SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    908601 8xpt:A (3.35) BS05 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    908602 8xpt:B (3.35) BS01 SAH 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    908603 8xpt:B (3.35) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    908604 8xpt:B (3.35) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    908605 8xpt:B (3.35) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    908606 8xpt:B (3.35) BS05 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    908607 8xpt:C (3.35) BS01 SAH 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    908608 8xpt:C (3.35) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    908609 8xpt:C (3.35) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    908610 8xpt:C (3.35) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    908611 8xpt:C (3.35) BS05 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    908612 8xpt:D (3.35) BS01 SAH 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    908613 8xpt:D (3.35) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    908614 8xpt:D (3.35) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    908615 8xpt:D (3.35) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    908616 8xpt:D (3.35) BS05 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    908617 8xpu:B (3.3) BS01 VRW N/A GO:0002720 ... Q01650 38956038
    908618 8xpv:A (1.55) BS01 4Z5 2.7.10.1 GO:0004672 ... P29317 N/A
    908619 8xq0:A (1.95) BS01 A1LV4 N/A N/A P43405 N/A
    908620 8xq0:B (1.95) BS01 A1LV4 N/A N/A P43405 N/A
    908621 8xq0:C (1.95) BS01 A1LV4 N/A N/A P43405 N/A
    908622 8xq0:D (1.95) BS01 A1LV4 N/A N/A P43405 N/A
    908623 8xq1:A (1.5) BS01 A1LV6 N/A N/A P43405 N/A
    908624 8xq1:B (1.5) BS01 A1LV6 N/A N/A P43405 N/A
    908625 8xq2:A (1.8) BS01 A1LV7 N/A N/A P43405 N/A
    908626 8xq2:B (1.8) BS01 A1LV7 N/A N/A P43405 N/A
    908627 8xq7:A (3.15) BS01 CMP N/A GO:0005886 ... A3RL54 38957574
    908628 8xq7:B (3.15) BS01 CMP N/A GO:0005886 ... A3RL54 38957574
    908629 8xq8:A (3.35) BS01 CMP N/A GO:0005886 ... A3RL54 38957574
    908630 8xqc:A (3.25) BS01 dna N/A N/A P26358 N/A
    908631 8xqc:A (3.25) BS02 dna N/A N/A P26358 N/A
    908632 8xqc:A (3.25) BS03 SAH N/A N/A P26358 N/A
    908633 8xqc:A (3.25) BS04 ZN N/A N/A P26358 N/A
    908634 8xqc:A (3.25) BS05 ZN N/A N/A P26358 N/A
    908635 8xqe:R (3.48) BS01 peptide N/A N/A P0ABE7
    P35414
    39747115
    908636 8xqf:R (3.13) BS01 peptide N/A N/A P0ABE7
    P35414
    39747115
    908637 8xqi:A (3.25) BS01 CLR N/A N/A P0ABE7
    P35414
    39747115
    908638 8xqi:B (3.25) BS01 CLR N/A N/A P0ABE7
    P35414
    39747115
    908639 8xqi:B (3.25) BS02 CLR N/A N/A P0ABE7
