SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    906601 8w2o:C (3.49) BS01 rna ? GO:0000395 ... P32605 38688558
    906602 8w2o:D (3.49) BS01 rna ? GO:0000243 ... Q03776 38688558
    906603 8w2o:G (3.49) BS01 rna ? GO:0000243 ... Q03782 38688558
    906604 8w2o:K (3.49) BS01 rna ? GO:0000245 ... P40018 38688558
    906605 8w2o:L (3.49) BS01 rna ? GO:0000243 ... Q02260 38688558
    906606 8w2o:M (3.49) BS01 peptide ? GO:0000245 ... Q06217 38688558
    906607 8w2o:M (3.49) BS02 rna ? GO:0000245 ... Q06217 38688558
    906608 8w2o:N (3.49) BS01 rna ? GO:0000243 ... P43321 38688558
    906609 8w2o:O (3.49) BS01 peptide ? GO:0000245 ... Q12330 38688558
    906610 8w2o:O (3.49) BS02 rna ? GO:0000245 ... Q12330 38688558
    906611 8w2o:P (3.49) BS01 rna ? GO:0000245 ... P54999 38688558
    906612 8w2o:Q (3.49) BS01 peptide ? GO:0000245 ... P40204 38688558
    906613 8w2o:Q (3.49) BS02 rna ? GO:0000245 ... P40204 38688558
    906614 8w2p:A (3.14) BS01 dna N/A GO:0003676 ... A0AA91YUR9 N/A
    906615 8w2p:A (3.14) BS02 dna N/A GO:0003676 ... A0AA91YUR9 N/A
    906616 8w2p:A (3.14) BS03 SAM N/A GO:0003676 ... A0AA91YUR9 N/A
    906617 8w2p:A (3.14) BS04 CA N/A GO:0003676 ... A0AA91YUR9 N/A
    906618 8w2p:A (3.14) BS05 SAH N/A GO:0003676 ... A0AA91YUR9 N/A
    906619 8w2p:B (3.14) BS01 dna N/A GO:0003676 ... A0AA91YUR9 N/A
    906620 8w2p:B (3.14) BS02 dna N/A GO:0003676 ... A0AA91YUR9 N/A
    906621 8w2p:B (3.14) BS03 SAH N/A GO:0003676 ... A0AA91YUR9 N/A
    906622 8w2p:C (3.14) BS01 dna N/A GO:0003677 ... A0A226QBA7 N/A
    906623 8w2p:C (3.14) BS02 dna N/A GO:0003677 ... A0A226QBA7 N/A
    906624 8w2q:A (3.06) BS01 dna N/A GO:0003676 ... N/A N/A
    906625 8w2q:A (3.06) BS02 dna N/A GO:0003676 ... N/A N/A
    906626 8w2q:A (3.06) BS03 SAH N/A GO:0003676 ... N/A N/A
    906627 8w2q:B (3.06) BS01 dna N/A GO:0003676 ... N/A N/A
    906628 8w2q:B (3.06) BS02 dna N/A GO:0003676 ... N/A N/A
    906629 8w2q:B (3.06) BS03 SAH N/A GO:0003676 ... N/A N/A
    906630 8w2q:B (3.06) BS04 SAM N/A GO:0003676 ... N/A N/A
    906631 8w2q:C (3.06) BS01 dna N/A GO:0003677 ... A0A226QBA7 N/A
    906632 8w2q:C (3.06) BS02 dna N/A GO:0003677 ... A0A226QBA7 N/A
    906633 8w2r:A (3.23) BS01 dna ? GO:0003676 ... P12497 38582148
    906634 8w2r:A (3.23) BS02 dna ? GO:0003676 ... P12497 38582148
    906635 8w2r:A (3.23) BS03 dna ? GO:0003676 ... P12497 38582148
    906636 8w2r:A (3.23) BS04 dna ? GO:0003676 ... P12497 38582148
    906637 8w2r:A (3.23) BS05 MG ? GO:0003676 ... P12497 38582148
    906638 8w2r:A (3.23) BS06 MG ? GO:0003676 ... P12497 38582148
    906639 8w2r:A (3.23) BS07 ZN ? GO:0003676 ... P12497 38582148
    906640 8w2r:A (3.23) BS08 DLU ? GO:0003676 ... P12497 38582148
