SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    906801 8xjv:c (3.6) BS02 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906802 8xjv:d (3.6) BS01 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906803 8xjv:d (3.6) BS02 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906804 8xjv:e (3.6) BS01 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906805 8xjv:e (3.6) BS02 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906806 8xjv:f (3.6) BS01 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906807 8xjv:f (3.6) BS02 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906808 8xjv:g (3.6) BS01 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906809 8xjv:g (3.6) BS02 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906810 8xjv:h (3.6) BS01 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906811 8xjv:h (3.6) BS02 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906812 8xjv:i (3.6) BS01 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906813 8xjv:i (3.6) BS02 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906814 8xjv:j (3.6) BS01 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906815 8xjv:j (3.6) BS02 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906816 8xjv:k (3.6) BS01 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906817 8xjv:k (3.6) BS02 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906818 8xjv:l (3.6) BS01 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906819 8xjv:l (3.6) BS02 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906820 8xjv:m (3.6) BS01 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906821 8xjv:m (3.6) BS02 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906822 8xjv:n (3.6) BS01 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906823 8xjv:n (3.6) BS02 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906824 8xjv:o (3.6) BS01 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906825 8xjv:o (3.6) BS02 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906826 8xjv:p (3.6) BS01 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906827 8xjv:p (3.6) BS02 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906828 8xjv:q (3.6) BS01 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906829 8xjv:q (3.6) BS02 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906830 8xjv:r (3.6) BS01 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906831 8xjv:r (3.6) BS02 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906832 8xjv:s (3.6) BS01 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906833 8xjv:s (3.6) BS02 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906834 8xjv:t (3.6) BS01 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906835 8xjv:t (3.6) BS02 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906836 8xjv:u (3.6) BS01 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906837 8xjv:u (3.6) BS02 dna N/A GO:0000786 ... A0A310TTQ1 39103524
