SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    909201 8xs9:B (2.801) BS01 dna N/A N/A N/A 39900897
    909202 8xs9:B (2.801) BS02 dna N/A N/A N/A 39900897
    909203 8xs9:B (2.801) BS03 A1LWJ N/A N/A N/A 39900897
    909204 8xsa:A (2.597) BS01 dna N/A N/A N/A 39900897
    909205 8xsa:A (2.597) BS02 dna N/A N/A N/A 39900897
    909206 8xsa:B (2.597) BS01 dna N/A N/A N/A 39900897
    909207 8xsa:B (2.597) BS02 dna N/A N/A N/A 39900897
    909208 8xsa:B (2.597) BS03 A1LWK N/A N/A N/A 39900897
    909209 8xsb:A (3.06) BS01 dna N/A N/A N/A 39900897
    909210 8xsb:A (3.06) BS02 dna N/A N/A N/A 39900897
    909211 8xsb:B (3.06) BS01 dna N/A N/A N/A 39900897
    909212 8xsb:B (3.06) BS02 dna N/A N/A N/A 39900897
    909213 8xsb:B (3.06) BS03 JY6 N/A N/A N/A 39900897
    909214 8xsc:A (1.96) BS01 PNS N/A GO:0004595 ... O26010 N/A
    909215 8xsf:A (2.16) BS01 ZN N/A GO:0006508 ... Q9BYF1 38850530
    909216 8xsg:A (1.8) BS01 URI N/A N/A C5RYK2 N/A
    909217 8xsj:A (2.61) BS01 ZN N/A GO:0006508 ... Q9BYF1 38850530
    909218 8xsm:A (3.01) BS01 RBF N/A N/A Q9HAB3 N/A
    909219 8xsm:A (3.01) BS02 RBF N/A N/A Q9HAB3 N/A
    909220 8xsu:A (2.632) BS01 A1LW0 N/A N/A P58154 39043224
    909221 8xsu:B (2.632) BS01 A1LW0 N/A N/A P58154 39043224
    909222 8xsu:B (2.632) BS02 A1LW0 N/A N/A P58154 39043224
    909223 8xsu:C (2.632) BS01 A1LW0 N/A N/A P58154 39043224
    909224 8xsu:C (2.632) BS02 A1LW0 N/A N/A P58154 39043224
    909225 8xsu:D (2.632) BS01 A1LW0 N/A GO:0005576 ... P58154 39043224
    909226 8xsu:D (2.632) BS02 A1LW0 N/A GO:0005576 ... P58154 39043224
    909227 8xsu:E (2.632) BS01 A1LW0 N/A N/A P58154 39043224
    909228 8xsu:E (2.632) BS02 A1LW0 N/A N/A P58154 39043224
    909229 8xsv:A (2.0) BS01 COD N/A GO:0004595 ... O26010 N/A
    909230 8xsv:B (2.0) BS01 COD N/A GO:0004595 ... O26010 N/A
    909231 8xsv:C (2.0) BS01 COD N/A GO:0004595 ... O26010 N/A
    909232 8xsv:D (2.0) BS01 COD N/A GO:0004595 ... O26010 N/A
    909233 8xsv:D (2.0) BS02 COD N/A GO:0004595 ... O26010 N/A
    909234 8xsv:E (2.0) BS01 COD N/A GO:0004595 ... O26010 N/A
    909235 8xsv:E (2.0) BS02 COD N/A GO:0004595 ... O26010 N/A
    909236 8xsv:F (2.0) BS01 COD N/A GO:0004595 ... O26010 N/A
    909237 8xsw:A (2.6) BS01 A1LW0 N/A N/A P58154 N/A
    909238 8xsw:A (2.6) BS02 A1LW0 N/A N/A P58154 N/A
    909239 8xsw:B (2.6) BS01 A1LW0 N/A N/A P58154 N/A
    909240 8xsw:B (2.6) BS02 A1LW0 N/A N/A P58154 N/A
    909241 8xsw:C (2.6) BS01 A1LW0 N/A N/A P58154 N/A
    909242 8xsw:C (2.6) BS02 A1LW0 N/A N/A P58154 N/A
    909243 8xsw:D (2.6) BS01 A1LW0 N/A N/A P58154 N/A
    909244 8xsw:D (2.6) BS02 A1LW0 N/A N/A P58154 N/A
    909245 8xsw:E (2.6) BS01 A1LW0 N/A N/A P58154 N/A
