SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    909001 8xr6:b (2.53) BS09 CLA N/A GO:0009507 ... A0A222AIE3 38866834
    909002 8xr6:b (2.53) BS10 CLA N/A GO:0009507 ... A0A222AIE3 38866834
    909003 8xr6:b (2.53) BS11 CLA N/A GO:0009507 ... A0A222AIE3 38866834
    909004 8xr6:b (2.53) BS12 CLA N/A GO:0009507 ... A0A222AIE3 38866834
    909005 8xr6:b (2.53) BS13 CLA N/A GO:0009507 ... A0A222AIE3 38866834
    909006 8xr6:b (2.53) BS14 CLA N/A GO:0009507 ... A0A222AIE3 38866834
    909007 8xr6:b (2.53) BS15 CLA N/A GO:0009507 ... A0A222AIE3 38866834
    909008 8xr6:b (2.53) BS16 CLA N/A GO:0009507 ... A0A222AIE3 38866834
    909009 8xr6:b (2.53) BS17 8CT N/A GO:0009507 ... A0A222AIE3 38866834
    909010 8xr6:b (2.53) BS18 8CT N/A GO:0009507 ... A0A222AIE3 38866834
    909011 8xr6:b (2.53) BS19 8CT N/A GO:0009507 ... A0A222AIE3 38866834
    909012 8xr6:c (2.53) BS01 OEX N/A GO:0005737 ... A0A222AI36 38866834
    909013 8xr6:c (2.53) BS02 CLA N/A GO:0005737 ... A0A222AI36 38866834
    909014 8xr6:c (2.53) BS03 CLA N/A GO:0005737 ... A0A222AI36 38866834
    909015 8xr6:c (2.53) BS04 CLA N/A GO:0005737 ... A0A222AI36 38866834
    909016 8xr6:c (2.53) BS05 CLA N/A GO:0005737 ... A0A222AI36 38866834
    909017 8xr6:c (2.53) BS06 CLA N/A GO:0005737 ... A0A222AI36 38866834
    909018 8xr6:c (2.53) BS07 CLA N/A GO:0005737 ... A0A222AI36 38866834
    909019 8xr6:c (2.53) BS08 CLA N/A GO:0005737 ... A0A222AI36 38866834
    909020 8xr6:c (2.53) BS09 CLA N/A GO:0005737 ... A0A222AI36 38866834
    909021 8xr6:c (2.53) BS10 CLA N/A GO:0005737 ... A0A222AI36 38866834
    909022 8xr6:c (2.53) BS11 CLA N/A GO:0005737 ... A0A222AI36 38866834
    909023 8xr6:c (2.53) BS12 CLA N/A GO:0005737 ... A0A222AI36 38866834
    909024 8xr6:c (2.53) BS13 CLA N/A GO:0005737 ... A0A222AI36 38866834
    909025 8xr6:c (2.53) BS14 CLA N/A GO:0005737 ... A0A222AI36 38866834
    909026 8xr6:c (2.53) BS15 8CT N/A GO:0005737 ... A0A222AI36 38866834
    909027 8xr6:c (2.53) BS16 8CT N/A GO:0005737 ... A0A222AI36 38866834
    909028 8xr6:c (2.53) BS17 8CT N/A GO:0005737 ... A0A222AI36 38866834
    909029 8xr6:d (2.53) BS01 peptide N/A GO:0005506 ... A0A222AI37 38866834
    909030 8xr6:d (2.53) BS02 FE2 N/A GO:0005506 ... A0A222AI37 38866834
    909031 8xr6:d (2.53) BS03 BCT N/A GO:0005506 ... A0A222AI37 38866834
    909032 8xr6:d (2.53) BS04 CLA N/A GO:0005506 ... A0A222AI37 38866834
    909033 8xr6:d (2.53) BS05 CLA N/A GO:0005506 ... A0A222AI37 38866834
    909034 8xr6:d (2.53) BS06 PHO N/A GO:0005506 ... A0A222AI37 38866834
    909035 8xr6:d (2.53) BS07 CLA N/A GO:0005506 ... A0A222AI37 38866834
    909036 8xr6:d (2.53) BS08 CLA N/A GO:0005506 ... A0A222AI37 38866834