    906641 8w2r:C (3.23) BS01 dna ? GO:0003676 ... P12497 38582148
    906642 8w2r:D (3.23) BS01 dna ? GO:0003676 ... P12497 38582148
    906643 8w2r:D (3.23) BS02 dna ? GO:0003676 ... P12497 38582148
    906644 8w2r:I (3.23) BS01 dna ? GO:0003676 ... P12497 38582148
    906645 8w2r:I (3.23) BS02 dna ? GO:0003676 ... P12497 38582148
    906646 8w2r:I (3.23) BS03 dna ? GO:0003676 ... P12497 38582148
    906647 8w2r:I (3.23) BS04 dna ? GO:0003676 ... P12497 38582148
    906648 8w2r:I (3.23) BS05 MG ? GO:0003676 ... P12497 38582148
    906649 8w2r:I (3.23) BS06 MG ? GO:0003676 ... P12497 38582148
    906650 8w2r:I (3.23) BS07 ZN ? GO:0003676 ... P12497 38582148
    906651 8w2r:I (3.23) BS08 DLU ? GO:0003676 ... P12497 38582148
    906652 8w2r:L (3.23) BS01 dna ? GO:0003676 ... P12497 38582148
    906653 8w2r:M (3.23) BS01 dna ? GO:0003676 ... P12497 38582148
    906654 8w2r:M (3.23) BS02 dna ? GO:0003676 ... P12497 38582148
    906655 8w2s:A (3.4) BS01 rna N/A GO:0003676 ... N/A 39774105
    906656 8w2t:D (2.52) BS01 ZN N/A GO:0003950 ... Q9H2K2 40093088
    906657 8w2t:Q (2.52) BS01 ZN N/A GO:0003950 ... Q9H2K2 40093088
    906658 8w2u:A (2.46) BS01 ZN N/A GO:0003950 ... Q9H2K2 40093088
    906659 8w2u:B (2.46) BS01 ZN N/A GO:0003950 ... Q9H2K2 40093088
    906660 8w2u:C (2.46) BS01 ZN N/A GO:0003950 ... Q9H2K2 40093088
    906661 8w2u:D (2.46) BS01 ZN N/A GO:0003950 ... Q9H2K2 40093088
    906662 8w2u:E (2.46) BS01 ZN N/A GO:0003950 ... Q9H2K2 40093088
    906663 8w2u:F (2.46) BS01 ZN N/A GO:0003950 ... Q9H2K2 40093088
    906664 8w2u:G (2.46) BS01 ZN N/A GO:0003950 ... Q9H2K2 40093088
    906665 8w2u:H (2.46) BS01 ZN N/A GO:0003950 ... Q9H2K2 40093088
    906666 8w2u:I (2.46) BS01 ZN N/A GO:0003950 ... Q9H2K2 40093088
    906667 8w2u:J (2.46) BS01 ZN N/A GO:0003950 ... Q9H2K2 40093088
    906668 8w2u:L (2.46) BS01 ZN N/A GO:0003950 ... Q9H2K2 40093088
    906669 8w2u:M (2.46) BS01 ZN N/A GO:0003950 ... Q9H2K2 40093088
    906670 8w2u:N (2.46) BS01 ZN N/A GO:0003950 ... Q9H2K2 40093088
    906671 8w2u:O (2.46) BS01 ZN N/A GO:0003950 ... Q9H2K2 40093088
    906672 8w2u:P (2.46) BS01 ZN N/A GO:0003950 ... Q9H2K2 40093088
    906673 8w2u:Q (2.46) BS01 ZN N/A GO:0003950 ... Q9H2K2 40093088
    906674 8w2u:R (2.46) BS01 ZN N/A GO:0003950 ... Q9H2K2 40093088
    906675 8w2u:S (2.46) BS01 ZN N/A GO:0003950 ... Q9H2K2 40093088
    906676 8w2u:T (2.46) BS01 ZN N/A GO:0003950 ... Q9H2K2 40093088
    906677 8w2u:U (2.46) BS01 ZN N/A GO:0003950 ... Q9H2K2 40093088
    906678 8w2x:A (2.98) BS01 A1AFR N/A GO:0004672 ... P21802 39706336
    906679 8w2x:B (2.98) BS01 A1AFR N/A GO:0004672 ... P21802 39706336
    906680 8w2z:A (3.37) BS01 rna N/A GO:0003676 ... A0ACD6BA15 39774105