    906838 8xjv:v (3.6) BS01 dna N/A GO:0000786 ... P62799 39103524
    906839 8xjv:v (3.6) BS02 dna N/A GO:0000786 ... P62799 39103524
    906840 8xjv:w (3.6) BS01 dna N/A GO:0000786 ... P62799 39103524
    906841 8xjv:w (3.6) BS02 dna N/A GO:0000786 ... P62799 39103524
    906842 8xjv:x (3.6) BS01 dna N/A GO:0000786 ... P62799 39103524
    906843 8xjv:x (3.6) BS02 dna N/A GO:0000786 ... P62799 39103524
    906844 8xjv:y (3.6) BS01 dna N/A GO:0000786 ... P62799 39103524
    906845 8xjv:y (3.6) BS02 dna N/A GO:0000786 ... P62799 39103524
    906846 8xjv:z (3.6) BS01 dna N/A GO:0000786 ... P62799 39103524
    906847 8xjw:A (2.84) BS01 dna N/A N/A N/A 39315697
    906848 8xjw:A (2.84) BS02 rna N/A N/A N/A 39315697
    906849 8xjx:A (2.78) BS01 dna N/A N/A N/A 39315697
    906850 8xjx:A (2.78) BS02 dna N/A N/A N/A 39315697
    906851 8xk0:A (2.96) BS01 dna N/A N/A N/A 39315697
    906852 8xk0:A (2.96) BS02 dna N/A N/A N/A 39315697
    906853 8xk0:A (2.96) BS03 MN N/A N/A N/A 39315697
    906854 8xk3:A (2.76) BS01 dna N/A N/A N/A 39315697
    906855 8xk3:A (2.76) BS02 dna N/A N/A N/A 39315697
    906856 8xk3:A (2.76) BS03 dna N/A N/A N/A 39315697
    906857 8xk3:A (2.76) BS04 MN N/A N/A N/A 39315697
    906858 8xk3:A (2.76) BS05 MN N/A N/A N/A 39315697
    906859 8xk4:A (2.94) BS01 dna N/A N/A N/A 39315697
    906860 8xk4:A (2.94) BS02 dna N/A N/A N/A 39315697
    906861 8xk4:A (2.94) BS03 DC N/A N/A N/A 39315697
    906862 8xk4:A (2.94) BS04 MN N/A N/A N/A 39315697
    906863 8xk7:A (2.0) BS01 dna N/A N/A P19821 39147125
    906864 8xk7:A (2.0) BS02 dna N/A N/A P19821 39147125
    906865 8xk7:A (2.0) BS03 PO4 N/A N/A P19821 39147125
    906866 8xk7:A (2.0) BS04 PO4 N/A N/A P19821 39147125
    906867 8xk9:A (2.4) BS01 dna N/A N/A P52028 39147125
    906868 8xk9:A (2.4) BS02 dna N/A N/A P52028 39147125
    906869 8xk9:A (2.4) BS03 MG N/A N/A P52028 39147125
    906870 8xk9:A (2.4) BS04 MG N/A N/A P52028 39147125
    906871 8xk9:A (2.4) BS05 A1LWE N/A N/A P52028 39147125
    906872 8xk9:A (2.4) BS06 PO4 N/A N/A P52028 39147125
    906873 8xk9:D (2.4) BS01 dna N/A N/A P52028 39147125
    906874 8xk9:D (2.4) BS02 dna N/A N/A P52028 39147125
    906875 8xk9:D (2.4) BS03 MG N/A N/A P52028 39147125
    906876 8xk9:D (2.4) BS04 MG N/A N/A P52028 39147125
    906877 8xk9:D (2.4) BS05 A1LWE N/A N/A P52028 39147125
    906878 8xk9:D (2.4) BS06 PO4 N/A N/A P52028 39147125
    906879 8xkc:A (2.18) BS01 peptide N/A N/A A0A0G2JPD3 38885041
    906880 8xkd:A (1.73) BS01 UDP N/A N/A A0A5D0ENI3 39265897
    906881 8xkd:B (1.73) BS01 UDP N/A N/A A0A5D0ENI3 39265897
    906882 8xke:A (1.92) BS01 peptide N/A N/A A0A0G2JL56 38885041
