SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    907801 8xls:B (2.3) BS43 CLA N/A GO:0000287 ... A0T0M9 39480899
    907802 8xls:B (2.3) BS44 CLA N/A GO:0000287 ... A0T0M9 39480899
    907803 8xls:B (2.3) BS45 PQN N/A GO:0000287 ... A0T0M9 39480899
    907804 8xls:B (2.3) BS46 CLA N/A GO:0000287 ... A0T0M9 39480899
    907805 8xls:B (2.3) BS47 CLA N/A GO:0000287 ... A0T0M9 39480899
    907806 8xls:B (2.3) BS48 CLA N/A GO:0000287 ... A0T0M9 39480899
    907807 8xls:C (2.3) BS01 SF4 N/A GO:0009055 ... B8LEV1 39480899
    907808 8xls:C (2.3) BS02 SF4 N/A GO:0009055 ... B8LEV1 39480899
    907809 8xls:F (2.3) BS01 CLA N/A N/A A0T0V0 39480899
    907810 8xls:F (2.3) BS02 CLA N/A N/A A0T0V0 39480899
    907811 8xls:F (2.3) BS03 CLA N/A N/A A0T0V0 39480899
    907812 8xls:F (2.3) BS04 CLA N/A N/A A0T0V0 39480899
    907813 8xls:F (2.3) BS05 CLA N/A N/A A0T0V0 39480899
    907814 8xls:F (2.3) BS06 CLA N/A N/A A0T0V0 39480899
    907815 8xls:F (2.3) BS07 CLA N/A N/A A0T0V0 39480899
    907816 8xls:I (2.3) BS01 CLA N/A GO:0009507 ... A0T0S9 39480899
    907817 8xls:I (2.3) BS02 CLA N/A GO:0009507 ... A0T0S9 39480899
    907818 8xls:I (2.3) BS03 CLA N/A GO:0009507 ... A0T0S9 39480899
    907819 8xls:J (2.3) BS01 CLA N/A GO:0009507 ... A0T0V1 39480899
    907820 8xls:J (2.3) BS02 CLA N/A GO:0009507 ... A0T0V1 39480899
    907821 8xls:J (2.3) BS03 CLA N/A GO:0009507 ... A0T0V1 39480899
    907822 8xls:J (2.3) BS04 CLA N/A GO:0009507 ... A0T0V1 39480899
    907823 8xls:J (2.3) BS05 CLA N/A GO:0009507 ... A0T0V1 39480899
    907824 8xls:J (2.3) BS06 CLA N/A GO:0009507 ... A0T0V1 39480899
    907825 8xls:J (2.3) BS07 5X6 N/A GO:0009507 ... A0T0V1 39480899
    907826 8xls:L (2.3) BS01 CLA N/A GO:0009507 ... A0T0U5 39480899
    907827 8xls:L (2.3) BS02 CLA N/A GO:0009507 ... A0T0U5 39480899
    907828 8xls:L (2.3) BS03 CLA N/A GO:0009507 ... A0T0U5 39480899
    907829 8xls:L (2.3) BS04 CLA N/A GO:0009507 ... A0T0U5 39480899
    907830 8xls:L (2.3) BS05 CLA N/A GO:0009507 ... A0T0U5 39480899
    907831 8xls:L (2.3) BS06 CLA N/A GO:0009507 ... A0T0U5 39480899
    907832 8xls:L (2.3) BS07 CLA N/A GO:0009507 ... A0T0U5 39480899
    907833 8xls:L (2.3) BS08 CLA N/A GO:0009507 ... A0T0U5 39480899
    907834 8xls:L (2.3) BS09 CLA N/A GO:0009507 ... A0T0U5 39480899
    907835 8xls:L (2.3) BS10 CLA N/A GO:0009507 ... A0T0U5 39480899
    907836 8xls:M (2.3) BS01 CLA N/A GO:0009507 ... A0T0S1 39480899
    907837 8xls:M (2.3) BS02 A86 N/A GO:0009507 ... A0T0S1 39480899
    907838 8xls:u (2.3) BS01 CLA N/A N/A N/A 39480899
    907839 8xls:u (2.3) BS02 CLA N/A N/A N/A 39480899
    907840 8xlw:A (1.49) BS01 A1LV9 N/A N/A P93836 N/A
    907841 8xlw:A (1.49) BS02 CO N/A N/A P93836 N/A
    907842 8xlx:A (1.56) BS01 A1LWA N/A N/A P93836 N/A
    907843 8xlx:A (1.56) BS02 CO N/A N/A P93836 N/A
    907844 8xly:A (2.106) BS01 CO N/A N/A P93836 N/A
    907845 8xly:B (2.106) BS01 CO N/A N/A P93836 N/A
    907846 8xly:B (2.106) BS02 PHE N/A N/A P93836 N/A
    907847 8xlz:A (1.84) BS01 UDP N/A N/A A0A5D0ENI3 39265897
    907848 8xlz:A (1.84) BS02 MG N/A N/A A0A5D0ENI3 39265897
    907849 8xlz:B (1.84) BS01 UDP N/A N/A A0A5D0ENI3 39265897
    907850 8xlz:B (1.84) BS02 MG N/A N/A A0A5D0ENI3 39265897
    907851 8xm3:A (1.92) BS01 ATP N/A N/A Q2G1R9 38458107
    907852 8xm3:A (1.92) BS02 A1LV5 N/A N/A Q2G1R9 38458107
    907853 8xm3:A (1.92) BS03 A1LV5 N/A N/A Q2G1R9 38458107
