SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    909801 8xt3:LD (3.1) BS01 rna N/A GO:0003723 ... Q9BYD3 38942792
    909802 8xt3:LI (3.1) BS01 rna N/A GO:0003723 ... Q9BYD2 38942792
    909803 8xt3:LJ (3.1) BS01 rna N/A GO:0003723 ... Q7Z7H8 38942792
    909804 8xt3:LK (3.1) BS01 rna N/A GO:0003723 ... Q9Y3B7 38942792
    909805 8xt3:LM (3.1) BS01 rna N/A GO:0003723 ... Q9BYD1 38942792
    909806 8xt3:LN (3.1) BS01 rna N/A GO:0003723 ... Q6P1L8 38942792
    909807 8xt3:LO (3.1) BS01 rna N/A GO:0003723 ... Q9P015 38942792
    909808 8xt3:LP (3.1) BS01 rna N/A GO:0003735 ... Q9NX20 38942792
    909809 8xt3:LQ (3.1) BS01 rna N/A GO:0003735 ... Q9NRX2 38942792
    909810 8xt3:LR (3.1) BS01 rna N/A GO:0003723 ... Q9H0U6 38942792
    909811 8xt3:LR (3.1) BS02 rna N/A GO:0003723 ... Q9H0U6 38942792
    909812 8xt3:LS (3.1) BS01 rna N/A GO:0003735 ... P49406 38942792
    909813 8xt3:LT (3.1) BS01 rna N/A GO:0003723 ... Q9BYC9 38942792
    909814 8xt3:LU (3.1) BS01 rna N/A GO:0003723 ... Q7Z2W9 38942792
    909815 8xt3:LV (3.1) BS01 rna N/A GO:0003735 ... Q9NWU5 38942792
    909816 8xt3:LW (3.1) BS01 rna N/A GO:0001650 ... Q16540 38942792
    909817 8xt3:LX (3.1) BS01 rna N/A GO:0003723 ... Q96A35 38942792
    909818 8xt3:La (3.1) BS01 rna N/A GO:0003723 ... Q9P0M9 38942792
    909819 8xt3:Lb (3.1) BS01 rna N/A GO:0003723 ... Q13084 38942792
    909820 8xt3:Ld (3.1) BS01 rna N/A GO:0003735 ... Q8TCC3 38942792
    909821 8xt3:Lf (3.1) BS01 rna N/A GO:0003723 ... Q9BYC8 38942792
    909822 8xt3:Lf (3.1) BS02 ZN N/A GO:0003723 ... Q9BYC8 38942792
    909823 8xt3:Lg (3.1) BS01 rna N/A GO:0003735 ... O75394 38942792
    909824 8xt3:Lh (3.1) BS01 rna N/A GO:0003735 ... Q9BQ48 38942792
    909825 8xt3:Li (3.1) BS01 rna N/A GO:0003735 ... Q9NZE8 38942792
    909826 8xt3:Lj (3.1) BS01 rna N/A GO:0003735 ... Q9P0J6 38942792
    909827 8xt3:Lj (3.1) BS02 ZN N/A GO:0003735 ... Q9P0J6 38942792
    909828 8xt3:Lk (3.1) BS01 rna N/A GO:0003723 ... Q9BZE1 38942792
    909829 8xt3:Ll (3.1) BS01 rna N/A GO:0005515 ... Q96DV4 38942792
    909830 8xt3:Ll (3.1) BS02 rna N/A GO:0005515 ... Q96DV4 38942792
    909831 8xt3:Ln (3.1) BS01 rna N/A GO:0003723 ... Q9NQ50 38942792
    909832 8xt3:Lo (3.1) BS01 rna N/A GO:0003723 ... Q8IXM3 38942792
    909833 8xt3:Lp (3.1) BS01 rna N/A GO:0003723 ... Q9Y6G3 38942792
    909834 8xt3:Lq (3.1) BS01 rna N/A GO:0003723 ... Q8N983 38942792
    909835 8xt3:Lr (3.1) BS01 rna N/A GO:0003723 ... Q9H9J2 38942792
    909836 8xt3:Lu (3.1) BS01 rna N/A GO:0003735 ... Q9HD33 38942792