    906883 8xkf:A (2.5) BS01 CTP 2.7.7.60
    4.6.1.12
    GO:0003824 ... O25664 38537721
    906884 8xkf:A (2.5) BS02 ZN 2.7.7.60
    4.6.1.12
    GO:0003824 ... O25664 38537721
    906885 8xkf:A (2.5) BS03 CDP 2.7.7.60
    4.6.1.12
    GO:0003824 ... O25664 38537721
    906886 8xkf:B (2.5) BS01 CTP 2.7.7.60
    4.6.1.12
    GO:0003824 ... O25664 38537721
    906887 8xkf:B (2.5) BS02 C5P 2.7.7.60
    4.6.1.12
    GO:0003824 ... O25664 38537721
    906888 8xkf:C (2.5) BS01 C5P 2.7.7.60
    4.6.1.12
    GO:0003824 ... O25664 38537721
    906889 8xkf:C (2.5) BS02 CTP 2.7.7.60
    4.6.1.12
    GO:0003824 ... O25664 38537721
    906890 8xkf:C (2.5) BS03 CDP 2.7.7.60
    4.6.1.12
    GO:0003824 ... O25664 38537721
    906891 8xkf:D (2.5) BS01 CTP 2.7.7.60
    4.6.1.12
    GO:0003824 ... O25664 38537721
    906892 8xkf:D (2.5) BS02 C5P 2.7.7.60
    4.6.1.12
    GO:0003824 ... O25664 38537721
    906893 8xkf:D (2.5) BS03 ZN 2.7.7.60
    4.6.1.12
    GO:0003824 ... O25664 38537721
    906894 8xkf:D (2.5) BS04 CDP 2.7.7.60
    4.6.1.12
    GO:0003824 ... O25664 38537721
    906895 8xkf:E (2.5) BS01 CTP 2.7.7.60
    4.6.1.12
    GO:0003824 ... O25664 38537721
    906896 8xkf:E (2.5) BS02 CDP 2.7.7.60
    4.6.1.12
    GO:0003824 ... O25664 38537721
    906897 8xkf:E (2.5) BS03 C5P 2.7.7.60
    4.6.1.12
    GO:0003824 ... O25664 38537721
    906898 8xkf:F (2.5) BS01 C5P 2.7.7.60
    4.6.1.12
    GO:0003824 ... O25664 38537721
    906899 8xkf:F (2.5) BS02 CTP 2.7.7.60
    4.6.1.12
    GO:0003824 ... O25664 38537721
    906900 8xkf:F (2.5) BS03 C5P 2.7.7.60
    4.6.1.12
    GO:0003824 ... O25664 38537721
    906901 8xkh:A (3.87) BS01 ZN N/A GO:0003151 ... P11716 39428398
    906902 8xkh:A (3.87) BS02 CA N/A GO:0003151 ... P11716 39428398
    906903 8xkh:A (3.87) BS03 ATP N/A GO:0003151 ... P11716 39428398
    906904 8xkh:A (3.87) BS04 CFF N/A GO:0003151 ... P11716 39428398
    906905 8xkh:A (3.87) BS05 A1LV1 N/A GO:0003151 ... P11716 39428398
    906906 8xkh:B (3.87) BS01 ZN N/A GO:0003151 ... P11716 39428398
    906907 8xkh:B (3.87) BS02 CA N/A GO:0003151 ... P11716 39428398
    906908 8xkh:B (3.87) BS03 ATP N/A GO:0003151 ... P11716 39428398
    906909 8xkh:B (3.87) BS04 CFF N/A GO:0003151 ... P11716 39428398
    906910 8xkh:B (3.87) BS05 A1LV1 N/A GO:0003151 ... P11716 39428398
    906911 8xkh:C (3.87) BS01 ZN N/A GO:0003151 ... P11716 39428398
    906912 8xkh:C (3.87) BS02 CA N/A GO:0003151 ... P11716 39428398
    906913 8xkh:C (3.87) BS03 ATP N/A GO:0003151 ... P11716 39428398
    906914 8xkh:C (3.87) BS04 CFF N/A GO:0003151 ... P11716 39428398
    906915 8xkh:C (3.87) BS05 A1LV1 N/A GO:0003151 ... P11716 39428398
    906916 8xkh:D (3.87) BS01 ZN N/A GO:0003151 ... P11716 39428398
    906917 8xkh:D (3.87) BS02 CA N/A GO:0003151 ... P11716 39428398