    907854 8xm4:A (1.67) BS01 ATP N/A N/A Q2G1R9 38458107
    907855 8xm4:A (1.67) BS02 XC9 N/A N/A Q2G1R9 38458107
    907856 8xm6:A (3.48) BS01 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    907857 8xm6:A (3.48) BS02 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    907858 8xm6:A (3.48) BS03 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    907859 8xm6:A (3.48) BS04 AV0 N/A GO:0000139 ... Q9Y6M5 39390258
    907860 8xm6:A (3.48) BS05 Y01 N/A GO:0000139 ... Q9Y6M5 39390258
    907861 8xm6:A (3.48) BS06 Y01 N/A GO:0000139 ... Q9Y6M5 39390258
    907862 8xm6:B (3.48) BS01 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    907863 8xm6:B (3.48) BS02 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    907864 8xm6:B (3.48) BS03 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    907865 8xm6:B (3.48) BS04 AV0 N/A GO:0000139 ... Q9Y6M5 39390258
    907866 8xm6:B (3.48) BS05 Y01 N/A GO:0000139 ... Q9Y6M5 39390258
    907867 8xm6:B (3.48) BS06 Y01 N/A GO:0000139 ... Q9Y6M5 39390258
    907868 8xm7:D (4.91) BS01 MG N/A GO:0003924 ... P84095 38857861
    907869 8xm7:D (4.91) BS02 GTP N/A GO:0003924 ... P84095 38857861
    907870 8xma:A (2.65) BS01 AV0 N/A GO:0000139 ... Q9Y6M5 39390258
    907871 8xma:A (2.65) BS02 Y01 N/A GO:0000139 ... Q9Y6M5 39390258
    907872 8xma:A (2.65) BS03 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    907873 8xma:A (2.65) BS04 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    907874 8xma:A (2.65) BS05 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    907875 8xma:A (2.65) BS06 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    907876 8xma:A (2.65) BS07 AV0 N/A GO:0000139 ... Q9Y6M5 39390258
    907877 8xma:B (2.65) BS01 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    907878 8xma:B (2.65) BS02 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    907879 8xma:B (2.65) BS03 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    907880 8xma:B (2.65) BS04 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    907881 8xma:B (2.65) BS05 AV0 N/A GO:0000139 ... Q9Y6M5 39390258
    907882 8xma:B (2.65) BS06 Y01 N/A GO:0000139 ... Q9Y6M5 39390258
    907883 8xma:B (2.65) BS07 Y01 N/A GO:0000139 ... Q9Y6M5 39390258
    907884 8xma:B (2.65) BS08 AV0 N/A GO:0000139 ... Q9Y6M5 39390258
    907885 8xmb:A (3.4) BS01 rna N/A GO:0000418 ... Q9LQ02 39178250
    907886 8xmb:A (3.4) BS02 MG N/A GO:0000418 ... Q9LQ02 39178250
    907887 8xmb:A (3.4) BS03 ZN N/A GO:0000418 ... Q9LQ02 39178250
    907888 8xmb:A (3.4) BS04 ZN N/A GO:0000418 ... Q9LQ02 39178250
    907889 8xmb:B (3.4) BS01 dna N/A GO:0000418 ... Q9LK40 39178250
    907890 8xmb:B (3.4) BS02 rna N/A GO:0000418 ... Q9LK40 39178250
    907891 8xmb:B (3.4) BS03 dna N/A GO:0000418 ... Q9LK40 39178250
    907892 8xmb:B (3.4) BS04 ZN N/A GO:0000418 ... Q9LK40 39178250
    907893 8xmb:B (3.4) BS05 GTP N/A GO:0000418 ... Q9LK40 39178250
    907894 8xmb:C (3.4) BS01 ZN N/A GO:0000418 ... Q39211 39178250
    907895 8xmb:I (3.4) BS01 ZN N/A GO:0000419 ... Q6NLH0 39178250
    907896 8xmb:I (3.4) BS02 ZN N/A GO:0000419 ... Q6NLH0 39178250
    907897 8xmb:L (3.4) BS01 ZN N/A GO:0000418 ... Q9FLM8 39178250
    907898 8xmc:A (3.1) BS01 dna N/A GO:0000418 ... Q9LQ02 39178250
    907899 8xmc:A (3.1) BS02 rna N/A GO:0000418 ... Q9LQ02 39178250
    907900 8xmc:A (3.1) BS03 dna N/A GO:0000418 ... Q9LQ02 39178250
    907901 8xmc:A (3.1) BS04 ZN N/A GO:0000418 ... Q9LQ02 39178250