    909837 8xt3:Lv (3.1) BS01 rna N/A GO:0005515 ... Q96GC5 38942792
    909838 8xt3:Lv (3.1) BS02 rna N/A GO:0005515 ... Q96GC5 38942792
    909839 8xt3:Lw (3.1) BS01 rna N/A GO:0003735 ... Q13405 38942792
    909840 8xt3:Ly (3.1) BS01 rna N/A GO:0003735 ... Q4U2R6 38942792
    909841 8xt3:Lz (3.1) BS01 rna N/A GO:0003735 ... Q86TS9 38942792
    909842 8xt3:SR (3.1) BS01 rna N/A GO:0003735 ... Q9NVS2 38942792
    909843 8xt3:Sf (3.1) BS01 rna N/A GO:0003723 ... Q9NP92 38942792
    909844 8xtb:A (2.35) BS01 A1D5H N/A N/A N/A N/A
    909845 8xtb:B (2.35) BS01 A1D5H N/A N/A N/A N/A
    909846 8xtc:A (2.4) BS01 A1D5H N/A N/A N/A 39921299
    909847 8xtc:A (2.4) BS02 A1D5H N/A N/A N/A 39921299
    909848 8xtc:B (2.4) BS01 A1D5H N/A N/A N/A 39921299
    909849 8xte:A (1.99) BS01 SAH N/A GO:0005737 ... A0A0B5L781 39150221
    909850 8xte:A (1.99) BS02 A1LWB N/A GO:0005737 ... A0A0B5L781 39150221
    909851 8xte:B (1.99) BS01 SAH N/A GO:0005737 ... A0A0B5L781 39150221
    909852 8xte:B (1.99) BS02 A1LWB N/A GO:0005737 ... A0A0B5L781 39150221
    909853 8xte:C (1.99) BS01 SAH N/A GO:0005737 ... A0A0B5L781 39150221
    909854 8xte:C (1.99) BS02 A1LWB N/A GO:0005737 ... A0A0B5L781 39150221
    909855 8xte:D (1.99) BS01 SAH N/A GO:0005737 ... A0A0B5L781 39150221
    909856 8xte:D (1.99) BS02 A1LWB N/A GO:0005737 ... A0A0B5L781 39150221
    909857 8xte:E (1.99) BS01 SAH N/A GO:0005737 ... A0A0B5L781 39150221
    909858 8xte:E (1.99) BS02 A1LWB N/A GO:0005737 ... A0A0B5L781 39150221
    909859 8xte:F (1.99) BS01 SAH N/A GO:0005737 ... A0A0B5L781 39150221
    909860 8xte:F (1.99) BS02 A1LWB N/A GO:0005737 ... A0A0B5L781 39150221
    909861 8xtf:A (2.13) BS01 SAH N/A GO:0005737 ... A0A0B5L781 39150221
    909862 8xtf:A (2.13) BS02 A1LWC N/A GO:0005737 ... A0A0B5L781 39150221
    909863 8xtg:A (2.0) BS01 SAH N/A GO:0005737 ... A0A0B5L781 39150221
    909864 8xtg:A (2.0) BS02 A1LWD N/A GO:0005737 ... A0A0B5L781 39150221
    909865 8xtg:B (2.0) BS01 SAH N/A GO:0005737 ... A0A0B5L781 39150221
    909866 8xtg:B (2.0) BS02 A1LWD N/A GO:0005737 ... A0A0B5L781 39150221
    909867 8xtg:C (2.0) BS01 SAH N/A GO:0005737 ... A0A0B5L781 39150221
    909868 8xtg:C (2.0) BS02 A1LWD N/A GO:0005737 ... A0A0B5L781 39150221
    909869 8xtg:D (2.0) BS01 SAH N/A GO:0005737 ... A0A0B5L781 39150221
    909870 8xtg:D (2.0) BS02 A1LWD N/A GO:0005737 ... A0A0B5L781 39150221
    909871 8xtg:E (2.0) BS01 SAH N/A GO:0005737 ... A0A0B5L781 39150221
    909872 8xtg:E (2.0) BS02 A1LWD N/A GO:0005737 ... A0A0B5L781 39150221
    909873 8xtg:F (2.0) BS01 SAH N/A GO:0005737 ... A0A0B5L781 39150221
