SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    907201 8w7q:A (2.1) BS01 FE N/A GO:0008199 ... A0A084EX36 38641862
    907202 8w7r:A (2.503) BS01 RET N/A GO:0005216 ... Q18DH8 N/A
    907203 8w7r:B (2.503) BS01 RET N/A GO:0005216 ... Q18DH8 N/A
    907204 8w7t:A (2.499) BS01 FE N/A GO:0008199 ... A0A084EX36 38641862
    907205 8w7t:A (2.499) BS02 FE N/A GO:0008199 ... A0A084EX36 38641862
    907206 8w7u:A (2.502) BS01 FE N/A GO:0008199 ... A0A084EX36 38641862
    907207 8w7v:A (2.805) BS01 FE N/A GO:0008199 ... A0A084EX36 38641862
    907208 8w7x:A (2.2) BS01 ZN N/A GO:0004089 ... N/A N/A
    907209 8w7x:A (2.2) BS02 BCT N/A GO:0004089 ... N/A N/A
    907210 8w7x:B (2.2) BS01 ZN N/A GO:0004089 ... N/A N/A
    907211 8w7x:B (2.2) BS02 BCT N/A GO:0004089 ... N/A N/A
    907212 8w7x:C (2.2) BS01 ZN N/A GO:0004089 ... N/A N/A
    907213 8w7x:C (2.2) BS02 BCT N/A GO:0004089 ... N/A N/A
    907214 8w7x:D (2.2) BS01 ZN N/A GO:0004089 ... N/A N/A
    907215 8w7x:D (2.2) BS02 BCT N/A GO:0004089 ... N/A N/A
    907216 8w7y:A (2.4) BS01 UDP N/A GO:0008194 ... N/A N/A
    907217 8w87:R (2.8) BS01 B40 ? GO:0001594 ... Q96RJ0 37935377
    907218 8w88:R (2.6) BS01 CLR ? GO:0001594 ... Q96RJ0 37935377
    907219 8w88:R (2.6) BS02 CLR ? GO:0001594 ... Q96RJ0 37935377
    907220 8w88:R (2.6) BS03 UJL ? GO:0001594 ... Q96RJ0 37935377
    907221 8w89:R (3.0) BS01 PEA ? GO:0001594 ... Q96RJ0 37935377
    907222 8w8a:R (2.8) BS01 T5U ? GO:0001594 ... Q96RJ0 37935377
    907223 8w8b:R (3.0) BS01 CLR ? GO:0001586 ... P08908
    P0ABE7
    37935377
    907224 8w8b:R (3.0) BS02 UJL ? GO:0001586 ... P08908
    P0ABE7
    37935377
    907225 8w8e:A (3.9) BS01 dna 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38816438
    907226 8w8e:A (3.9) BS02 rna 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38816438
    907227 8w8e:A (3.9) BS03 dna 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38816438
    907228 8w8e:A (3.9) BS04 MG 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38816438
    907229 8w8e:A (3.9) BS05 ZN 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38816438
    907230 8w8e:A (3.9) BS06 ZN 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38816438
    907231 8w8e:B (3.9) BS01 rna 2.7.7.6 GO:0000781 ... I3LGP4 38816438
    907232 8w8e:B (3.9) BS02 dna 2.7.7.6 GO:0000781 ... I3LGP4 38816438
    907233 8w8e:B (3.9) BS03 ZN 2.7.7.6 GO:0000781 ... I3LGP4 38816438
    907234 8w8e:C (3.9) BS01 ZN ? GO:0003677 ... I3LCH3 38816438
    907235 8w8e:E (3.9) BS01 dna ? GO:0003677 ... I3LSI7 38816438
    907236 8w8e:I (3.9) BS01 ZN ? GO:0001193 ... P60899 38816438
    907237 8w8e:I (3.9) BS02 ZN ? GO:0001193 ... P60899 38816438
    907238 8w8e:L (3.9) BS01 ZN ? GO:0001650 ... A0A4X1TRS6 38816438
    907239 8w8e:Z (3.9) BS01 dna ? GO:0000122 ... O00267 38816438