    P35414
    39747115
    908640 8xqj:C (2.95) BS01 CLR N/A N/A P0ABE7
    P35414
    39747115
    908641 8xqj:C (2.95) BS02 CLR N/A N/A P0ABE7
    P35414
    39747115
    908642 8xqj:C (2.95) BS03 CLR N/A N/A P0ABE7
    P35414
    39747115
    908643 8xqj:D (2.95) BS01 CLR N/A N/A P0ABE7
    P35414
    39747115
    908644 8xqj:D (2.95) BS02 CLR N/A N/A P0ABE7
    P35414
    39747115
    908645 8xql:A (2.99) BS01 GOQ N/A GO:0003924 ... P63092 38776963
    908646 8xql:R (2.99) BS01 GOQ N/A GO:0001580 ... Q59310
    Q9NYV8
    38776963
    908647 8xql:R (2.99) BS02 GOQ N/A GO:0001580 ... Q59310
    Q9NYV8
    38776963
    908648 8xql:R (2.99) BS03 CLR N/A GO:0001580 ... Q59310
    Q9NYV8
    38776963
    908649 8xqn:R (3.05) BS01 GOQ N/A GO:0001580 ... Q59310
    Q9NYV8
    38776963
    908650 8xqn:R (3.05) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8
    38776963
    908651 8xqo:R (2.77) BS01 GOQ N/A GO:0001580 ... Q59310
    Q9NYV8
    38776963
    908652 8xqo:R (2.77) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8
    38776963
    908653 8xqp:R (3.29) BS01 GOQ N/A GO:0001580 ... Q59310
    Q9NYV8
    38776963
    908654 8xqp:R (3.29) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8
    38776963
    908655 8xqr:R (3.2) BS01 FLF N/A GO:0001580 ... Q59310
    Q9NYV8
    38776963
    908656 8xqs:R (3.3) BS01 FLF N/A GO:0001580 ... Q59310
    Q9NYV8
    38776963
    908657 8xqs:R (3.3) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8
    38776963
    908658 8xqt:R (2.94) BS01 CLR N/A GO:0001580 ... Q59310
    Q9NYV8
    38776963
    908659 8xqt:R (2.94) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8
    38776963
    908660 8xqv:A (2.698) BS01 CO N/A N/A P93836 N/A
    908661 8xqv:A (2.698) BS02 A1LWU N/A N/A P93836 N/A
    908662 8xqv:B (2.698) BS01 CO N/A N/A P93836 N/A
    908663 8xqv:B (2.698) BS02 A1LWU N/A N/A P93836 N/A
    908664 8xqw:A (2.9) BS01 ANP N/A GO:0004176 ... N/A 39197449
    908665 8xqw:C (2.9) BS01 ANP N/A GO:0004176 ... N/A 39197449
    908666 8xqw:D (2.9) BS01 A1LXL N/A GO:0009507 ... A0A218N8A7 39197449
    908667 8xqw:E (2.9) BS01 ANP N/A GO:0004176 ... N/A 39197449
    908668 8xqw:F (2.9) BS01 ANP N/A GO:0004176 ... N/A 39197449
    908669 8xqw:F (2.9) BS02 ANP N/A GO:0004176 ... N/A 39197449
    908670 8xqw:I (2.9) BS01 Y01 N/A N/A N/A 39197449
    908671 8xqw:M (2.9) BS01 Y01 N/A GO:0016020 ... A0A2K3DQ46 39197449
    908672 8xqw:P (2.9) BS01 A1LXL N/A N/A A0A2K3DHV6 39197449
    908673 8xqw:P (2.9) BS02 A1LXL N/A N/A A0A2K3DHV6 39197449
    908674 8xqw:R (2.9) BS01 ZN N/A N/A A0A2K3DGW6 39197449
    908675 8xqw:R (2.9) BS02 ZN N/A N/A A0A2K3DGW6 39197449
    908676 8xqx:I (2.8) BS01 Y01 N/A N/A N/A 39197449