    906681 8w2z:A (3.37) BS02 dna N/A GO:0003676 ... A0ACD6BA15 39774105
    906682 8w2z:A (3.37) BS03 dna N/A GO:0003676 ... A0ACD6BA15 39774105
    906683 8w30:A (2.45) BS01 CA N/A GO:0007155 ... P06756 38872300
    906684 8w30:A (2.45) BS02 CA N/A GO:0007155 ... P06756 38872300
    906685 8w30:A (2.45) BS03 CA N/A GO:0007155 ... P06756 38872300
    906686 8w30:A (2.45) BS04 CA N/A GO:0007155 ... P06756 38872300
    906687 8w30:B (2.45) BS01 CA N/A N/A P05556 38872300
    906688 8w30:B (2.45) BS02 CA N/A N/A P05556 38872300
    906689 8w30:B (2.45) BS03 A1AFA N/A N/A P05556 38872300
    906690 8w31:A (2.5) BS01 ZN N/A GO:0004842 ... Q9JK66 39300082
    906691 8w31:A (2.5) BS02 ZN N/A GO:0004842 ... Q9JK66 39300082
    906692 8w31:A (2.5) BS03 ZN N/A GO:0004842 ... Q9JK66 39300082
    906693 8w31:A (2.5) BS04 ZN N/A GO:0004842 ... Q9JK66 39300082
    906694 8w31:A (2.5) BS05 ZN N/A GO:0004842 ... Q9JK66 39300082
    906695 8w31:A (2.5) BS06 ZN N/A GO:0004842 ... Q9JK66 39300082
    906696 8w31:A (2.5) BS07 A1AE9 N/A GO:0004842 ... Q9JK66 39300082
    906697 8w31:C (2.5) BS01 A1AE9 N/A N/A P0CG47 39300082
    906698 8w34:A (2.83) BS01 dna ? GO:0003676 ... P12497 38582148
    906699 8w34:A (2.83) BS02 dna ? GO:0003676 ... P12497 38582148
    906700 8w34:A (2.83) BS03 dna ? GO:0003676 ... P12497 38582148
    906701 8w34:A (2.83) BS04 ZN ? GO:0003676 ... P12497 38582148
    906702 8w34:A (2.83) BS05 DLU ? GO:0003676 ... P12497 38582148
    906703 8w34:A (2.83) BS06 MG ? GO:0003676 ... P12497 38582148
    906704 8w34:A (2.83) BS07 MG ? GO:0003676 ... P12497 38582148
    906705 8w34:C (2.83) BS01 dna ? GO:0003676 ... P12497 38582148
    906706 8w34:D (2.83) BS01 dna ? GO:0003676 ... P12497 38582148
    906707 8w34:D (2.83) BS02 dna ? GO:0003676 ... P12497 38582148
    906708 8w34:I (2.83) BS01 dna ? GO:0003676 ... P12497 38582148
    906709 8w34:I (2.83) BS02 dna ? GO:0003676 ... P12497 38582148
    906710 8w34:I (2.83) BS03 dna ? GO:0003676 ... P12497 38582148
    906711 8w34:I (2.83) BS04 ZN ? GO:0003676 ... P12497 38582148
    906712 8w34:I (2.83) BS05 DLU ? GO:0003676 ... P12497 38582148
    906713 8w34:I (2.83) BS06 MG ? GO:0003676 ... P12497 38582148
    906714 8w34:I (2.83) BS07 MG ? GO:0003676 ... P12497 38582148
    906715 8w34:L (2.83) BS01 dna ? GO:0003676 ... P12497 38582148
    906716 8w34:M (2.83) BS01 dna ? GO:0003676 ... P12497 38582148
    906717 8w34:M (2.83) BS02 dna ? GO:0003676 ... P12497 38582148
    906718 8w35:A (2.61) BS01 rna N/A GO:0003677 ... H9C180 38987591
    906719 8w35:B (2.61) BS01 rna N/A GO:0003677 ... H9C180 38987591
    906720 8w36:A (2.27) BS01 ADP N/A GO:0000287 ... P68135 N/A