    909037 8xr6:d (2.53) BS09 PHO N/A GO:0005506 ... A0A222AI37 38866834
    909038 8xr6:d (2.53) BS10 CLA N/A GO:0005506 ... A0A222AI37 38866834
    909039 8xr6:d (2.53) BS11 CLA N/A GO:0005506 ... A0A222AI37 38866834
    909040 8xr6:d (2.53) BS12 8CT N/A GO:0005506 ... A0A222AI37 38866834
    909041 8xr6:e (2.53) BS01 peptide N/A GO:0005506 ... A0A222AI74 38866834
    909042 8xr6:e (2.53) BS02 HEM N/A GO:0005506 ... A0A222AI74 38866834
    909043 8xr6:g (2.53) BS01 CLA N/A GO:0009765 ... N/A 38866834
    909044 8xr6:g (2.53) BS02 II0 N/A GO:0009765 ... N/A 38866834
    909045 8xr6:g (2.53) BS03 CLA N/A GO:0009765 ... N/A 38866834
    909046 8xr6:g (2.53) BS04 CLA N/A GO:0009765 ... N/A 38866834
    909047 8xr6:g (2.53) BS05 CLA N/A GO:0009765 ... N/A 38866834
    909048 8xr6:g (2.53) BS06 CLA N/A GO:0009765 ... N/A 38866834
    909049 8xr6:g (2.53) BS07 CLA N/A GO:0009765 ... N/A 38866834
    909050 8xr6:g (2.53) BS08 CLA N/A GO:0009765 ... N/A 38866834
    909051 8xr6:g (2.53) BS09 CLA N/A GO:0009765 ... N/A 38866834
    909052 8xr6:g (2.53) BS10 CLA N/A GO:0009765 ... N/A 38866834
    909053 8xr6:g (2.53) BS11 KC2 N/A GO:0009765 ... N/A 38866834
    909054 8xr6:g (2.53) BS12 CLA N/A GO:0009765 ... N/A 38866834
    909055 8xr6:g (2.53) BS13 CLA N/A GO:0009765 ... N/A 38866834
    909056 8xr6:g (2.53) BS14 II0 N/A GO:0009765 ... N/A 38866834
    909057 8xr6:g (2.53) BS15 II0 N/A GO:0009765 ... N/A 38866834
    909058 8xr6:g (2.53) BS16 II0 N/A GO:0009765 ... N/A 38866834
    909059 8xr6:g (2.53) BS17 IHT N/A GO:0009765 ... N/A 38866834
    909060 8xr6:g (2.53) BS18 II0 N/A GO:0009765 ... N/A 38866834
    909061 8xr6:h (2.53) BS01 CLA N/A GO:0009507 ... A0A222AIE4 38866834
    909062 8xr6:h (2.53) BS02 CLA N/A GO:0009507 ... A0A222AIE4 38866834
    909063 8xr6:h (2.53) BS03 CLA N/A GO:0009507 ... A0A222AIE4 38866834
    909064 8xr6:h (2.53) BS04 CLA N/A GO:0009507 ... A0A222AIE4 38866834
    909065 8xr6:h (2.53) BS05 CLA N/A GO:0009507 ... A0A222AIE4 38866834
    909066 8xr6:h (2.53) BS06 8CT N/A GO:0009507 ... A0A222AIE4 38866834
    909067 8xr6:i (2.53) BS01 CLA N/A GO:0005737 ... A0A222AI80 38866834
    909068 8xr6:i (2.53) BS02 CLA N/A GO:0005737 ... A0A222AI80 38866834
    909069 8xr6:j (2.53) BS01 peptide N/A GO:0009507 ... A0A222AI54 38866834
    909070 8xr6:k (2.53) BS01 CLA N/A GO:0005737 ... A0A222AIA0 38866834
    909071 8xr6:k (2.53) BS02 8CT N/A GO:0005737 ... A0A222AIA0 38866834
    909072 8xr6:k (2.53) BS03 8CT N/A GO:0005737 ... A0A222AIA0 38866834
    909073 8xr6:n (2.53) BS01 CLA N/A N/A N/A 38866834
    909074 8xr6:n (2.53) BS02 CLA N/A N/A N/A 38866834
