SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    909601 8xt0:LR (3.2) BS01 rna N/A GO:0003723 ... Q9H0U6 38942792
    909602 8xt0:LR (3.2) BS02 rna N/A GO:0003723 ... Q9H0U6 38942792
    909603 8xt0:LS (3.2) BS01 rna N/A GO:0003735 ... P49406 38942792
    909604 8xt0:LT (3.2) BS01 rna N/A GO:0003723 ... Q9BYC9 38942792
    909605 8xt0:LU (3.2) BS01 rna N/A GO:0003723 ... Q7Z2W9 38942792
    909606 8xt0:LV (3.2) BS01 rna N/A GO:0003735 ... Q9NWU5 38942792
    909607 8xt0:LW (3.2) BS01 rna N/A GO:0001650 ... Q16540 38942792
    909608 8xt0:LX (3.2) BS01 rna N/A GO:0003723 ... Q96A35 38942792
    909609 8xt0:La (3.2) BS01 rna N/A GO:0003723 ... Q9P0M9 38942792
    909610 8xt0:Lb (3.2) BS01 rna N/A GO:0003723 ... Q13084 38942792
    909611 8xt0:Ld (3.2) BS01 rna N/A GO:0003735 ... Q8TCC3 38942792
    909612 8xt0:Lf (3.2) BS01 rna N/A GO:0003723 ... Q9BYC8 38942792
    909613 8xt0:Lf (3.2) BS02 ZN N/A GO:0003723 ... Q9BYC8 38942792
    909614 8xt0:Lg (3.2) BS01 rna N/A GO:0003735 ... O75394 38942792
    909615 8xt0:Lh (3.2) BS01 rna N/A GO:0003735 ... Q9BQ48 38942792
    909616 8xt0:Li (3.2) BS01 rna N/A GO:0003735 ... Q9NZE8 38942792
    909617 8xt0:Lj (3.2) BS01 rna N/A GO:0003735 ... Q9P0J6 38942792
    909618 8xt0:Lj (3.2) BS02 ZN N/A GO:0003735 ... Q9P0J6 38942792
    909619 8xt0:Lk (3.2) BS01 rna N/A GO:0003723 ... Q9BZE1 38942792
    909620 8xt0:Ll (3.2) BS01 rna N/A GO:0005515 ... Q96DV4 38942792
    909621 8xt0:Ll (3.2) BS02 rna N/A GO:0005515 ... Q96DV4 38942792
    909622 8xt0:Ln (3.2) BS01 rna N/A GO:0003723 ... Q9NQ50 38942792
    909623 8xt0:Lo (3.2) BS01 rna N/A GO:0003723 ... Q8IXM3 38942792
    909624 8xt0:Lp (3.2) BS01 rna N/A GO:0003723 ... Q9Y6G3 38942792
    909625 8xt0:Lq (3.2) BS01 rna N/A GO:0003723 ... Q8N983 38942792
    909626 8xt0:Lr (3.2) BS01 rna N/A GO:0003723 ... Q9H9J2 38942792
    909627 8xt0:Lu (3.2) BS01 rna N/A GO:0003735 ... Q9HD33 38942792
    909628 8xt0:Lv (3.2) BS01 rna N/A GO:0005515 ... Q96GC5 38942792
    909629 8xt0:Lv (3.2) BS02 rna N/A GO:0005515 ... Q96GC5 38942792
    909630 8xt0:Lw (3.2) BS01 rna N/A GO:0003735 ... Q13405 38942792
    909631 8xt0:Ly (3.2) BS01 rna N/A GO:0003735 ... Q4U2R6 38942792
    909632 8xt0:Lz (3.2) BS01 rna N/A GO:0003735 ... Q86TS9 38942792
    909633 8xt0:SB (3.2) BS01 rna N/A GO:0003735 ... Q9Y399 38942792
    909634 8xt0:SB (3.2) BS02 ZN N/A GO:0003735 ... Q9Y399 38942792
    909635 8xt0:SE (3.2) BS01 rna N/A GO:0003723 ... P82675 38942792
    909636 8xt0:SF (3.2) BS01 rna N/A GO:0003735 ... P82932 38942792
    909637 8xt0:SG (3.2) BS01 rna N/A GO:0000028 ... Q9Y2R9 38942792
    909638 8xt0:SI (3.2) BS01 rna N/A GO:0003723 ... P82933 38942792
    909639 8xt0:SJ (3.2) BS01 rna N/A GO:0005739 ... P82664 38942792
    909640 8xt0:SK (3.2) BS01 rna N/A GO:0003723 ... P82912 38942792