    907240 8w8e:a (3.9) BS01 GTP 2.7.7.50
    3.6.1.74
    GO:0003824 ... O60942 38816438
    907241 8w8f:A (4.0) BS01 dna 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38816438
    907242 8w8f:A (4.0) BS02 rna 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38816438
    907243 8w8f:A (4.0) BS03 dna 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38816438
    907244 8w8f:A (4.0) BS04 MG 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38816438
    907245 8w8f:A (4.0) BS05 ZN 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38816438
    907246 8w8f:A (4.0) BS06 ZN 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38816438
    907247 8w8f:B (4.0) BS01 rna 2.7.7.6 GO:0000781 ... I3LGP4 38816438
    907248 8w8f:B (4.0) BS02 dna 2.7.7.6 GO:0000781 ... I3LGP4 38816438
    907249 8w8f:B (4.0) BS03 ZN 2.7.7.6 GO:0000781 ... I3LGP4 38816438
    907250 8w8f:C (4.0) BS01 ZN ? GO:0003677 ... I3LCH3 38816438
    907251 8w8f:E (4.0) BS01 dna ? GO:0003677 ... I3LSI7 38816438
    907252 8w8f:I (4.0) BS01 ZN ? GO:0001193 ... P60899 38816438
    907253 8w8f:I (4.0) BS02 ZN ? GO:0001193 ... P60899 38816438
    907254 8w8f:L (4.0) BS01 ZN ? GO:0001650 ... A0A4X1TRS6 38816438
    907255 8w8f:Z (4.0) BS01 dna ? GO:0000122 ... O00267 38816438
    907256 8w8g:A (2.7) BS01 peptide N/A GO:0042162 ... P54274 39634130
    907257 8w8g:B (2.7) BS01 peptide N/A GO:0042162 ... P54274 39634130
    907258 8w8g:C (2.7) BS01 peptide N/A GO:0042162 ... P54274 39634130
    907259 8w8g:C (2.7) BS02 peptide N/A GO:0042162 ... P54274 39634130
    907260 8w8g:D (2.7) BS01 peptide N/A GO:0042162 ... P54274 39634130
    907261 8w8g:D (2.7) BS02 peptide N/A GO:0042162 ... P54274 39634130
    907262 8w8h:A (3.2) BS01 ILE N/A GO:0051213 ... N/A N/A
    907263 8w8h:A (3.2) BS02 ILE N/A GO:0051213 ... N/A N/A
    907264 8w8h:B (3.2) BS01 ILE N/A GO:0051213 ... N/A N/A
    907265 8w8h:B (3.2) BS02 ILE N/A GO:0051213 ... N/A N/A
    907266 8w8h:C (3.2) BS01 ILE N/A GO:0051213 ... N/A N/A
    907267 8w8h:C (3.2) BS02 ILE N/A GO:0051213 ... N/A N/A
    907268 8w8h:D (3.2) BS01 ILE N/A GO:0051213 ... N/A N/A
    907269 8w8h:D (3.2) BS02 ILE N/A GO:0051213 ... N/A N/A
    907270 8w8j:A (1.807) BS01 W1Q N/A GO:0000166 ... Q9I502 40253792
    907271 8w8j:B (1.807) BS01 W1Q N/A GO:0000166 ... Q9I502 40253792
    907272 8w8k:A (2.25) BS01 TUH 3.6.4.10 GO:0005524 ... P07900 38665669
    907273 8w8k:B (2.25) BS01 TUH 3.6.4.10 GO:0005524 ... P07900 38665669
    907274 8w8l:A (1.824) BS01 W20 N/A GO:0000166 ... Q9I502 40253792
    907275 8w8l:A (1.824) BS02 MG N/A GO:0000166 ... Q9I502 40253792
    907276 8w8l:A (1.824) BS03 MG N/A GO:0000166 ... Q9I502 40253792
    907277 8w8l:A (1.824) BS04 MG N/A GO:0000166 ... Q9I502 40253792
    907278 8w8l:A (1.824) BS05 MG N/A GO:0000166 ... Q9I502 40253792