    909075 8xr6:n (2.53) BS03 CLA N/A N/A N/A 38866834
    909076 8xr6:n (2.53) BS04 CLA N/A N/A N/A 38866834
    909077 8xr6:n (2.53) BS05 CLA N/A N/A N/A 38866834
    909078 8xr6:n (2.53) BS06 CLA N/A N/A N/A 38866834
    909079 8xr6:n (2.53) BS07 CLA N/A N/A N/A 38866834
    909080 8xr6:p (2.53) BS01 CLA N/A GO:0009765 ... N/A 38866834
    909081 8xr6:p (2.53) BS02 II0 N/A GO:0009765 ... N/A 38866834
    909082 8xr6:p (2.53) BS03 CLA N/A GO:0009765 ... N/A 38866834
    909083 8xr6:p (2.53) BS04 CLA N/A GO:0009765 ... N/A 38866834
    909084 8xr6:p (2.53) BS05 CLA N/A GO:0009765 ... N/A 38866834
    909085 8xr6:p (2.53) BS06 CLA N/A GO:0009765 ... N/A 38866834
    909086 8xr6:p (2.53) BS07 CLA N/A GO:0009765 ... N/A 38866834
    909087 8xr6:p (2.53) BS08 CLA N/A GO:0009765 ... N/A 38866834
    909088 8xr6:p (2.53) BS09 CLA N/A GO:0009765 ... N/A 38866834
    909089 8xr6:p (2.53) BS10 CLA N/A GO:0009765 ... N/A 38866834
    909090 8xr6:p (2.53) BS11 CLA N/A GO:0009765 ... N/A 38866834
    909091 8xr6:p (2.53) BS12 KC2 N/A GO:0009765 ... N/A 38866834
    909092 8xr6:p (2.53) BS13 CLA N/A GO:0009765 ... N/A 38866834
    909093 8xr6:p (2.53) BS14 CLA N/A GO:0009765 ... N/A 38866834
    909094 8xr6:p (2.53) BS15 II0 N/A GO:0009765 ... N/A 38866834
    909095 8xr6:p (2.53) BS16 II0 N/A GO:0009765 ... N/A 38866834
    909096 8xr6:p (2.53) BS17 II0 N/A GO:0009765 ... N/A 38866834
    909097 8xr6:p (2.53) BS18 II0 N/A GO:0009765 ... N/A 38866834
    909098 8xr6:p (2.53) BS19 IHT N/A GO:0009765 ... N/A 38866834
    909099 8xr6:p (2.53) BS20 CLA N/A GO:0009765 ... N/A 38866834
    909100 8xr6:q (2.53) BS01 peptide N/A N/A N/A 38866834
    909101 8xr6:v (2.53) BS01 HEM N/A GO:0005506 ... A0A222AI35 38866834
    909102 8xr6:x (2.53) BS01 CLA N/A GO:0009507 ... A0A222AI61 38866834
    909103 8xr6:y (2.53) BS01 8CT N/A GO:0009507 ... A0A222AI69 38866834
    909104 8xr6:z (2.53) BS01 CLA N/A GO:0009507 ... A0A222AI96 38866834
    909105 8xr8:A (2.53) BS01 SIA N/A N/A A0A024CWY9 39562538
    909106 8xr8:B (2.53) BS01 SIA N/A N/A A0A024CWY9 39562538
    909107 8xr8:C (2.53) BS01 SIA N/A N/A A0A024CWY9 39562538
    909108 8xr9:A (2.6) BS01 SIA N/A N/A Q67333 39562538
    909109 8xr9:B (2.6) BS01 SIA N/A N/A Q67333 39562538
    909110 8xr9:C (2.6) BS01 SIA N/A N/A Q67333 39562538
    909111 8xra:A (2.31) BS01 SIA N/A N/A Q67333 39562538
    909112 8xra:B (2.31) BS01 SIA N/A N/A Q67333 39562538
    909113 8xra:C (2.31) BS01 SIA N/A N/A Q67333 39562538
    909114 8xrc:A (2.5) BS01 SIA N/A N/A A0A024CWY9 39562538
    909115 8xrc:B (2.5) BS01 SIA N/A N/A A0A024CWY9 39562538
    909116 8xrc:C (2.5) BS01 SIA N/A N/A A0A024CWY9 39562538