    909641 8xt0:SL (3.2) BS01 rna N/A GO:0003723 ... O15235 38942792
    909642 8xt0:SN (3.2) BS01 rna N/A GO:0003723 ... O60783 38942792
    909643 8xt0:SO (3.2) BS01 rna N/A GO:0003723 ... P82914 38942792
    909644 8xt0:SP (3.2) BS01 rna N/A GO:0003735 ... Q9Y3D3 38942792
    909645 8xt0:SQ (3.2) BS01 rna N/A GO:0003735 ... Q9Y2R5 38942792
    909646 8xt0:SR (3.2) BS01 rna N/A GO:0003735 ... Q9NVS2 38942792
    909647 8xt0:SS (3.2) BS01 rna N/A GO:0003735 ... Q9Y676 38942792
    909648 8xt0:SS (3.2) BS02 ZN N/A GO:0003735 ... Q9Y676 38942792
    909649 8xt0:ST (3.2) BS01 rna N/A GO:0003735 ... Q9Y3D5 38942792
    909650 8xt0:SW (3.2) BS01 rna N/A GO:0003723 ... P82921 38942792
    909651 8xt0:SY (3.2) BS01 rna N/A GO:0003723 ... Q9Y3D9 38942792
    909652 8xt0:SZ (3.2) BS01 rna N/A GO:0003723 ... Q96EL2 38942792
    909653 8xt0:Sa (3.2) BS01 rna N/A GO:0003735 ... P82663 38942792
    909654 8xt0:Sa (3.2) BS02 ZN N/A GO:0003735 ... P82663 38942792
    909655 8xt0:Sb (3.2) BS01 rna N/A GO:0003723 ... Q9BYN8 38942792
    909656 8xt0:Sc (3.2) BS01 rna N/A GO:0000049 ... Q92552 38942792
    909657 8xt0:Se (3.2) BS01 rna N/A GO:0003723 ... P51398 38942792
    909658 8xt0:Se (3.2) BS02 GDP N/A GO:0003723 ... P51398 38942792
    909659 8xt0:Sf (3.2) BS01 rna N/A GO:0003723 ... Q9NP92 38942792
    909660 8xt0:Si (3.2) BS01 rna N/A GO:0003735 ... Q9Y291 38942792
    909661 8xt0:Sj (3.2) BS01 rna N/A GO:0003735 ... P82930 38942792
    909662 8xt0:Sk (3.2) BS01 rna N/A GO:0003723 ... P82673 38942792
    909663 8xt0:Sm (3.2) BS01 rna N/A GO:0001650 ... Q96BP2 38942792
    909664 8xt0:Sn (3.2) BS01 rna N/A GO:0005515 ... Q9NWT8 38942792
    909665 8xt0:Sn (3.2) BS02 rna N/A GO:0005515 ... Q9NWT8 38942792
    909666 8xt1:L3 (3.1) BS01 rna N/A GO:0005515 ... Q96EL3 38942792
    909667 8xt1:L4 (3.1) BS01 rna N/A GO:0003723 ... Q6P161 38942792
    909668 8xt1:L6 (3.1) BS01 rna N/A GO:0003735 ... Q9BQC6 38942792
    909669 8xt1:L8 (3.1) BS01 rna N/A GO:0005515 ... Q8TAE8 38942792
    909670 8xt1:LB (3.1) BS01 rna N/A GO:0003723 ... Q5T653 38942792
    909671 8xt1:LC (3.1) BS01 rna N/A GO:0003723 ... P09001 38942792
    909672 8xt1:LD (3.1) BS01 rna N/A GO:0003723 ... Q9BYD3 38942792
    909673 8xt1:LI (3.1) BS01 rna N/A GO:0003723 ... Q9BYD2 38942792
    909674 8xt1:LJ (3.1) BS01 rna N/A GO:0003723 ... Q7Z7H8 38942792
    909675 8xt1:LK (3.1) BS01 rna N/A GO:0003723 ... Q9Y3B7 38942792
    909676 8xt1:LM (3.1) BS01 rna N/A GO:0003723 ... Q9BYD1 38942792
    909677 8xt1:LN (3.1) BS01 rna N/A GO:0003723 ... Q6P1L8 38942792
    909678 8xt1:LO (3.1) BS01 rna N/A GO:0003723 ... Q9P015 38942792
    909679 8xt1:LP (3.1) BS01 rna N/A GO:0003735 ... Q9NX20 38942792
    909680 8xt1:LQ (3.1) BS01 rna N/A GO:0003735 ... Q9NRX2 38942792