    906918 8xkh:D (3.87) BS03 ATP N/A GO:0003151 ... P11716 39428398
    906919 8xkh:D (3.87) BS04 CFF N/A GO:0003151 ... P11716 39428398
    906920 8xkh:D (3.87) BS05 A1LV1 N/A GO:0003151 ... P11716 39428398
    906921 8xkl:0 (2.84) BS01 CLA N/A GO:0009765 ... N/A 38806516
    906922 8xkl:0 (2.84) BS02 CLA N/A GO:0009765 ... N/A 38806516
    906923 8xkl:0 (2.84) BS03 CLA N/A GO:0009765 ... N/A 38806516
    906924 8xkl:0 (2.84) BS04 CLA N/A GO:0009765 ... N/A 38806516
    906925 8xkl:0 (2.84) BS05 CLA N/A GO:0009765 ... N/A 38806516
    906926 8xkl:0 (2.84) BS06 CLA N/A GO:0009765 ... N/A 38806516
    906927 8xkl:0 (2.84) BS07 CLA N/A GO:0009765 ... N/A 38806516
    906928 8xkl:0 (2.84) BS08 CLA N/A GO:0009765 ... N/A 38806516
    906929 8xkl:0 (2.84) BS09 CLA N/A GO:0009765 ... N/A 38806516
    906930 8xkl:0 (2.84) BS10 KC2 N/A GO:0009765 ... N/A 38806516
    906931 8xkl:0 (2.84) BS11 CLA N/A GO:0009765 ... N/A 38806516
    906932 8xkl:0 (2.84) BS12 CLA N/A GO:0009765 ... N/A 38806516
    906933 8xkl:0 (2.84) BS13 CLA N/A GO:0009765 ... N/A 38806516
    906934 8xkl:0 (2.84) BS14 IHT N/A GO:0009765 ... N/A 38806516
    906935 8xkl:0 (2.84) BS15 II0 N/A GO:0009765 ... N/A 38806516
    906936 8xkl:0 (2.84) BS16 II0 N/A GO:0009765 ... N/A 38806516
    906937 8xkl:0 (2.84) BS17 IHT N/A GO:0009765 ... N/A 38806516
    906938 8xkl:0 (2.84) BS18 II0 N/A GO:0009765 ... N/A 38806516
    906939 8xkl:0 (2.84) BS19 II0 N/A GO:0009765 ... N/A 38806516
    906940 8xkl:0 (2.84) BS20 CLA N/A GO:0009765 ... N/A 38806516
    906941 8xkl:7 (2.84) BS01 CLA N/A GO:0009765 ... N/A 38806516
    906942 8xkl:7 (2.84) BS02 CLA N/A GO:0009765 ... N/A 38806516
    906943 8xkl:7 (2.84) BS03 CLA N/A GO:0009765 ... N/A 38806516
    906944 8xkl:7 (2.84) BS04 CLA N/A GO:0009765 ... N/A 38806516
    906945 8xkl:7 (2.84) BS05 CLA N/A GO:0009765 ... N/A 38806516
    906946 8xkl:7 (2.84) BS06 CLA N/A GO:0009765 ... N/A 38806516
    906947 8xkl:7 (2.84) BS07 CLA N/A GO:0009765 ... N/A 38806516
    906948 8xkl:7 (2.84) BS08 CLA N/A GO:0009765 ... N/A 38806516
    906949 8xkl:7 (2.84) BS09 CLA N/A GO:0009765 ... N/A 38806516
    906950 8xkl:7 (2.84) BS10 KC2 N/A GO:0009765 ... N/A 38806516
    906951 8xkl:7 (2.84) BS11 CLA N/A GO:0009765 ... N/A 38806516
    906952 8xkl:7 (2.84) BS12 CLA N/A GO:0009765 ... N/A 38806516
    906953 8xkl:7 (2.84) BS13 CLA N/A GO:0009765 ... N/A 38806516
    906954 8xkl:7 (2.84) BS14 II0 N/A GO:0009765 ... N/A 38806516
    906955 8xkl:7 (2.84) BS15 II3 N/A GO:0009765 ... N/A 38806516
    906956 8xkl:7 (2.84) BS16 II0 N/A GO:0009765 ... N/A 38806516
    906957 8xkl:7 (2.84) BS17 II0 N/A GO:0009765 ... N/A 38806516
    906958 8xkl:7 (2.84) BS18 IHT N/A GO:0009765 ... N/A 38806516
    906959 8xkl:7 (2.84) BS19 II0 N/A GO:0009765 ... N/A 38806516