    909246 8xsw:E (2.6) BS02 A1LW0 N/A N/A P58154 N/A
    909247 8xsx:CA (2.4) BS01 rna N/A GO:0003676 ... Q9UQ80 38942792
    909248 8xsx:CB (2.4) BS01 rna N/A GO:0002244 ... P13639 38942792
    909249 8xsx:CB (2.4) BS02 rna N/A GO:0002244 ... P13639 38942792
    909250 8xsx:CB (2.4) BS03 ADP N/A GO:0002244 ... P13639 38942792
    909251 8xsx:CD (2.4) BS01 rna N/A GO:0003723 ... Q8NC51 38942792
    909252 8xsx:LA (2.4) BS01 rna N/A GO:0002181 ... P62917 38942792
    909253 8xsx:LA (2.4) BS02 rna N/A GO:0002181 ... P62917 38942792
    909254 8xsx:LA (2.4) BS03 MG N/A GO:0002181 ... P62917 38942792
    909255 8xsx:LB (2.4) BS01 rna N/A GO:0002181 ... P39023 38942792
    909256 8xsx:LC (2.4) BS01 rna N/A GO:0002181 ... P36578 38942792
    909257 8xsx:LC (2.4) BS02 rna N/A GO:0002181 ... P36578 38942792
    909258 8xsx:LD (2.4) BS01 rna N/A GO:0000027 ... P46777 38942792
    909259 8xsx:LD (2.4) BS02 rna N/A GO:0000027 ... P46777 38942792
    909260 8xsx:LE (2.4) BS01 rna N/A GO:0002181 ... Q02878 38942792
    909261 8xsx:LF (2.4) BS01 rna N/A GO:0000463 ... P18124 38942792
    909262 8xsx:LF (2.4) BS02 rna N/A GO:0000463 ... P18124 38942792
    909263 8xsx:LG (2.4) BS01 rna N/A GO:0000470 ... P62424 38942792
    909264 8xsx:LG (2.4) BS02 rna N/A GO:0000470 ... P62424 38942792
    909265 8xsx:LH (2.4) BS01 rna N/A GO:0002181 ... P32969 38942792
    909266 8xsx:LI (2.4) BS01 rna N/A GO:0000027 ... Q96L21 38942792
    909267 8xsx:LI (2.4) BS02 rna N/A GO:0000027 ... Q96L21 38942792
    909268 8xsx:LJ (2.4) BS01 rna N/A GO:0000027 ... P62913 38942792
    909269 8xsx:LJ (2.4) BS02 rna N/A GO:0000027 ... P62913 38942792
    909270 8xsx:LK (2.4) BS01 rna N/A GO:0002181 ... P30050 38942792
    909271 8xsx:LL (2.4) BS01 rna N/A GO:0001824 ... P26373 38942792
    909272 8xsx:LL (2.4) BS02 rna N/A GO:0001824 ... P26373 38942792
    909273 8xsx:LM (2.4) BS01 rna N/A GO:0002181 ... P50914 38942792
    909274 8xsx:LN (2.4) BS01 rna N/A GO:0002181 ... P61313 38942792
    909275 8xsx:LN (2.4) BS02 rna N/A GO:0002181 ... P61313 38942792
    909276 8xsx:LO (2.4) BS01 rna N/A GO:0002181 ... P40429 38942792
    909277 8xsx:LP (2.4) BS01 rna N/A GO:0002181 ... P18621 38942792
    909278 8xsx:LP (2.4) BS02 rna N/A GO:0002181 ... P18621 38942792
    909279 8xsx:LQ (2.4) BS01 rna N/A GO:0002181 ... Q07020 38942792
    909280 8xsx:LR (2.4) BS01 rna N/A GO:0002181 ... P84098 38942792
    909281 8xsx:LR (2.4) BS02 rna N/A GO:0002181 ... P84098 38942792
    909282 8xsx:LS (2.4) BS01 rna N/A GO:0002181 ... Q02543 38942792
    909283 8xsx:LS (2.4) BS02 rna N/A GO:0002181 ... Q02543 38942792
    909284 8xsx:LT (2.4) BS01 rna N/A GO:0002181 ... P46778 38942792