    909681 8xt1:LR (3.1) BS01 rna N/A GO:0003723 ... Q9H0U6 38942792
    909682 8xt1:LR (3.1) BS02 rna N/A GO:0003723 ... Q9H0U6 38942792
    909683 8xt1:LS (3.1) BS01 rna N/A GO:0003735 ... P49406 38942792
    909684 8xt1:LT (3.1) BS01 rna N/A GO:0003723 ... Q9BYC9 38942792
    909685 8xt1:LU (3.1) BS01 rna N/A GO:0003723 ... Q7Z2W9 38942792
    909686 8xt1:LV (3.1) BS01 rna N/A GO:0003735 ... Q9NWU5 38942792
    909687 8xt1:LW (3.1) BS01 rna N/A GO:0001650 ... Q16540 38942792
    909688 8xt1:LX (3.1) BS01 rna N/A GO:0003723 ... Q96A35 38942792
    909689 8xt1:La (3.1) BS01 rna N/A GO:0003723 ... Q9P0M9 38942792
    909690 8xt1:Lb (3.1) BS01 rna N/A GO:0003723 ... Q13084 38942792
    909691 8xt1:Ld (3.1) BS01 rna N/A GO:0003735 ... Q8TCC3 38942792
    909692 8xt1:Lf (3.1) BS01 rna N/A GO:0003723 ... Q9BYC8 38942792
    909693 8xt1:Lf (3.1) BS02 ZN N/A GO:0003723 ... Q9BYC8 38942792
    909694 8xt1:Lg (3.1) BS01 rna N/A GO:0003735 ... O75394 38942792
    909695 8xt1:Lh (3.1) BS01 rna N/A GO:0003735 ... Q9BQ48 38942792
    909696 8xt1:Li (3.1) BS01 rna N/A GO:0003735 ... Q9NZE8 38942792
    909697 8xt1:Lj (3.1) BS01 rna N/A GO:0003735 ... Q9P0J6 38942792
    909698 8xt1:Lj (3.1) BS02 ZN N/A GO:0003735 ... Q9P0J6 38942792
    909699 8xt1:Lk (3.1) BS01 rna N/A GO:0003723 ... Q9BZE1 38942792
    909700 8xt1:Ll (3.1) BS01 rna N/A GO:0005515 ... Q96DV4 38942792
    909701 8xt1:Ll (3.1) BS02 rna N/A GO:0005515 ... Q96DV4 38942792
    909702 8xt1:Ln (3.1) BS01 rna N/A GO:0003723 ... Q9NQ50 38942792
    909703 8xt1:Lo (3.1) BS01 rna N/A GO:0003723 ... Q8IXM3 38942792
    909704 8xt1:Lp (3.1) BS01 rna N/A GO:0003723 ... Q9Y6G3 38942792
    909705 8xt1:Lq (3.1) BS01 rna N/A GO:0003723 ... Q8N983 38942792
    909706 8xt1:Lr (3.1) BS01 rna N/A GO:0003723 ... Q9H9J2 38942792
    909707 8xt1:Lu (3.1) BS01 rna N/A GO:0003735 ... Q9HD33 38942792
    909708 8xt1:Lv (3.1) BS01 rna N/A GO:0005515 ... Q96GC5 38942792
    909709 8xt1:Lv (3.1) BS02 rna N/A GO:0005515 ... Q96GC5 38942792
    909710 8xt1:Lw (3.1) BS01 rna N/A GO:0003735 ... Q13405 38942792
    909711 8xt1:Ly (3.1) BS01 rna N/A GO:0003735 ... Q4U2R6 38942792
    909712 8xt1:Lz (3.1) BS01 rna N/A GO:0003735 ... Q86TS9 38942792
    909713 8xt1:SR (3.1) BS01 rna N/A GO:0003735 ... Q9NVS2 38942792
    909714 8xt1:Sf (3.1) BS01 rna N/A GO:0003723 ... Q9NP92 38942792
    909715 8xt2:L4 (3.3) BS01 rna N/A GO:0003723 ... Q6P161 38942792
    909716 8xt2:L6 (3.3) BS01 rna N/A GO:0003735 ... Q9BQC6 38942792
    909717 8xt2:L8 (3.3) BS01 rna N/A GO:0005515 ... Q8TAE8 38942792
    909718 8xt2:LB (3.3) BS01 rna N/A GO:0003723 ... Q5T653 38942792
    909719 8xt2:LB (3.3) BS02 MG N/A GO:0003723 ... Q5T653 38942792
    909720 8xt2:LC (3.3) BS01 rna N/A GO:0003723 ... P09001 38942792