    907902 8xmc:A (3.1) BS05 MG N/A GO:0000418 ... Q9LQ02 39178250
    907903 8xmc:A (3.1) BS06 ZN N/A GO:0000418 ... Q9LQ02 39178250
    907904 8xmc:A (3.1) BS07 ZN N/A GO:0000418 ... Q9LQ02 39178250
    907905 8xmc:B (3.1) BS01 rna N/A GO:0000418 ... Q9LK40 39178250
    907906 8xmc:B (3.1) BS02 dna N/A GO:0000418 ... Q9LK40 39178250
    907907 8xmc:B (3.1) BS03 ZN N/A GO:0000418 ... Q9LK40 39178250
    907908 8xmc:C (3.1) BS01 ZN N/A GO:0000418 ... Q39211 39178250
    907909 8xmc:E (3.1) BS01 dna N/A GO:0000418 ... O81098 39178250
    907910 8xmc:I (3.1) BS01 ZN N/A GO:0000419 ... Q6NLH0 39178250
    907911 8xmc:J (3.1) BS01 ZN N/A GO:0000418 ... Q8LFJ6 39178250
    907912 8xmc:L (3.1) BS01 ZN N/A GO:0000418 ... Q9FLM8 39178250
    907913 8xmd:A (3.4) BS01 dna N/A GO:0000418 ... Q9LQ02 39178250
    907914 8xmd:A (3.4) BS02 rna N/A GO:0000418 ... Q9LQ02 39178250
    907915 8xmd:A (3.4) BS03 dna N/A GO:0000418 ... Q9LQ02 39178250
    907916 8xmd:A (3.4) BS04 ZN N/A GO:0000418 ... Q9LQ02 39178250
    907917 8xmd:A (3.4) BS05 MG N/A GO:0000418 ... Q9LQ02 39178250
    907918 8xmd:A (3.4) BS06 ZN N/A GO:0000418 ... Q9LQ02 39178250
    907919 8xmd:A (3.4) BS07 ZN N/A GO:0000418 ... Q9LQ02 39178250
    907920 8xmd:B (3.4) BS01 rna N/A GO:0000418 ... Q9LK40 39178250
    907921 8xmd:B (3.4) BS02 dna N/A GO:0000418 ... Q9LK40 39178250
    907922 8xmd:B (3.4) BS03 ZN N/A GO:0000418 ... Q9LK40 39178250
    907923 8xmd:C (3.4) BS01 ZN N/A GO:0000418 ... Q39211 39178250
    907924 8xmd:E (3.4) BS01 dna N/A GO:0000418 ... O81098 39178250
    907925 8xmd:I (3.4) BS01 ZN N/A GO:0000419 ... Q6NLH0 39178250
    907926 8xmd:L (3.4) BS01 ZN N/A GO:0000418 ... Q9FLM8 39178250
    907927 8xme:A (3.1) BS01 rna N/A GO:0000418 ... Q9LQ02 39178250
    907928 8xme:A (3.1) BS02 dna N/A GO:0000418 ... Q9LQ02 39178250
    907929 8xme:A (3.1) BS03 ZN N/A GO:0000418 ... Q9LQ02 39178250
    907930 8xme:A (3.1) BS04 MG N/A GO:0000418 ... Q9LQ02 39178250
    907931 8xme:A (3.1) BS05 ZN N/A GO:0000418 ... Q9LQ02 39178250
    907932 8xme:A (3.1) BS06 ZN N/A GO:0000418 ... Q9LQ02 39178250
    907933 8xme:B (3.1) BS01 dna N/A GO:0000418 ... Q9LK40 39178250
    907934 8xme:B (3.1) BS02 rna N/A GO:0000418 ... Q9LK40 39178250
    907935 8xme:B (3.1) BS03 dna N/A GO:0000418 ... Q9LK40 39178250
    907936 8xme:E (3.1) BS01 dna N/A GO:0000418 ... O81098 39178250
    907937 8xme:I (3.1) BS01 ZN N/A GO:0000419 ... Q6NLH0 39178250
    907938 8xme:L (3.1) BS01 ZN N/A GO:0000418 ... Q9FLM8 39178250
    907939 8xmf:A (3.64) BS01 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    907940 8xmf:A (3.64) BS02 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    907941 8xmf:A (3.64) BS03 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    907942 8xmf:A (3.64) BS04 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    907943 8xmf:A (3.64) BS05 AV0 N/A GO:0000139 ... Q9Y6M5 39390258
    907944 8xmf:B (3.64) BS01 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    907945 8xmf:B (3.64) BS02 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    907946 8xmf:B (3.64) BS03 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    907947 8xmf:B (3.64) BS04 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    907948 8xmf:B (3.64) BS05 AV0 N/A GO:0000139 ... Q9Y6M5 39390258
    907949 8xmf:B (3.64) BS06 Y01 N/A GO:0000139 ... Q9Y6M5 39390258