    907279 8w8l:A (1.824) BS06 MG N/A GO:0000166 ... Q9I502 40253792
    907280 8w8l:A (1.824) BS07 MG N/A GO:0000166 ... Q9I502 40253792
    907281 8w8l:A (1.824) BS08 MG N/A GO:0000166 ... Q9I502 40253792
    907282 8w8l:B (1.824) BS01 W20 N/A GO:0000166 ... Q9I502 40253792
    907283 8w8l:B (1.824) BS02 MG N/A GO:0000166 ... Q9I502 40253792
    907284 8w8l:B (1.824) BS03 MG N/A GO:0000166 ... Q9I502 40253792
    907285 8w8n:B (2.693) BS01 MG N/A GO:0003677 ... Q5SHR6 38990947
    907286 8w8n:C (2.693) BS01 dna N/A GO:0003677 ... Q8RQE9 38990947
    907287 8w8n:C (2.693) BS02 dna N/A GO:0003677 ... Q8RQE9 38990947
    907288 8w8n:C (2.693) BS03 rna N/A GO:0003677 ... Q8RQE9 38990947
    907289 8w8n:D (2.693) BS01 dna N/A GO:0000287 ... Q8RQE8 38990947
    907290 8w8n:D (2.693) BS02 dna N/A GO:0000287 ... Q8RQE8 38990947
    907291 8w8n:D (2.693) BS03 rna N/A GO:0000287 ... Q8RQE8 38990947
    907292 8w8n:D (2.693) BS04 ZN N/A GO:0000287 ... Q8RQE8 38990947
    907293 8w8n:D (2.693) BS05 ZN N/A GO:0000287 ... Q8RQE8 38990947
    907294 8w8n:D (2.693) BS06 MG N/A GO:0000287 ... Q8RQE8 38990947
    907295 8w8n:D (2.693) BS07 MG N/A GO:0000287 ... Q8RQE8 38990947
    907296 8w8n:F (2.693) BS01 dna N/A GO:0003677 ... Q5SKW1 38990947
    907297 8w8n:F (2.693) BS02 dna N/A GO:0003677 ... Q5SKW1 38990947
    907298 8w8n:F (2.693) BS03 MG N/A GO:0003677 ... Q5SKW1 38990947
    907299 8w8o:B (2.512) BS01 MG N/A GO:0003677 ... Q5SHR6 38990947
    907300 8w8o:C (2.512) BS01 dna N/A GO:0003677 ... Q8RQE9 38990947
    907301 8w8o:C (2.512) BS02 dna N/A GO:0003677 ... Q8RQE9 38990947
    907302 8w8o:C (2.512) BS03 rna N/A GO:0003677 ... Q8RQE9 38990947
    907303 8w8o:D (2.512) BS01 dna N/A GO:0000287 ... Q8RQE8 38990947
    907304 8w8o:D (2.512) BS02 dna N/A GO:0000287 ... Q8RQE8 38990947
    907305 8w8o:D (2.512) BS03 rna N/A GO:0000287 ... Q8RQE8 38990947
    907306 8w8o:D (2.512) BS04 ZN N/A GO:0000287 ... Q8RQE8 38990947
    907307 8w8o:D (2.512) BS05 ZN N/A GO:0000287 ... Q8RQE8 38990947
    907308 8w8o:D (2.512) BS06 MG N/A GO:0000287 ... Q8RQE8 38990947
    907309 8w8o:D (2.512) BS07 MG N/A GO:0000287 ... Q8RQE8 38990947
    907310 8w8o:F (2.512) BS01 dna N/A GO:0003677 ... Q5SKW1 38990947
    907311 8w8o:F (2.512) BS02 dna N/A GO:0003677 ... Q5SKW1 38990947
    907312 8w8o:F (2.512) BS03 MG N/A GO:0003677 ... Q5SKW1 38990947
    907313 8w8p:B (3.165) BS01 MG N/A GO:0003677 ... Q5SHR6 38990947
    907314 8w8p:C (3.165) BS01 dna N/A GO:0003677 ... Q8RQE9 38990947
    907315 8w8p:C (3.165) BS02 dna N/A GO:0003677 ... Q8RQE9 38990947
    907316 8w8p:C (3.165) BS03 rna N/A GO:0003677 ... Q8RQE9 38990947
    907317 8w8p:D (3.165) BS01 dna N/A GO:0000287 ... Q8RQE8 38990947
    907318 8w8p:D (3.165) BS02 dna N/A GO:0000287 ... Q8RQE8 38990947