    909285 8xsx:LT (2.4) BS02 rna N/A GO:0002181 ... P46778 38942792
    909286 8xsx:LU (2.4) BS01 rna N/A GO:0002181 ... P35268 38942792
    909287 8xsx:LV (2.4) BS01 rna N/A GO:0000122 ... P62829 38942792
    909288 8xsx:LW (2.4) BS01 rna N/A GO:0000027 ... P83731 38942792
    909289 8xsx:LW (2.4) BS02 rna N/A GO:0000027 ... P83731 38942792
    909290 8xsx:LX (2.4) BS01 rna N/A GO:0002181 ... P62750 38942792
    909291 8xsx:LX (2.4) BS02 rna N/A GO:0002181 ... P62750 38942792
    909292 8xsx:LY (2.4) BS01 rna N/A GO:0002181 ... P61254 38942792
    909293 8xsx:LY (2.4) BS02 rna N/A GO:0002181 ... P61254 38942792
    909294 8xsx:LZ (2.4) BS01 rna N/A GO:0002181 ... P61353 38942792
    909295 8xsx:La (2.4) BS01 rna N/A GO:0002181 ... P46776 38942792
    909296 8xsx:Lb (2.4) BS01 rna N/A GO:0002181 ... P47914 38942792
    909297 8xsx:Lc (2.4) BS01 rna N/A GO:0002181 ... P62888 38942792
    909298 8xsx:Lc (2.4) BS02 rna N/A GO:0002181 ... P62888 38942792
    909299 8xsx:Ld (2.4) BS01 rna N/A GO:0002181 ... P62899 38942792
    909300 8xsx:Le (2.4) BS01 rna N/A GO:0002181 ... P62910 38942792
    909301 8xsx:Le (2.4) BS02 MG N/A GO:0002181 ... P62910 38942792
    909302 8xsx:Lf (2.4) BS01 rna N/A GO:0000049 ... P18077 38942792
    909303 8xsx:Lg (2.4) BS01 rna N/A GO:0002181 ... P49207 38942792
    909304 8xsx:Lg (2.4) BS02 MG N/A GO:0002181 ... P49207 38942792
    909305 8xsx:Lg (2.4) BS03 ZN N/A GO:0002181 ... P49207 38942792
    909306 8xsx:Lh (2.4) BS01 rna N/A GO:0000463 ... P42766 38942792
    909307 8xsx:Lh (2.4) BS02 rna N/A GO:0000463 ... P42766 38942792
    909308 8xsx:Li (2.4) BS01 rna N/A GO:0002181 ... Q9Y3U8 38942792
    909309 8xsx:Lj (2.4) BS01 rna N/A GO:0002181 ... P61927 38942792
    909310 8xsx:Lj (2.4) BS02 rna N/A GO:0002181 ... P61927 38942792
    909311 8xsx:Lj (2.4) BS03 ZN N/A GO:0002181 ... P61927 38942792
    909312 8xsx:Lk (2.4) BS01 rna N/A GO:0001501 ... P63173 38942792
    909313 8xsx:Ll (2.4) BS01 rna N/A GO:0002181 ... P62891 38942792
    909314 8xsx:Ll (2.4) BS02 rna N/A GO:0002181 ... P62891 38942792
    909315 8xsx:Lm (2.4) BS01 rna N/A GO:0002181 ... P62987 38942792
    909316 8xsx:Lm (2.4) BS02 ZN N/A GO:0002181 ... P62987 38942792
    909317 8xsx:Lo (2.4) BS01 rna N/A GO:0002181 ... P83881 38942792
    909318 8xsx:Lo (2.4) BS02 rna N/A GO:0002181 ... P83881 38942792
    909319 8xsx:Lo (2.4) BS03 ZN N/A GO:0002181 ... P83881 38942792
    909320 8xsx:Lp (2.4) BS01 rna N/A GO:0002181 ... P61513 38942792
    909321 8xsx:Lp (2.4) BS02 ZN N/A GO:0002181 ... P61513 38942792
    909322 8xsx:Lr (2.4) BS01 rna N/A GO:0002181 ... P46779 38942792
    909323 8xsx:Ls (2.4) BS01 rna N/A GO:0002181 ... P05388 38942792