    909117 8xrd:A (2.87) BS01 SIA N/A N/A A0A024CWY9 39562538
    909118 8xrd:B (2.87) BS01 SIA N/A N/A A0A024CWY9 39562538
    909119 8xrd:C (2.87) BS01 SIA N/A N/A A0A024CWY9 39562538
    909120 8xrf:A (2.94) BS01 dna N/A GO:0003677 ... Q00942 N/A
    909121 8xrf:A (2.94) BS02 dna N/A GO:0003677 ... Q00942 N/A
    909122 8xrf:A (2.94) BS03 dna N/A GO:0003677 ... Q00942 N/A
    909123 8xrf:A (2.94) BS04 MG N/A GO:0003677 ... Q00942 N/A
    909124 8xrf:A (2.94) BS05 MG N/A GO:0003677 ... Q00942 N/A
    909125 8xrf:A (2.94) BS06 MG N/A GO:0003677 ... Q00942 N/A
    909126 8xrf:B (2.94) BS01 dna N/A GO:0003677 ... Q00942 N/A
    909127 8xrf:B (2.94) BS02 dna N/A GO:0003677 ... Q00942 N/A
    909128 8xrf:B (2.94) BS03 dna N/A GO:0003677 ... Q00942 N/A
    909129 8xrf:B (2.94) BS04 MG N/A GO:0003677 ... Q00942 N/A
    909130 8xrf:B (2.94) BS05 MG N/A GO:0003677 ... Q00942 N/A
    909131 8xrf:B (2.94) BS06 MG N/A GO:0003677 ... Q00942 N/A
    909132 8xrg:A (1.61) BS01 ADP N/A N/A Q00942 N/A
    909133 8xrh:A (1.25) BS01 ANP N/A N/A Q00942 N/A
    909134 8xri:A (2.92) BS01 dna N/A GO:0003677 ... Q00942 N/A
    909135 8xri:A (2.92) BS02 dna N/A GO:0003677 ... Q00942 N/A
    909136 8xri:A (2.92) BS03 dna N/A GO:0003677 ... Q00942 N/A
    909137 8xri:A (2.92) BS04 MG N/A GO:0003677 ... Q00942 N/A
    909138 8xri:A (2.92) BS05 MG N/A GO:0003677 ... Q00942 N/A
    909139 8xri:B (2.92) BS01 dna N/A GO:0003677 ... Q00942 N/A
    909140 8xri:B (2.92) BS02 dna N/A GO:0003677 ... Q00942 N/A
    909141 8xri:B (2.92) BS03 dna N/A GO:0003677 ... Q00942 N/A
    909142 8xri:B (2.92) BS04 dna N/A GO:0003677 ... Q00942 N/A
    909143 8xri:B (2.92) BS05 MG N/A GO:0003677 ... Q00942 N/A
    909144 8xri:B (2.92) BS06 MG N/A GO:0003677 ... Q00942 N/A
    909145 8xrr:A (2.57) BS01 A1LV8 N/A N/A N/A N/A
    909146 8xrt:A (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    909147 8xrt:B (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    909148 8xrt:C (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    909149 8xrt:D (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    909150 8xrt:E (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    909151 8xrt:F (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    909152 8xru:A (2.02) BS01 CA N/A GO:0004553 ... N/A 38527679
    909153 8xru:B (2.02) BS01 CA N/A GO:0004553 ... N/A 38527679
    909154 8xrv:A (2.4) BS01 BGC N/A GO:0004553 ... N/A 38527679
    909155 8xrv:A (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    909156 8xrv:B (2.4) BS01 BGC N/A GO:0004553 ... N/A 38527679
    909157 8xrv:B (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    909158 8xrv:C (2.4) BS01 BGC N/A GO:0004553 ... N/A 38527679