    909874 8xtg:F (2.0) BS02 A1LWD N/A GO:0005737 ... A0A0B5L781 39150221
    909875 8xtu:A (2.5) BS01 GDP N/A N/A Q6VN21 N/A
    909876 8xtv:A (1.994) BS01 CO N/A N/A Q16FX9 N/A
    909877 8xtv:A (1.994) BS02 A1LW3 N/A N/A Q16FX9 N/A
    909878 8xtv:B (1.994) BS01 CO N/A N/A Q16FX9 N/A
    909879 8xtv:B (1.994) BS02 A1LW3 N/A N/A Q16FX9 N/A
    909880 8xty:A (2.7) BS01 A1LWL N/A N/A P42212
    Q16572
    N/A
    909881 8xtz:A (1.85) BS01 A1LWM N/A N/A B5M9L6 N/A
    909882 8xtz:A (1.85) BS02 FAD N/A N/A B5M9L6 N/A
    909883 8xtz:B (1.85) BS01 A1LWM N/A N/A B5M9L6 N/A
    909884 8xtz:B (1.85) BS02 FAD N/A N/A B5M9L6 N/A
    909885 8xu1:A (2.46) BS01 OAA N/A N/A A0A7C6A739 N/A
    909886 8xu1:B (2.46) BS01 OAA N/A N/A A0A7C6A739 N/A
    909887 8xu1:C (2.46) BS01 OAA N/A N/A A0A7C6A739 N/A
    909888 8xu3:A (1.82) BS01 NPO N/A N/A A0A2P4SYK2 N/A
    909889 8xu3:A (1.82) BS02 A3P N/A N/A A0A2P4SYK2 N/A
    909890 8xu7:A (2.2) BS01 FAD N/A N/A B5M9L6 N/A
    909891 8xu7:A (2.2) BS02 LSB N/A N/A B5M9L6 N/A
    909892 8xu7:B (2.2) BS01 FAD N/A N/A B5M9L6 N/A
    909893 8xu7:B (2.2) BS02 LSB N/A N/A B5M9L6 N/A
    909894 8xu7:B (2.2) BS03 LSB N/A N/A B5M9L6 N/A
    909895 8xu8:D (3.4) BS01 rna N/A GO:0002181 ... P0CX45 N/A
    909896 8xu8:D (3.4) BS02 rna N/A GO:0002181 ... P0CX45 N/A
    909897 8xu8:E (3.4) BS01 rna N/A GO:0000027 ... P14126 N/A
    909898 8xu8:F (3.4) BS01 rna N/A GO:0002181 ... P10664 N/A
    909899 8xu8:F (3.4) BS02 rna N/A GO:0002181 ... P10664 N/A
    909900 8xu8:G (3.4) BS01 rna N/A GO:0000027 ... P26321 N/A
    909901 8xu8:G (3.4) BS02 rna N/A GO:0000027 ... P26321 N/A
    909902 8xu8:H (3.4) BS01 rna N/A GO:0000027 ... P05739 N/A
    909903 8xu8:I (3.4) BS01 rna N/A GO:0000463 ... P05737 N/A
    909904 8xu8:I (3.4) BS02 rna N/A GO:0000463 ... P05737 N/A
    909905 8xu8:J (3.4) BS01 rna N/A GO:0000470 ... P17076 N/A
    909906 8xu8:J (3.4) BS02 rna N/A GO:0000470 ... P17076 N/A
    909907 8xu8:K (3.4) BS01 rna N/A GO:0002181 ... P05738 N/A
    909908 8xu8:L (3.4) BS01 rna N/A GO:0000027 ... P41805 N/A
    909909 8xu8:L (3.4) BS02 rna N/A GO:0000027 ... P41805 N/A
    909910 8xu8:L (3.4) BS03 rna N/A GO:0000027 ... P41805 N/A
    909911 8xu8:L (3.4) BS04 rna N/A GO:0000027 ... P41805 N/A
    909912 8xu8:M (3.4) BS01 rna N/A GO:0000027 ... Q3E757 N/A
    909913 8xu8:M (3.4) BS02 rna N/A GO:0000027 ... Q3E757 N/A
    909914 8xu8:M (3.4) BS03 rna N/A GO:0000027 ... Q3E757 N/A
    909915 8xu8:N (3.4) BS01 rna N/A GO:0002181 ... Q12690 N/A
    909916 8xu8:O (3.4) BS01 rna N/A GO:0000027 ... P36105 N/A