    907319 8w8p:D (3.165) BS03 rna N/A GO:0000287 ... Q8RQE8 38990947
    907320 8w8p:D (3.165) BS04 ZN N/A GO:0000287 ... Q8RQE8 38990947
    907321 8w8p:D (3.165) BS05 ZN N/A GO:0000287 ... Q8RQE8 38990947
    907322 8w8p:D (3.165) BS06 MG N/A GO:0000287 ... Q8RQE8 38990947
    907323 8w8p:D (3.165) BS07 MG N/A GO:0000287 ... Q8RQE8 38990947
    907324 8w8p:D (3.165) BS08 2TM N/A GO:0000287 ... Q8RQE8 38990947
    907325 8w8p:F (3.165) BS01 dna N/A GO:0003677 ... Q5SKW1 38990947
    907326 8w8p:F (3.165) BS02 dna N/A GO:0003677 ... Q5SKW1 38990947
    907327 8w8p:F (3.165) BS03 MG N/A GO:0003677 ... Q5SKW1 38990947
    907328 8w8v:A (0.85) BS01 GLC N/A GO:0004553 ... H3K419 N/A
    907329 8w8v:A (0.85) BS02 BGC N/A GO:0004553 ... H3K419 N/A
    907330 8w8v:A (0.85) BS03 BGC N/A GO:0004553 ... H3K419 N/A
    907331 8w8v:A (0.85) BS04 BGC N/A GO:0004553 ... H3K419 N/A
    907332 8w8w:R (2.9) BS01 peptide N/A GO:0002027 ... P41968 N/A
    907333 8w8w:R (2.9) BS02 CA N/A GO:0002027 ... P41968 N/A
    907334 8w8x:R (2.9) BS01 peptide N/A GO:0002027 ... P41968 N/A
    907335 8w8x:R (2.9) BS02 CA N/A GO:0002027 ... P41968 N/A
    907336 8w8y:R (2.9) BS01 peptide N/A GO:0002027 ... P41968 N/A
    907337 8w8y:R (2.9) BS02 CA N/A GO:0002027 ... P41968 N/A
    907338 8w91:b (2.12) BS01 FE N/A GO:0004322 ... A0A173CSP7 38315811
    907339 8w91:b (2.12) BS02 FE N/A GO:0004322 ... A0A173CSP7 38315811
    907340 8w92:A (2.12) BS01 FE N/A GO:0004322 ... P02794 38315811
    907341 8w92:A (2.12) BS02 FE N/A GO:0004322 ... P02794 38315811
    907342 8w93:b (2.09) BS01 FE N/A GO:0004322 ... A0A173CSP7 38315811
    907343 8w93:b (2.09) BS02 FE N/A GO:0004322 ... A0A173CSP7 38315811
    907344 8w94:b (2.3) BS01 FE N/A GO:0004322 ... A0A173CSP7 38315811
    907345 8w94:b (2.3) BS02 FE N/A GO:0004322 ... A0A173CSP7 38315811
    907346 8w94:b (2.3) BS03 FE N/A GO:0004322 ... A0A173CSP7 38315811
    907347 8w94:b (2.3) BS04 PEO N/A GO:0004322 ... A0A173CSP7 38315811
    907348 8w95:b (2.03) BS01 FE N/A GO:0004322 ... A0A173CSP7 38315811
    907349 8w95:b (2.03) BS02 FE N/A GO:0004322 ... A0A173CSP7 38315811
    907350 8w95:b (2.03) BS03 FE N/A GO:0004322 ... A0A173CSP7 38315811
    907351 8w95:b (2.03) BS04 OXY N/A GO:0004322 ... A0A173CSP7 38315811
    907352 8w98:A (1.9) BS01 QGL N/A GO:0003824 ... G8TV28 39642872
    907353 8w9a:A (2.7) BS01 UEX 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001944 ... P42336 38582077
    907354 8w9b:A (3.0) BS01 UJ3 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001944 ... P42336 38582077
    907355 8w9c:B (3.3) BS01 ZN 3.5.1.98 GO:0000082 ... P32561 38598631
    907356 8w9c:E (3.3) BS01 ZN ? GO:0000118 ... Q04779 38598631
    907357 8w9c:E (3.3) BS02 ZN ? GO:0000118 ... Q04779 38598631
    907358 8w9c:E (3.3) BS03 ZN ? GO:0000118 ... Q04779 38598631
