A Q9ZV05 N/A
    906561 8xj5:A (2.04) BS03 ORN N/A N/A Q9ZV05 N/A
    906562 8xj5:Q (2.04) BS01 ORN N/A N/A Q9ZV05 N/A
    906563 8xj5:Q (2.04) BS02 ORN N/A N/A Q9ZV05 N/A
    906564 8xj5:Q (2.04) BS03 COA N/A N/A Q9ZV05 N/A
    906565 8xj6:A (3.32) BS01 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    906566 8xj6:B (3.32) BS01 AN2 ? GO:0004386 ... A0A7H0DN89 38914567
    906567 8xj6:C (3.32) BS01 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    906568 8xj6:D (3.32) BS01 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    906569 8xj6:E (3.32) BS01 AN2 ? GO:0004386 ... A0A7H0DN89 38914567
    906570 8xj6:E (3.32) BS02 ZN ? GO:0004386 ... A0A7H0DN89 38914567
    906571 8xj6:F (3.32) BS01 AN2 ? GO:0004386 ... A0A7H0DN89 38914567
    906572 8xj6:F (3.32) BS02 ZN ? GO:0004386 ... A0A7H0DN89 38914567
    906573 8xj7:A (2.74) BS01 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    906574 8xj7:B (2.74) BS01 dna ? GO:0004386 ... A0A7H0DN89 38914567
    906575 8xj7:B (2.74) BS02 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    906576 8xj7:B (2.74) BS03 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    906577 8xj7:C (2.74) BS01 dna ? GO:0004386 ... A0A7H0DN89 38914567
    906578 8xj7:C (2.74) BS02 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    906579 8xj7:C (2.74) BS03 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    906580 8xj7:D (2.74) BS01 dna ? GO:0004386 ... A0A7H0DN89 38914567
    906581 8xj7:D (2.74) BS02 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    906582 8xj7:D (2.74) BS03 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    906583 8xj7:E (2.74) BS01 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    906584 8xj7:E (2.74) BS02 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    906585 8xj7:F (2.74) BS01 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    906586 8xj8:A (2.67) BS01 dna 3.6.4.- N/A A0A7H0DN89 38914567
    906587 8xj8:A (2.67) BS02 ANP 3.6.4.- N/A A0A7H0DN89 38914567
    906588 8xj8:B (2.67) BS01 dna 3.6.4.- N/A A0A7H0DN89 38914567
    906589 8xj8:B (2.67) BS02 ANP 3.6.4.- N/A A0A7H0DN89 38914567
    906590 8xj8:C (2.67) BS01 dna 3.6.4.- N/A A0A7H0DN89 38914567
    906591 8xj8:C (2.67) BS02 ANP 3.6.4.- N/A A0A7H0DN89 38914567
    906592 8xj8:C (2.67) BS03 ANP 3.6.4.- N/A A0A7H0DN89 38914567
    906593 8xj8:D (2.67) BS01 dna 3.6.4.- N/A A0A7H0DN89 38914567
    906594 8xj8:D (2.67) BS02 ANP 3.6.4.- N/A A0A7H0DN89 38914567
    906595 8xjf:A (2.0) BS01 ACO N/A N/A Q9ZV06 N/A
    906596 8xjg:A (1.7) BS01 ZN N/A GO:0016884 ... A0A072FVI7 38211535
    906597 8xjg:A (1.7) BS02 ZN N/A GO:0016884 ... A0A072FVI7 38211535
    906598 8xjh:A (1.75) BS01 5NG N/A N/A Q9ZV06 N/A
    906599 8xjh:A (1.75) BS02 5NG N/A N/A Q9ZV06 N/A
    906600 8xjh:B (1.75) BS01 5NG N/A N/A Q9ZV06 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).