    908677 8xqx:M (2.8) BS01 Y01 N/A GO:0016020 ... A0A2K3DQ46 39197449
    908678 8xqx:P (2.8) BS01 A1LXL N/A N/A A0A2K3DHV6 39197449
    908679 8xqx:P (2.8) BS02 A1LXL N/A N/A A0A2K3DHV6 39197449
    908680 8xqx:R (2.8) BS01 ZN N/A N/A A0A2K3DGW6 39197449
    908681 8xqx:R (2.8) BS02 ZN N/A N/A A0A2K3DGW6 39197449
    908682 8xqy:A (2.003) BS01 A1LWP N/A N/A P93836 N/A
    908683 8xqy:A (2.003) BS02 CO N/A N/A P93836 N/A
    908684 8xqz:A (1.783) BS01 CO N/A N/A P93836 N/A
    908685 8xqz:A (1.783) BS02 A1LWQ N/A N/A P93836 N/A
    908686 8xr0:A (2.002) BS01 CO N/A N/A P93836 N/A
    908687 8xr0:A (2.002) BS02 A1LWR N/A N/A P93836 N/A
    908688 8xr4:A (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    908689 8xr4:B (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    908690 8xr4:C (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    908691 8xr4:D (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    908692 8xr4:E (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    908693 8xr4:F (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    908694 8xr4:G (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    908695 8xr4:H (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    908696 8xr6:0 (2.53) BS01 CLA N/A GO:0009765 ... N/A 38866834
    908697 8xr6:0 (2.53) BS02 CLA N/A GO:0009765 ... N/A 38866834
    908698 8xr6:0 (2.53) BS03 CLA N/A GO:0009765 ... N/A 38866834
    908699 8xr6:0 (2.53) BS04 CLA N/A GO:0009765 ... N/A 38866834
    908700 8xr6:0 (2.53) BS05 KC2 N/A GO:0009765 ... N/A 38866834
    908701 8xr6:0 (2.53) BS06 CLA N/A GO:0009765 ... N/A 38866834
    908702 8xr6:0 (2.53) BS07 CLA N/A GO:0009765 ... N/A 38866834
    908703 8xr6:0 (2.53) BS08 CLA N/A GO:0009765 ... N/A 38866834
    908704 8xr6:0 (2.53) BS09 CLA N/A GO:0009765 ... N/A 38866834
    908705 8xr6:0 (2.53) BS10 CLA N/A GO:0009765 ... N/A 38866834
    908706 8xr6:0 (2.53) BS11 CLA N/A GO:0009765 ... N/A 38866834
    908707 8xr6:0 (2.53) BS12 8CT N/A GO:0009765 ... N/A 38866834
    908708 8xr6:0 (2.53) BS13 II0 N/A GO:0009765 ... N/A 38866834
    908709 8xr6:0 (2.53) BS14 II0 N/A GO:0009765 ... N/A 38866834
    908710 8xr6:0 (2.53) BS15 II0 N/A GO:0009765 ... N/A 38866834
    908711 8xr6:0 (2.53) BS16 II0 N/A GO:0009765 ... N/A 38866834
    908712 8xr6:0 (2.53) BS17 CLA N/A GO:0009765 ... N/A 38866834
    908713 8xr6:1 (2.53) BS01 CLA N/A GO:0009765 ... N/A 38866834
    908714 8xr6:1 (2.53) BS02 CLA N/A GO:0009765 ... N/A 38866834
    908715 8xr6:1 (2.53) BS03 CLA N/A GO:0009765 ... N/A 38866834
    908716 8xr6:1 (2.53) BS04 CLA N/A GO:0009765 ... N/A 38866834
    908717 8xr6:1 (2.53) BS05 CLA N/A GO:0009765 ... N/A 38866834
    908718 8xr6:1 (2.53) BS06 CLA N/A GO:0009765 ... N/A 38866834