    906960 8xkl:8 (2.84) BS01 CLA N/A GO:0009765 ... N/A 38806516
    906961 8xkl:8 (2.84) BS02 II0 N/A GO:0009765 ... N/A 38806516
    906962 8xkl:8 (2.84) BS03 CLA N/A GO:0009765 ... N/A 38806516
    906963 8xkl:8 (2.84) BS04 CLA N/A GO:0009765 ... N/A 38806516
    906964 8xkl:8 (2.84) BS05 CLA N/A GO:0009765 ... N/A 38806516
    906965 8xkl:8 (2.84) BS06 CLA N/A GO:0009765 ... N/A 38806516
    906966 8xkl:8 (2.84) BS07 CLA N/A GO:0009765 ... N/A 38806516
    906967 8xkl:8 (2.84) BS08 CLA N/A GO:0009765 ... N/A 38806516
    906968 8xkl:8 (2.84) BS09 CLA N/A GO:0009765 ... N/A 38806516
    906969 8xkl:8 (2.84) BS10 CLA N/A GO:0009765 ... N/A 38806516
    906970 8xkl:8 (2.84) BS11 KC2 N/A GO:0009765 ... N/A 38806516
    906971 8xkl:8 (2.84) BS12 CLA N/A GO:0009765 ... N/A 38806516
    906972 8xkl:8 (2.84) BS13 CLA N/A GO:0009765 ... N/A 38806516
    906973 8xkl:8 (2.84) BS14 II0 N/A GO:0009765 ... N/A 38806516
    906974 8xkl:8 (2.84) BS15 II0 N/A GO:0009765 ... N/A 38806516
    906975 8xkl:8 (2.84) BS16 II0 N/A GO:0009765 ... N/A 38806516
    906976 8xkl:8 (2.84) BS17 IHT N/A GO:0009765 ... N/A 38806516
    906977 8xkl:8 (2.84) BS18 II0 N/A GO:0009765 ... N/A 38806516
    906978 8xkl:8 (2.84) BS19 CLA N/A GO:0009765 ... N/A 38806516
    906979 8xkl:9 (2.84) BS01 CLA N/A GO:0009765 ... N/A 38806516
    906980 8xkl:9 (2.84) BS02 II0 N/A GO:0009765 ... N/A 38806516
    906981 8xkl:9 (2.84) BS03 CLA N/A GO:0009765 ... N/A 38806516
    906982 8xkl:9 (2.84) BS04 CLA N/A GO:0009765 ... N/A 38806516
    906983 8xkl:9 (2.84) BS05 CLA N/A GO:0009765 ... N/A 38806516
    906984 8xkl:9 (2.84) BS06 CLA N/A GO:0009765 ... N/A 38806516
    906985 8xkl:9 (2.84) BS07 CLA N/A GO:0009765 ... N/A 38806516
    906986 8xkl:9 (2.84) BS08 CLA N/A GO:0009765 ... N/A 38806516
    906987 8xkl:9 (2.84) BS09 CLA N/A GO:0009765 ... N/A 38806516
    906988 8xkl:9 (2.84) BS10 CLA N/A GO:0009765 ... N/A 38806516
    906989 8xkl:9 (2.84) BS11 CLA N/A GO:0009765 ... N/A 38806516
    906990 8xkl:9 (2.84) BS12 CLA N/A GO:0009765 ... N/A 38806516
    906991 8xkl:9 (2.84) BS13 II0 N/A GO:0009765 ... N/A 38806516
    906992 8xkl:9 (2.84) BS14 II0 N/A GO:0009765 ... N/A 38806516
    906993 8xkl:9 (2.84) BS15 II0 N/A GO:0009765 ... N/A 38806516
    906994 8xkl:9 (2.84) BS16 8CT N/A GO:0009765 ... N/A 38806516
    906995 8xkl:G (2.84) BS01 CLA N/A N/A N/A 38806516
    906996 8xkl:P (2.84) BS01 CLA N/A GO:0009765 ... N/A 38806516
    906997 8xkl:P (2.84) BS02 CLA N/A GO:0009765 ... N/A 38806516
    906998 8xkl:P (2.84) BS03 CLA N/A GO:0009765 ... N/A 38806516
    906999 8xkl:P (2.84) BS04 CLA N/A GO:0009765 ... N/A 38806516
    907000 8xkl:P (2.84) BS05 KC2 N/A GO:0009765 ... N/A 38806516

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).