    906721 8w36:B (2.27) BS01 ADP N/A GO:0000287 ... P68135 N/A
    906722 8w36:C (2.27) BS01 ADP N/A GO:0000287 ... P68135 N/A
    906723 8w36:D (2.27) BS01 ADP N/A GO:0000287 ... P68135 N/A
    906724 8w36:E (2.27) BS01 ADP N/A GO:0000287 ... P68135 N/A
    906725 8w38:A (2.6) BS01 TZ0 N/A GO:0004672 ... P21802 39706336
    906726 8w38:B (2.6) BS01 TZ0 N/A GO:0004672 ... P21802 39706336
    906727 8w38:C (2.6) BS01 TZ0 N/A GO:0004672 ... P21802 39706336
    906728 8w38:D (2.6) BS01 TZ0 N/A GO:0004672 ... P21802 39706336
    906729 8w39:A (2.1) BS01 A1AFF N/A GO:0000976 ... Q9L8G8 41615159
    906730 8w39:B (2.1) BS01 A1AFF N/A GO:0000976 ... Q9L8G8 41615159
    906731 8w3a:A (1.8) BS01 HEM ? GO:0015671 ... A9DF82 38959524
    906732 8w3a:A (1.8) BS02 A1ADT ? GO:0015671 ... A9DF82 38959524
    906733 8w3a:B (1.8) BS01 A1ADT ? GO:0015671 ... A9DF82 38959524
    906734 8w3a:B (1.8) BS02 HEM ? GO:0015671 ... A9DF82 38959524
    906735 8w3a:C (1.8) BS01 A1ADT ? GO:0015671 ... A9DF82 38959524
    906736 8w3a:C (1.8) BS02 HEM ? GO:0015671 ... A9DF82 38959524
    906737 8w3a:D (1.8) BS01 A1ADT ? GO:0015671 ... A9DF82 38959524
    906738 8w3a:D (1.8) BS02 HEM ? GO:0015671 ... A9DF82 38959524
    906739 8w3b:A (2.23) BS01 TZ0 N/A GO:0004672 ... P21802 39706336
    906740 8w3b:B (2.23) BS01 TZ0 N/A GO:0004672 ... P21802 39706336
    906741 8w3b:C (2.23) BS01 TZ0 N/A GO:0004672 ... P21802 39706336
    906742 8w3b:D (2.23) BS01 TZ0 N/A GO:0004672 ... P21802 39706336
    906743 8w3c:A (1.97) BS01 AG7 N/A GO:0004197 ... A1E4A3 39861864
    906744 8w3d:A (2.04) BS01 TZ0 N/A GO:0004672 ... P21802 39706336
    906745 8w3d:B (2.04) BS01 TZ0 N/A GO:0004672 ... P21802 39706336
    906746 8w3d:C (2.04) BS01 TZ0 N/A GO:0004672 ... P21802 39706336
    906747 8w3d:D (2.04) BS01 TZ0 N/A GO:0004672 ... P21802 39706336
    906748 8w3m:A (1.97) BS01 XNV N/A GO:0004197 ... A1E4A3 39861864
    906749 8w3t:A (1.98) BS01 UED N/A GO:0004197 ... A1E4A3 39861864
    906750 8w3u:A (2.0) BS01 UDP N/A N/A O26473 40903920
    906751 8w3u:A (2.0) BS02 NAD N/A N/A O26473 40903920
    906752 8w3u:A (2.0) BS03 MG N/A N/A O26473 40903920
    906753 8w3u:B (2.0) BS01 UDP N/A N/A O26473 40903920
    906754 8w3u:B (2.0) BS02 NAD N/A N/A O26473 40903920
    906755 8w3u:B (2.0) BS03 MG N/A N/A O26473 40903920
    906756 8w3w:A (1.976) BS01 A1AFO 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    906757 8w3w:B (1.976) BS01 A1AFO 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    906758 8w3w:C (1.976) BS01 A1AFO 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    906759 8w3w:D (1.976) BS01 A1AFO 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    906760 8w3x:A (1.765) BS01 A1AFH 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    906761 8w3x:B (1.765) BS01 A1AFH 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    906762 8w3x:C (1.765) BS01 A1AFH 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    906763 8w3x:D (1.765) BS01 A1AFH 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    906764 8w3z:A (1.49) BS01 MG N/A GO:0000162 ... Q06121 N/A