    908719 8xr6:1 (2.53) BS07 CLA N/A GO:0009765 ... N/A 38866834
    908720 8xr6:1 (2.53) BS08 CLA N/A GO:0009765 ... N/A 38866834
    908721 8xr6:1 (2.53) BS09 CLA N/A GO:0009765 ... N/A 38866834
    908722 8xr6:1 (2.53) BS10 KC2 N/A GO:0009765 ... N/A 38866834
    908723 8xr6:1 (2.53) BS11 KC2 N/A GO:0009765 ... N/A 38866834
    908724 8xr6:1 (2.53) BS12 8CT N/A GO:0009765 ... N/A 38866834
    908725 8xr6:1 (2.53) BS13 II0 N/A GO:0009765 ... N/A 38866834
    908726 8xr6:1 (2.53) BS14 II0 N/A GO:0009765 ... N/A 38866834
    908727 8xr6:1 (2.53) BS15 II0 N/A GO:0009765 ... N/A 38866834
    908728 8xr6:1 (2.53) BS16 II0 N/A GO:0009765 ... N/A 38866834
    908729 8xr6:1 (2.53) BS17 CLA N/A GO:0009765 ... N/A 38866834
    908730 8xr6:2 (2.53) BS01 CLA N/A GO:0009765 ... N/A 38866834
    908731 8xr6:2 (2.53) BS02 CLA N/A GO:0009765 ... N/A 38866834
    908732 8xr6:2 (2.53) BS03 8CT N/A GO:0009765 ... N/A 38866834
    908733 8xr6:2 (2.53) BS04 II0 N/A GO:0009765 ... N/A 38866834
    908734 8xr6:2 (2.53) BS05 CLA N/A GO:0009765 ... N/A 38866834
    908735 8xr6:2 (2.53) BS06 CLA N/A GO:0009765 ... N/A 38866834
    908736 8xr6:2 (2.53) BS07 CLA N/A GO:0009765 ... N/A 38866834
    908737 8xr6:2 (2.53) BS08 CLA N/A GO:0009765 ... N/A 38866834
    908738 8xr6:2 (2.53) BS09 CLA N/A GO:0009765 ... N/A 38866834
    908739 8xr6:2 (2.53) BS10 CLA N/A GO:0009765 ... N/A 38866834
    908740 8xr6:2 (2.53) BS11 CLA N/A GO:0009765 ... N/A 38866834
    908741 8xr6:2 (2.53) BS12 CLA N/A GO:0009765 ... N/A 38866834
    908742 8xr6:2 (2.53) BS13 KC2 N/A GO:0009765 ... N/A 38866834
    908743 8xr6:2 (2.53) BS14 CLA N/A GO:0009765 ... N/A 38866834
    908744 8xr6:2 (2.53) BS15 II0 N/A GO:0009765 ... N/A 38866834
    908745 8xr6:2 (2.53) BS16 II0 N/A GO:0009765 ... N/A 38866834
    908746 8xr6:2 (2.53) BS17 II0 N/A GO:0009765 ... N/A 38866834
    908747 8xr6:2 (2.53) BS18 IHT N/A GO:0009765 ... N/A 38866834
    908748 8xr6:2 (2.53) BS19 II0 N/A GO:0009765 ... N/A 38866834
    908749 8xr6:2 (2.53) BS20 CLA N/A GO:0009765 ... N/A 38866834
    908750 8xr6:2 (2.53) BS21 CLA N/A GO:0009765 ... N/A 38866834
    908751 8xr6:2 (2.53) BS22 II0 N/A GO:0009765 ... N/A 38866834
    908752 8xr6:2 (2.53) BS23 CLA N/A GO:0009765 ... N/A 38866834
    908753 8xr6:2 (2.53) BS24 CLA N/A GO:0009765 ... N/A 38866834
    908754 8xr6:2 (2.53) BS25 CLA N/A GO:0009765 ... N/A 38866834
    908755 8xr6:3 (2.53) BS01 CLA N/A GO:0009765 ... N/A 38866834
    908756 8xr6:3 (2.53) BS02 IHT N/A GO:0009765 ... N/A 38866834
    908757 8xr6:3 (2.53) BS03 II0 N/A GO:0009765 ... N/A 38866834
    908758 8xr6:3 (2.53) BS04 CLA N/A GO:0009765 ... N/A 38866834
    908759 8xr6:3 (2.53) BS05 CLA N/A GO:0009765 ... N/A 38866834