    907950 8xmh:A (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    907951 8xmh:B (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    907952 8xmh:C (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    907953 8xmh:D (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    907954 8xmh:E (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    907955 8xmh:F (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    907956 8xmh:G (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    907957 8xmh:H (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    907958 8xmi:A (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    907959 8xmi:B (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    907960 8xmi:C (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    907961 8xmi:D (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    907962 8xmi:E (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    907963 8xmi:F (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    907964 8xmi:G (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    907965 8xmi:H (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    907966 8xmj:A (4.18) BS01 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    907967 8xmj:A (4.18) BS02 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    907968 8xmj:A (4.18) BS03 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    907969 8xmj:A (4.18) BS04 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    907970 8xmj:B (4.18) BS01 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    907971 8xmj:B (4.18) BS02 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    907972 8xmj:B (4.18) BS03 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    907973 8xmj:B (4.18) BS04 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    907974 8xmj:B (4.18) BS05 AV0 N/A GO:0000139 ... Q9Y6M5 39390258
    907975 8xmk:D (3.03) BS01 CA N/A N/A Q86VB7 N/A
    907976 8xmk:D (3.03) BS02 CA N/A N/A Q86VB7 N/A
    907977 8xmk:D (3.03) BS03 CA N/A N/A Q86VB7 N/A
    907978 8xmk:D (3.03) BS04 CA N/A N/A Q86VB7 N/A
    907979 8xmk:D (3.03) BS05 CA N/A N/A Q86VB7 N/A
    907980 8xmk:D (3.03) BS06 CA N/A N/A Q86VB7 N/A
    907981 8xmk:E (3.03) BS01 CA N/A N/A Q86VB7 N/A
    907982 8xmk:E (3.03) BS02 CA N/A N/A Q86VB7 N/A
    907983 8xmk:E (3.03) BS03 CA N/A N/A Q86VB7 N/A
    907984 8xmk:E (3.03) BS04 CA N/A N/A Q86VB7 N/A
    907985 8xmk:E (3.03) BS05 CA N/A N/A Q86VB7 N/A
    907986 8xmk:F (3.03) BS01 CA N/A N/A Q86VB7 N/A
    907987 8xmk:F (3.03) BS02 CA N/A N/A Q86VB7 N/A
    907988 8xmk:F (3.03) BS03 CA N/A N/A Q86VB7 N/A
    907989 8xmk:F (3.03) BS04 CA N/A N/A Q86VB7 N/A
    907990 8xmk:F (3.03) BS05 CA N/A N/A Q86VB7 N/A
    907991 8xmk:F (3.03) BS06 CA N/A N/A Q86VB7 N/A
    907992 8xmm:A (2.89) BS01 CLR ? GO:0001518 ... Q15858 38381792
    907993 8xmm:A (2.89) BS02 LPE ? GO:0001518 ... Q15858 38381792
    907994 8xmm:A (2.89) BS03 1PW ? GO:0001518 ... Q15858 38381792
    907995 8xmm:A (2.89) BS04 LPE ? GO:0001518 ... Q15858 38381792
    907996 8xmm:A (2.89) BS05 LPE ? GO:0001518 ... Q15858 38381792
    907997 8xmm:A (2.89) BS06 LPE ? GO:0001518 ... Q15858 38381792
    907998 8xmm:A (2.89) BS07 LPE ? GO:0001518 ... Q15858 38381792
    907999 8xmm:A (2.89) BS08 LPE ? GO:0001518 ... Q15858 38381792
    908000 8xmm:A (2.89) BS09 P5S ? GO:0001518 ... Q15858 38381792

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).