    907359 8w9c:F (3.3) BS01 ZN ? GO:0000118 ... Q04779 38598631
    907360 8w9c:F (3.3) BS02 ZN ? GO:0000118 ... Q04779 38598631
    907361 8w9d:B (3.9) BS01 peptide 3.5.1.98 GO:0000082 ... P32561 38598631
    907362 8w9d:B (3.9) BS02 ZN 3.5.1.98 GO:0000082 ... P32561 38598631
    907363 8w9d:E (3.9) BS01 ZN ? GO:0000118 ... Q04779 38598631
    907364 8w9d:E (3.9) BS02 ZN ? GO:0000118 ... Q04779 38598631
    907365 8w9d:E (3.9) BS03 ZN ? GO:0000118 ... Q04779 38598631
    907366 8w9d:F (3.9) BS01 ZN ? GO:0000118 ... Q04779 38598631
    907367 8w9d:F (3.9) BS02 ZN ? GO:0000118 ... Q04779 38598631
    907368 8w9d:a (3.9) BS01 dna ? GO:0000786 ... P68431 38598631
    907369 8w9d:a (3.9) BS02 dna ? GO:0000786 ... P68431 38598631
    907370 8w9d:b (3.9) BS01 dna ? GO:0000781 ... P62805 38598631
    907371 8w9d:b (3.9) BS02 dna ? GO:0000781 ... P62805 38598631
    907372 8w9d:c (3.9) BS01 dna ? GO:0000786 ... P04908 38598631
    907373 8w9d:c (3.9) BS02 dna ? GO:0000786 ... P04908 38598631
    907374 8w9d:d (3.9) BS01 dna ? GO:0000786 ... O60814 38598631
    907375 8w9d:d (3.9) BS02 dna ? GO:0000786 ... O60814 38598631
    907376 8w9d:e (3.9) BS01 dna ? GO:0000786 ... P68431 38598631
    907377 8w9d:e (3.9) BS02 dna ? GO:0000786 ... P68431 38598631
    907378 8w9d:f (3.9) BS01 dna ? GO:0000781 ... P62805 38598631
    907379 8w9d:f (3.9) BS02 dna ? GO:0000781 ... P62805 38598631
    907380 8w9d:g (3.9) BS01 dna ? GO:0000786 ... P04908 38598631
    907381 8w9d:g (3.9) BS02 dna ? GO:0000786 ... P04908 38598631
    907382 8w9d:h (3.9) BS01 dna ? GO:0000786 ... O60814 38598631
    907383 8w9d:h (3.9) BS02 dna ? GO:0000786 ... O60814 38598631
    907384 8w9e:B (3.6) BS01 ZN 3.5.1.98 GO:0000082 ... P32561 38598631
    907385 8w9e:E (3.6) BS01 ZN ? GO:0000118 ... Q04779 38598631
    907386 8w9e:E (3.6) BS02 ZN ? GO:0000118 ... Q04779 38598631
    907387 8w9e:E (3.6) BS03 ZN ? GO:0000118 ... Q04779 38598631
    907388 8w9e:E (3.6) BS04 ZN ? GO:0000118 ... Q04779 38598631
    907389 8w9e:F (3.6) BS01 ZN ? GO:0000118 ... Q04779 38598631
    907390 8w9e:F (3.6) BS02 ZN ? GO:0000118 ... Q04779 38598631
    907391 8w9e:a (3.6) BS01 dna ? GO:0000786 ... P68431 38598631
    907392 8w9e:a (3.6) BS02 dna ? GO:0000786 ... P68431 38598631
    907393 8w9e:b (3.6) BS01 dna ? GO:0000781 ... P62805 38598631
    907394 8w9e:b (3.6) BS02 dna ? GO:0000781 ... P62805 38598631
    907395 8w9e:c (3.6) BS01 dna ? GO:0000786 ... P04908 38598631
    907396 8w9e:c (3.6) BS02 dna ? GO:0000786 ... P04908 38598631
    907397 8w9e:d (3.6) BS01 dna ? GO:0000786 ... O60814 38598631
    907398 8w9e:d (3.6) BS02 dna ? GO:0000786 ... O60814 38598631
    907399 8w9e:e (3.6) BS01 dna ? GO:0000786 ... P68431 38598631
    907400 8w9e:e (3.6) BS02 dna ? GO:0000786 ... P68431 38598631

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).