    909324 8xsx:Lz (2.4) BS01 rna N/A GO:0002181 ... P62906 38942792
    909325 8xsx:SA (2.4) BS01 rna N/A GO:0000028 ... P08865 38942792
    909326 8xsx:SB (2.4) BS01 rna N/A GO:0002181 ... P61247 38942792
    909327 8xsx:SC (2.4) BS01 rna N/A GO:0002181 ... P15880 38942792
    909328 8xsx:SD (2.4) BS01 rna N/A GO:0000977 ... P23396 38942792
    909329 8xsx:SE (2.4) BS01 rna N/A GO:0002181 ... P62701 38942792
    909330 8xsx:SF (2.4) BS01 rna N/A GO:0000028 ... P46782 38942792
    909331 8xsx:SG (2.4) BS01 rna N/A GO:0000082 ... P62753 38942792
    909332 8xsx:SH (2.4) BS01 rna N/A GO:0001843 ... P62081 38942792
    909333 8xsx:SI (2.4) BS01 rna N/A GO:0000462 ... P62241 38942792
    909334 8xsx:SI (2.4) BS02 rna N/A GO:0000462 ... P62241 38942792
    909335 8xsx:SJ (2.4) BS01 rna N/A GO:0002181 ... P46781 38942792
    909336 8xsx:SK (2.4) BS01 rna N/A GO:0002181 ... P46783 38942792
    909337 8xsx:SL (2.4) BS01 rna N/A GO:0002181 ... P62280 38942792
    909338 8xsx:SM (2.4) BS01 rna N/A GO:0002181 ... P25398 38942792
    909339 8xsx:SN (2.4) BS01 rna N/A GO:0002181 ... P62277 38942792
    909340 8xsx:SN (2.4) BS02 rna N/A GO:0002181 ... P62277 38942792
    909341 8xsx:SO (2.4) BS01 rna N/A GO:0000028 ... P62263 38942792
    909342 8xsx:SP (2.4) BS01 rna N/A GO:0000028 ... P62841 38942792
    909343 8xsx:SQ (2.4) BS01 rna N/A GO:0000462 ... P62249 38942792
    909344 8xsx:SR (2.4) BS01 rna N/A GO:0002181 ... P08708 38942792
    909345 8xsx:SS (2.4) BS01 rna N/A GO:0002181 ... P62269 38942792
    909346 8xsx:ST (2.4) BS01 rna N/A GO:0000028 ... P39019 38942792
    909347 8xsx:SU (2.4) BS01 rna N/A GO:0002181 ... P60866 38942792
    909348 8xsx:SW (2.4) BS01 rna N/A GO:0002181 ... P62244 38942792
    909349 8xsx:SX (2.4) BS01 rna N/A GO:0002181 ... P62266 38942792
    909350 8xsx:SY (2.4) BS01 rna N/A GO:0002181 ... P62847 38942792
    909351 8xsx:SZ (2.4) BS01 rna N/A GO:0002181 ... P62851 38942792
    909352 8xsx:Sa (2.4) BS01 rna N/A GO:0002181 ... P62854 38942792
    909353 8xsx:Sa (2.4) BS02 ZN N/A GO:0002181 ... P62854 38942792
    909354 8xsx:Sb (2.4) BS01 rna N/A GO:0000028 ... P42677 38942792
    909355 8xsx:Sc (2.4) BS01 rna N/A GO:0000028 ... P62857 38942792
    909356 8xsx:Sd (2.4) BS01 rna N/A GO:0002181 ... P62273 38942792
    909357 8xsx:Se (2.4) BS01 rna N/A GO:0003735 ... P62861 38942792
    909358 8xsx:Sf (2.4) BS01 rna N/A GO:0002181 ... P62979 38942792
    909359 8xsx:Sg (2.4) BS01 rna N/A GO:0001891 ... P63244 38942792
    909360 8xsy:CA (3.0) BS01 rna N/A GO:0003676 ... Q9UQ80 38942792
    909361 8xsy:CE (3.0) BS01 rna N/A GO:0003713 ... Q96CT7 38942792
    909362 8xsy:LA (3.0) BS01 rna N/A GO:0002181 ... P62917 38942792