    909721 8xt2:LD (3.3) BS01 rna N/A GO:0003723 ... Q9BYD3 38942792
    909722 8xt2:LI (3.3) BS01 rna N/A GO:0003723 ... Q9BYD2 38942792
    909723 8xt2:LJ (3.3) BS01 rna N/A GO:0003723 ... Q7Z7H8 38942792
    909724 8xt2:LK (3.3) BS01 rna N/A GO:0003723 ... Q9Y3B7 38942792
    909725 8xt2:LM (3.3) BS01 rna N/A GO:0003723 ... Q9BYD1 38942792
    909726 8xt2:LN (3.3) BS01 rna N/A GO:0003723 ... Q6P1L8 38942792
    909727 8xt2:LO (3.3) BS01 rna N/A GO:0003723 ... Q9P015 38942792
    909728 8xt2:LP (3.3) BS01 rna N/A GO:0003735 ... Q9NX20 38942792
    909729 8xt2:LQ (3.3) BS01 rna N/A GO:0003735 ... Q9NRX2 38942792
    909730 8xt2:LR (3.3) BS01 rna N/A GO:0003723 ... Q9H0U6 38942792
    909731 8xt2:LR (3.3) BS02 rna N/A GO:0003723 ... Q9H0U6 38942792
    909732 8xt2:LS (3.3) BS01 rna N/A GO:0003735 ... P49406 38942792
    909733 8xt2:LT (3.3) BS01 rna N/A GO:0003723 ... Q9BYC9 38942792
    909734 8xt2:LU (3.3) BS01 rna N/A GO:0003723 ... Q7Z2W9 38942792
    909735 8xt2:LV (3.3) BS01 rna N/A GO:0003735 ... Q9NWU5 38942792
    909736 8xt2:LW (3.3) BS01 rna N/A GO:0001650 ... Q16540 38942792
    909737 8xt2:LX (3.3) BS01 rna N/A GO:0003723 ... Q96A35 38942792
    909738 8xt2:La (3.3) BS01 rna N/A GO:0003723 ... Q9P0M9 38942792
    909739 8xt2:Lb (3.3) BS01 rna N/A GO:0003723 ... Q13084 38942792
    909740 8xt2:Ld (3.3) BS01 rna N/A GO:0003735 ... Q8TCC3 38942792
    909741 8xt2:Lf (3.3) BS01 rna N/A GO:0003723 ... Q9BYC8 38942792
    909742 8xt2:Lf (3.3) BS02 ZN N/A GO:0003723 ... Q9BYC8 38942792
    909743 8xt2:Lg (3.3) BS01 rna N/A GO:0003735 ... O75394 38942792
    909744 8xt2:Lh (3.3) BS01 rna N/A GO:0003735 ... Q9BQ48 38942792
    909745 8xt2:Li (3.3) BS01 rna N/A GO:0003735 ... Q9NZE8 38942792
    909746 8xt2:Lj (3.3) BS01 rna N/A GO:0003735 ... Q9P0J6 38942792
    909747 8xt2:Lj (3.3) BS02 ZN N/A GO:0003735 ... Q9P0J6 38942792
    909748 8xt2:Lk (3.3) BS01 rna N/A GO:0003723 ... Q9BZE1 38942792
    909749 8xt2:Ll (3.3) BS01 rna N/A GO:0005515 ... Q96DV4 38942792
    909750 8xt2:Ll (3.3) BS02 rna N/A GO:0005515 ... Q96DV4 38942792
    909751 8xt2:Ln (3.3) BS01 rna N/A GO:0003723 ... Q9NQ50 38942792
    909752 8xt2:Lo (3.3) BS01 rna N/A GO:0003723 ... Q8IXM3 38942792
    909753 8xt2:Lp (3.3) BS01 rna N/A GO:0003723 ... Q9Y6G3 38942792
    909754 8xt2:Lq (3.3) BS01 rna N/A GO:0003723 ... Q8N983 38942792
    909755 8xt2:Lr (3.3) BS01 rna N/A GO:0003723 ... Q9H9J2 38942792
    909756 8xt2:Lu (3.3) BS01 rna N/A GO:0003735 ... Q9HD33 38942792
    909757 8xt2:Lv (3.3) BS01 rna N/A GO:0005515 ... Q96GC5 38942792
    909758 8xt2:Lv (3.3) BS02 rna N/A GO:0005515 ... Q96GC5 38942792
    909759 8xt2:Lw (3.3) BS01 rna N/A GO:0003735 ... Q13405 38942792
    909760 8xt2:Ly (3.3) BS01 rna N/A GO:0003735 ... Q4U2R6 38942792