    909917 8xu8:P (3.4) BS01 rna N/A GO:0002181 ... P05748 N/A
    909918 8xu8:P (3.4) BS02 rna N/A GO:0002181 ... P05748 N/A
    909919 8xu8:Q (3.4) BS01 rna N/A GO:0000470 ... P26784 N/A
    909920 8xu8:R (3.4) BS01 rna N/A GO:0000448 ... P05740 N/A
    909921 8xu8:R (3.4) BS02 rna N/A GO:0000448 ... P05740 N/A
    909922 8xu8:S (3.4) BS01 rna N/A GO:0002181 ... P0CX49 N/A
    909923 8xu8:SA (3.4) BS01 rna N/A GO:0000054 ... P05750 N/A
    909924 8xu8:SB (3.4) BS01 rna N/A GO:0000028 ... P26783 N/A
    909925 8xu8:SC (3.4) BS01 rna N/A N/A Q08745 N/A
    909926 8xu8:SD (3.4) BS01 rna N/A N/A P48589 N/A
    909927 8xu8:SE (3.4) BS01 rna N/A N/A Q01855 N/A
    909928 8xu8:SF (3.4) BS01 rna N/A GO:0000462 ... P0CX51 N/A
    909929 8xu8:SG (3.4) BS01 rna N/A N/A P02407 N/A
    909930 8xu8:SH (3.4) BS01 rna N/A GO:0000054 ... P0CX55 N/A
    909931 8xu8:SI (3.4) BS01 rna N/A GO:0000028 ... P07280 N/A
    909932 8xu8:SJ (3.4) BS01 rna N/A N/A P38701 N/A
    909933 8xu8:SK (3.4) BS01 rna N/A GO:0002181 ... Q3E792 N/A
    909934 8xu8:SK (3.4) BS02 rna N/A GO:0002181 ... Q3E792 N/A
    909935 8xu8:SL (3.4) BS01 rna N/A GO:0000028 ... Q3E7X9 N/A
    909936 8xu8:SM (3.4) BS01 rna N/A GO:0002181 ... P41057 N/A
    909937 8xu8:SN (3.4) BS01 rna N/A N/A P05759 N/A
    909938 8xu8:SO (3.4) BS01 rna N/A GO:0001965 ... P38011 N/A
    909939 8xu8:SP (3.4) BS01 rna N/A N/A P32905 N/A
    909940 8xu8:SQ (3.4) BS01 rna N/A GO:0000462 ... P33442 N/A
    909941 8xu8:SR (3.4) BS01 rna N/A N/A P25443 N/A
    909942 8xu8:SS (3.4) BS01 rna N/A GO:0002181 ... P0CX35 N/A
    909943 8xu8:ST (3.4) BS01 rna N/A GO:0000462 ... P0CX37 N/A
    909944 8xu8:SU (3.4) BS01 rna N/A GO:0002181 ... P26786 N/A
    909945 8xu8:SV (3.4) BS01 rna N/A GO:0000462 ... P0CX39 N/A
    909946 8xu8:SV (3.4) BS02 rna N/A GO:0000462 ... P0CX39 N/A
    909947 8xu8:SW (3.4) BS01 rna N/A GO:0000462 ... O13516 N/A
    909948 8xu8:SX (3.4) BS01 rna N/A GO:0000028 ... P0CX47 N/A
    909949 8xu8:SY (3.4) BS01 rna N/A GO:0000462 ... P05756 N/A
    909950 8xu8:SZ (3.4) BS01 rna N/A GO:0000028 ... P39516 N/A
    909951 8xu8:Sa (3.4) BS01 rna N/A GO:0000447 ... P0C0V8 N/A
    909952 8xu8:Sb (3.4) BS01 rna N/A GO:0002181 ... P0C0W1 N/A
    909953 8xu8:Sc (3.4) BS01 rna N/A GO:0000462 ... P0CX29 N/A
    909954 8xu8:Sd (3.4) BS01 rna N/A GO:0000462 ... P0CX31 N/A
    909955 8xu8:Se (3.4) BS01 rna N/A N/A P39938 N/A
    909956 8xu8:Sf (3.4) BS01 rna N/A GO:0000028 ... P35997 N/A
    909957 8xu8:Sg (3.4) BS01 rna N/A GO:0002181 ... P0CX33 N/A
    909958 8xu8:T (3.4) BS01 rna N/A GO:0002181 ... P0CX82 N/A