    908760 8xr6:3 (2.53) BS06 CLA N/A GO:0009765 ... N/A 38866834
    908761 8xr6:3 (2.53) BS07 CLA N/A GO:0009765 ... N/A 38866834
    908762 8xr6:3 (2.53) BS08 CLA N/A GO:0009765 ... N/A 38866834
    908763 8xr6:3 (2.53) BS09 CLA N/A GO:0009765 ... N/A 38866834
    908764 8xr6:3 (2.53) BS10 CLA N/A GO:0009765 ... N/A 38866834
    908765 8xr6:3 (2.53) BS11 CLA N/A GO:0009765 ... N/A 38866834
    908766 8xr6:3 (2.53) BS12 KC2 N/A GO:0009765 ... N/A 38866834
    908767 8xr6:3 (2.53) BS13 CLA N/A GO:0009765 ... N/A 38866834
    908768 8xr6:3 (2.53) BS14 CLA N/A GO:0009765 ... N/A 38866834
    908769 8xr6:3 (2.53) BS15 CLA N/A GO:0009765 ... N/A 38866834
    908770 8xr6:3 (2.53) BS16 CLA N/A GO:0009765 ... N/A 38866834
    908771 8xr6:3 (2.53) BS17 II0 N/A GO:0009765 ... N/A 38866834
    908772 8xr6:3 (2.53) BS18 II0 N/A GO:0009765 ... N/A 38866834
    908773 8xr6:3 (2.53) BS19 II0 N/A GO:0009765 ... N/A 38866834
    908774 8xr6:3 (2.53) BS20 II0 N/A GO:0009765 ... N/A 38866834
    908775 8xr6:3 (2.53) BS21 IHT N/A GO:0009765 ... N/A 38866834
    908776 8xr6:4 (2.53) BS01 CLA N/A GO:0009765 ... N/A 38866834
    908777 8xr6:4 (2.53) BS02 CLA N/A GO:0009765 ... N/A 38866834
    908778 8xr6:4 (2.53) BS03 CLA N/A GO:0009765 ... N/A 38866834
    908779 8xr6:4 (2.53) BS04 CLA N/A GO:0009765 ... N/A 38866834
    908780 8xr6:4 (2.53) BS05 KC2 N/A GO:0009765 ... N/A 38866834
    908781 8xr6:4 (2.53) BS06 CLA N/A GO:0009765 ... N/A 38866834
    908782 8xr6:4 (2.53) BS07 CLA N/A GO:0009765 ... N/A 38866834
    908783 8xr6:4 (2.53) BS08 CLA N/A GO:0009765 ... N/A 38866834
    908784 8xr6:4 (2.53) BS09 CLA N/A GO:0009765 ... N/A 38866834
    908785 8xr6:4 (2.53) BS10 CLA N/A GO:0009765 ... N/A 38866834
    908786 8xr6:4 (2.53) BS11 8CT N/A GO:0009765 ... N/A 38866834
    908787 8xr6:4 (2.53) BS12 II0 N/A GO:0009765 ... N/A 38866834
    908788 8xr6:4 (2.53) BS13 II0 N/A GO:0009765 ... N/A 38866834
    908789 8xr6:4 (2.53) BS14 II0 N/A GO:0009765 ... N/A 38866834
    908790 8xr6:4 (2.53) BS15 II0 N/A GO:0009765 ... N/A 38866834
    908791 8xr6:4 (2.53) BS16 CLA N/A GO:0009765 ... N/A 38866834
    908792 8xr6:4 (2.53) BS17 II0 N/A GO:0009765 ... N/A 38866834
    908793 8xr6:4 (2.53) BS18 CLA N/A GO:0009765 ... N/A 38866834
    908794 8xr6:5 (2.53) BS01 CLA N/A GO:0009765 ... N/A 38866834
    908795 8xr6:5 (2.53) BS02 II0 N/A GO:0009765 ... N/A 38866834
    908796 8xr6:5 (2.53) BS03 CLA N/A GO:0009765 ... N/A 38866834
    908797 8xr6:5 (2.53) BS04 CLA N/A GO:0009765 ... N/A 38866834
    908798 8xr6:5 (2.53) BS05 CLA N/A GO:0009765 ... N/A 38866834
    908799 8xr6:5 (2.53) BS06 CLA N/A GO:0009765 ... N/A 38866834
    908800 8xr6:5 (2.53) BS07 CLA N/A GO:0009765 ... N/A 38866834

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).