    909363 8xsy:LA (3.0) BS02 rna N/A GO:0002181 ... P62917 38942792
    909364 8xsy:LA (3.0) BS03 MG N/A GO:0002181 ... P62917 38942792
    909365 8xsy:LB (3.0) BS01 rna N/A GO:0002181 ... P39023 38942792
    909366 8xsy:LC (3.0) BS01 rna N/A GO:0002181 ... P36578 38942792
    909367 8xsy:LC (3.0) BS02 rna N/A GO:0002181 ... P36578 38942792
    909368 8xsy:LD (3.0) BS01 rna N/A GO:0000027 ... P46777 38942792
    909369 8xsy:LD (3.0) BS02 rna N/A GO:0000027 ... P46777 38942792
    909370 8xsy:LE (3.0) BS01 rna N/A GO:0002181 ... Q02878 38942792
    909371 8xsy:LF (3.0) BS01 rna N/A GO:0000463 ... P18124 38942792
    909372 8xsy:LF (3.0) BS02 rna N/A GO:0000463 ... P18124 38942792
    909373 8xsy:LG (3.0) BS01 rna N/A GO:0000470 ... P62424 38942792
    909374 8xsy:LG (3.0) BS02 rna N/A GO:0000470 ... P62424 38942792
    909375 8xsy:LH (3.0) BS01 rna N/A GO:0002181 ... P32969 38942792
    909376 8xsy:LI (3.0) BS01 rna N/A GO:0000122 ... P27635 38942792
    909377 8xsy:LI (3.0) BS02 rna N/A GO:0000122 ... P27635 38942792
    909378 8xsy:LJ (3.0) BS01 rna N/A GO:0000027 ... P62913 38942792
    909379 8xsy:LJ (3.0) BS02 rna N/A GO:0000027 ... P62913 38942792
    909380 8xsy:LL (3.0) BS01 rna N/A GO:0001824 ... P26373 38942792
    909381 8xsy:LL (3.0) BS02 rna N/A GO:0001824 ... P26373 38942792
    909382 8xsy:LM (3.0) BS01 rna N/A GO:0002181 ... P50914 38942792
    909383 8xsy:LN (3.0) BS01 rna N/A GO:0002181 ... P61313 38942792
    909384 8xsy:LN (3.0) BS02 rna N/A GO:0002181 ... P61313 38942792
    909385 8xsy:LO (3.0) BS01 rna N/A GO:0002181 ... P40429 38942792
    909386 8xsy:LP (3.0) BS01 rna N/A GO:0002181 ... P18621 38942792
    909387 8xsy:LP (3.0) BS02 rna N/A GO:0002181 ... P18621 38942792
    909388 8xsy:LQ (3.0) BS01 rna N/A GO:0002181 ... Q07020 38942792
    909389 8xsy:LR (3.0) BS01 rna N/A GO:0002181 ... P84098 38942792
    909390 8xsy:LR (3.0) BS02 rna N/A GO:0002181 ... P84098 38942792
    909391 8xsy:LS (3.0) BS01 rna N/A GO:0002181 ... Q02543 38942792
    909392 8xsy:LS (3.0) BS02 rna N/A GO:0002181 ... Q02543 38942792
    909393 8xsy:LT (3.0) BS01 rna N/A GO:0002181 ... P46778 38942792
    909394 8xsy:LT (3.0) BS02 rna N/A GO:0002181 ... P46778 38942792
    909395 8xsy:LU (3.0) BS01 rna N/A GO:0002181 ... P35268 38942792
    909396 8xsy:LV (3.0) BS01 rna N/A GO:0000122 ... P62829 38942792
    909397 8xsy:LW (3.0) BS01 rna N/A GO:0000027 ... P83731 38942792
    909398 8xsy:LW (3.0) BS02 rna N/A GO:0000027 ... P83731 38942792
    909399 8xsy:LX (3.0) BS01 rna N/A GO:0002181 ... P62750 38942792
    909400 8xsy:LX (3.0) BS02 rna N/A GO:0002181 ... P62750 38942792

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).