    909761 8xt2:Lz (3.3) BS01 rna N/A GO:0003735 ... Q86TS9 38942792
    909762 8xt2:SB (3.3) BS01 rna N/A GO:0003735 ... Q9Y399 38942792
    909763 8xt2:SB (3.3) BS02 ZN N/A GO:0003735 ... Q9Y399 38942792
    909764 8xt2:SE (3.3) BS01 rna N/A GO:0003723 ... P82675 38942792
    909765 8xt2:SF (3.3) BS01 rna N/A GO:0003735 ... P82932 38942792
    909766 8xt2:SG (3.3) BS01 rna N/A GO:0000028 ... Q9Y2R9 38942792
    909767 8xt2:SI (3.3) BS01 rna N/A GO:0003723 ... P82933 38942792
    909768 8xt2:SJ (3.3) BS01 rna N/A GO:0005739 ... P82664 38942792
    909769 8xt2:SK (3.3) BS01 rna N/A GO:0003723 ... P82912 38942792
    909770 8xt2:SL (3.3) BS01 rna N/A GO:0003723 ... O15235 38942792
    909771 8xt2:SN (3.3) BS01 rna N/A GO:0003723 ... O60783 38942792
    909772 8xt2:SO (3.3) BS01 rna N/A GO:0003723 ... P82914 38942792
    909773 8xt2:SP (3.3) BS01 rna N/A GO:0003735 ... Q9Y3D3 38942792
    909774 8xt2:SQ (3.3) BS01 rna N/A GO:0003735 ... Q9Y2R5 38942792
    909775 8xt2:SR (3.3) BS01 rna N/A GO:0003735 ... Q9NVS2 38942792
    909776 8xt2:SS (3.3) BS01 rna N/A GO:0003735 ... Q9Y676 38942792
    909777 8xt2:SS (3.3) BS02 ZN N/A GO:0003735 ... Q9Y676 38942792
    909778 8xt2:ST (3.3) BS01 rna N/A GO:0003735 ... Q9Y3D5 38942792
    909779 8xt2:ST (3.3) BS02 ZN N/A GO:0003735 ... Q9Y3D5 38942792
    909780 8xt2:SW (3.3) BS01 rna N/A GO:0003723 ... P82921 38942792
    909781 8xt2:SY (3.3) BS01 rna N/A GO:0003723 ... Q9Y3D9 38942792
    909782 8xt2:SZ (3.3) BS01 rna N/A GO:0003723 ... Q96EL2 38942792
    909783 8xt2:Sa (3.3) BS01 rna N/A GO:0003735 ... P82663 38942792
    909784 8xt2:Sa (3.3) BS02 ZN N/A GO:0003735 ... P82663 38942792
    909785 8xt2:Sb (3.3) BS01 rna N/A GO:0003723 ... Q9BYN8 38942792
    909786 8xt2:Sc (3.3) BS01 rna N/A GO:0000049 ... Q92552 38942792
    909787 8xt2:Se (3.3) BS01 rna N/A GO:0003723 ... P51398 38942792
    909788 8xt2:Se (3.3) BS02 GDP N/A GO:0003723 ... P51398 38942792
    909789 8xt2:Sf (3.3) BS01 rna N/A GO:0003723 ... Q9NP92 38942792
    909790 8xt2:Si (3.3) BS01 rna N/A GO:0003735 ... Q9Y291 38942792
    909791 8xt2:Sj (3.3) BS01 rna N/A GO:0003735 ... P82930 38942792
    909792 8xt2:Sk (3.3) BS01 rna N/A GO:0003723 ... P82673 38942792
    909793 8xt2:Sm (3.3) BS01 rna N/A GO:0001650 ... Q96BP2 38942792
    909794 8xt2:Sn (3.3) BS01 rna N/A GO:0005515 ... Q9NWT8 38942792
    909795 8xt2:Sn (3.3) BS02 rna N/A GO:0005515 ... Q9NWT8 38942792
    909796 8xt3:L4 (3.1) BS01 rna N/A GO:0003723 ... Q6P161 38942792
    909797 8xt3:L6 (3.1) BS01 rna N/A GO:0003735 ... Q9BQC6 38942792
    909798 8xt3:L8 (3.1) BS01 rna N/A GO:0005515 ... Q8TAE8 38942792
    909799 8xt3:LB (3.1) BS01 rna N/A GO:0003723 ... Q5T653 38942792
    909800 8xt3:LC (3.1) BS01 rna N/A GO:0003723 ... P09001 38942792

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).