    906765 8w40:A (1.45) BS01 ZN N/A GO:0000162 ... Q06121 N/A
    906766 8w41:A (3.54) BS01 ADP ? GO:0000146 ... Q9UM54 38331992
    906767 8w41:B (3.54) BS01 CA ? GO:0000086 ... P0DP26 38331992
    906768 8w41:B (3.54) BS02 CA ? GO:0000086 ... P0DP26 38331992
    906769 8w41:B (3.54) BS03 CA ? GO:0000086 ... P0DP26 38331992
    906770 8w41:B (3.54) BS04 CA ? GO:0000086 ... P0DP26 38331992
    906771 8w42:A (1.45) BS01 STL ? N/A P02766 37910439
    906772 8w42:B (1.45) BS01 STL ? N/A P02766 37910439
    906773 8w43:A (1.302) BS01 PIT ? N/A P02766 37910439
    906774 8w43:B (1.302) BS01 PIT ? N/A P02766 37910439
    906775 8w44:A (1.399) BS01 EZE ? N/A P02766 37910439
    906776 8w44:B (1.399) BS01 EZE ? N/A P02766 37910439
    906777 8w44:B (1.399) BS02 EZE ? N/A P02766 37910439
    906778 8w45:A (1.1) BS01 8KZ ? N/A P02766 37910439
    906779 8w45:B (1.1) BS01 8KZ ? N/A P02766 37910439
    906780 8w46:A (1.35) BS01 3RL ? N/A P02766 37910439
    906781 8w46:B (1.35) BS01 3RL ? N/A P02766 37910439
    906782 8w46:B (1.35) BS02 3RL ? N/A P02766 37910439
    906783 8w47:A (1.4) BS01 P5O ? N/A P02766 37910439
    906784 8w47:B (1.4) BS01 P5O ? N/A P02766 37910439
    906785 8w48:A (1.19) BS01 PIT ? N/A P02766 37910439
    906786 8w48:B (1.19) BS01 PIT ? N/A P02766 37910439
    906787 8w49:A (1.77) BS01 NAP N/A GO:0000287 ... O88844 40064325
    906788 8w49:A (1.77) BS02 NAP N/A GO:0000287 ... O88844 40064325
    906789 8w49:B (1.77) BS01 NAP N/A GO:0000287 ... O88844 40064325
    906790 8w49:B (1.77) BS02 NAP N/A GO:0000287 ... O88844 40064325
    906791 8w49:C (1.77) BS01 NAP N/A GO:0000287 ... O88844 40064325
    906792 8w49:D (1.77) BS01 NAP N/A GO:0000287 ... O88844 40064325
    906793 8w4a:A (2.69) BS01 UV6 N/A GO:0005765 ... Q68CP4 38769387
    906794 8w4a:A (2.69) BS02 ACO N/A GO:0005765 ... Q68CP4 38769387
    906795 8w4a:A (2.69) BS03 CLR N/A GO:0005765 ... Q68CP4 38769387
    906796 8w4a:A (2.69) BS04 CLR N/A GO:0005765 ... Q68CP4 38769387
    906797 8w4a:B (2.69) BS01 UV6 N/A GO:0005765 ... Q68CP4 38769387
    906798 8w4a:B (2.69) BS02 ACO N/A GO:0005765 ... Q68CP4 38769387
    906799 8w4a:B (2.69) BS03 CLR N/A GO:0005765 ... Q68CP4 38769387
    906800 8w4a:B (2.69) BS04 CLR N/A GO:0005765 ... Q68CP4 38769387

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).