    909159 8xrv:C (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    909160 8xrv:D (2.4) BS01 BGC N/A GO:0004553 ... N/A 38527679
    909161 8xrv:D (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    909162 8xrv:E (2.4) BS01 BGC N/A GO:0004553 ... N/A 38527679
    909163 8xrv:E (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    909164 8xrv:F (2.4) BS01 BGC N/A GO:0004553 ... N/A 38527679
    909165 8xrv:F (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    909166 8xrw:I (2.2) BS01 ATP N/A GO:0004595 ... O26010 N/A
    909167 8xrw:J (2.2) BS01 ATP N/A GO:0004595 ... O26010 N/A
    909168 8xrw:L (2.2) BS01 ATP N/A GO:0004595 ... O26010 N/A
    909169 8xrx:A (2.5) BS01 BGC N/A GO:0004553 ... N/A 38527679
    909170 8xrx:A (2.5) BS02 BGC N/A GO:0004553 ... N/A 38527679
    909171 8xrx:A (2.5) BS03 CA N/A GO:0004553 ... N/A 38527679
    909172 8xrx:B (2.5) BS01 BGC N/A GO:0004553 ... N/A 38527679
    909173 8xrx:B (2.5) BS02 GLC N/A GO:0004553 ... N/A 38527679
    909174 8xrx:B (2.5) BS03 CA N/A GO:0004553 ... N/A 38527679
    909175 8xrx:C (2.5) BS01 BGC N/A GO:0004553 ... N/A 38527679
    909176 8xrx:C (2.5) BS02 CA N/A GO:0004553 ... N/A 38527679
    909177 8xrx:D (2.5) BS01 BGC N/A GO:0004553 ... N/A 38527679
    909178 8xrx:D (2.5) BS02 CA N/A GO:0004553 ... N/A 38527679
    909179 8xrx:E (2.5) BS01 CA N/A GO:0004553 ... N/A 38527679
    909180 8xrx:F (2.5) BS01 BGC N/A GO:0004553 ... N/A 38527679
    909181 8xrx:F (2.5) BS02 CA N/A GO:0004553 ... N/A 38527679
    909182 8xrz:C (2.11) BS01 A1D5F N/A N/A E6SHQ4 N/A
    909183 8xs1:H (2.3) BS01 peptide N/A N/A N/A 39859361
    909184 8xs1:L (2.3) BS01 peptide N/A N/A N/A 39859361
    909185 8xs6:A (2.95) BS01 dna N/A N/A N/A 39900897
    909186 8xs6:A (2.95) BS02 dna N/A N/A N/A 39900897
    909187 8xs6:B (2.95) BS01 dna N/A N/A N/A 39900897
    909188 8xs6:B (2.95) BS02 dna N/A N/A N/A 39900897
    909189 8xs6:B (2.95) BS03 A1LWH N/A N/A N/A 39900897
    909190 8xs7:A (2.77) BS01 dna N/A N/A N/A 39900897
    909191 8xs7:B (2.77) BS01 dna N/A N/A N/A 39900897
    909192 8xs7:B (2.77) BS02 dna N/A N/A N/A 39900897
    909193 8xs7:B (2.77) BS03 A1LWI N/A N/A N/A 39900897
    909194 8xs8:A (3.11) BS01 dna N/A N/A N/A 39900897
    909195 8xs8:A (3.11) BS02 dna N/A N/A N/A 39900897
    909196 8xs8:B (3.11) BS01 dna N/A N/A N/A 39900897
    909197 8xs8:B (3.11) BS02 dna N/A N/A N/A 39900897
    909198 8xs8:B (3.11) BS03 W62 N/A N/A N/A 39900897
    909199 8xs9:A (2.801) BS01 dna N/A N/A N/A 39900897
    909200 8xs9:A (2.801) BS02 dna N/A N/A N/A 39900897

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).