    909959 8xu8:T (3.4) BS02 rna N/A GO:0002181 ... P0CX82 N/A
    909960 8xu8:U (3.4) BS01 rna N/A GO:0002181 ... P0CX23 N/A
    909961 8xu8:U (3.4) BS02 rna N/A GO:0002181 ... P0CX23 N/A
    909962 8xu8:V (3.4) BS01 rna N/A GO:0002181 ... Q02753 N/A
    909963 8xu8:V (3.4) BS02 rna N/A GO:0002181 ... Q02753 N/A
    909964 8xu8:W (3.4) BS01 rna N/A N/A P05749 N/A
    909965 8xu8:X (3.4) BS01 rna N/A GO:0002181 ... P0CX41 N/A
    909966 8xu8:Y (3.4) BS01 rna N/A N/A P04449 N/A
    909967 8xu8:Z (3.4) BS01 rna N/A N/A P04456 N/A
    909968 8xu8:Z (3.4) BS02 rna N/A N/A P04456 N/A
    909969 8xu8:a (3.4) BS01 rna N/A GO:0002181 ... P05743 N/A
    909970 8xu8:a (3.4) BS02 rna N/A GO:0002181 ... P05743 N/A
    909971 8xu8:b (3.4) BS01 rna N/A GO:0002181 ... P0C2H6 N/A
    909972 8xu8:c (3.4) BS01 rna N/A GO:0002181 ... P02406 N/A
    909973 8xu8:d (3.4) BS01 rna N/A GO:0002181 ... P05747 N/A
    909974 8xu8:e (3.4) BS01 rna N/A GO:0002181 ... P14120 N/A
    909975 8xu8:f (3.4) BS01 rna N/A GO:0002181 ... P0C2H8 N/A
    909976 8xu8:g (3.4) BS01 rna N/A GO:0002181 ... P38061 N/A
    909977 8xu8:h (3.4) BS01 rna N/A GO:0000027 ... P05744 N/A
    909978 8xu8:i (3.4) BS01 rna N/A GO:0002181 ... P87262 N/A
    909979 8xu8:j (3.4) BS01 rna N/A GO:0000463 ... P0CX84 N/A
    909980 8xu8:j (3.4) BS02 rna N/A GO:0000463 ... P0CX84 N/A
    909981 8xu8:k (3.4) BS01 rna N/A GO:0002181 ... P05745 N/A
    909982 8xu8:l (3.4) BS01 rna N/A GO:0000448 ... P49166 N/A
    909983 8xu8:l (3.4) BS02 rna N/A GO:0000448 ... P49166 N/A
    909984 8xu8:m (3.4) BS01 rna N/A GO:0002181 ... P49167 N/A
    909985 8xu8:n (3.4) BS01 rna N/A GO:0002181 ... P04650 N/A
    909986 8xu8:n (3.4) BS02 rna N/A GO:0002181 ... P04650 N/A
    909987 8xu8:o (3.4) BS01 rna N/A N/A P0CH08 N/A
    909988 8xu8:q (3.4) BS01 rna N/A GO:0002181 ... P0CX27 N/A
    909989 8xu8:r (3.4) BS01 rna N/A GO:0002181 ... P0CX25 N/A
    909990 8xu8:x (3.4) BS01 rna N/A GO:0003746 ... P32324 N/A
    909991 8xu8:x (3.4) BS02 rna N/A GO:0003746 ... P32324 N/A
    909992 8xu9:A (2.217) BS01 CO N/A N/A P93836 N/A
    909993 8xu9:A (2.217) BS02 A1LW4 N/A N/A P93836 N/A
    909994 8xua:A (2.7) BS01 C8E N/A N/A K5UDK4 N/A
    909995 8xua:A (2.7) BS02 C8E N/A N/A K5UDK4 N/A
    909996 8xua:A (2.7) BS03 C8E N/A N/A K5UDK4 N/A
    909997 8xua:A (2.7) BS04 C8E N/A N/A K5UDK4 N/A
    909998 8xua:A (2.7) BS05 C8E N/A N/A K5UDK4 N/A
    909999 8xua:B (2.7) BS01 C8E N/A N/A K5UDK4 N/A
    910000 8xua:B (2.7) BS02 C8E N/A N/A K5UDK4 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).