SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    910201 8xvf:H (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    910202 8xvg:A (9.4) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    910203 8xvg:B (9.4) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    910204 8xvg:B (9.4) BS02 ADP N/A GO:0000492 ... Q9Y230 39154037
    910205 8xvg:C (9.4) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    910206 8xvg:D (9.4) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    910207 8xvg:E (9.4) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    910208 8xvg:F (9.4) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    910209 8xvg:I (9.4) BS01 ADP N/A GO:0000723 ... O96019 39154037
    910210 8xvg:J (9.4) BS01 ADP N/A GO:0000723 ... O96019 39154037
    910211 8xvg:K (9.4) BS01 ADP N/A GO:0000776 ... P60709 39154037
    910212 8xvg:L (9.4) BS01 IHP N/A GO:0000124 ... Q9Y4A5 39154037
    910213 8xvh:R (3.26) BS01 peptide N/A GO:0004930 ... P24530
    Q59310
    39075075
    910214 8xvi:R (3.32) BS01 peptide N/A GO:0004553 ... P16218
    P25101
    39075075
    910215 8xvj:R (3.26) BS01 A1D5I N/A GO:0004553 ... P0ABE7
    P16218
    P25101
    39075075
    910216 8xvk:R (3.21) BS01 A1D5J N/A GO:0004553 ... P0ABE7
    P16218
    P25101
    39075075
    910217 8xvl:R (3.22) BS01 A1D5L N/A GO:0004553 ... P0ABE7
    P16218
    P25101
    39075075
    910218 8xvm:D (2.77) BS01 MAN N/A N/A Q9BYF1 39375326
    910219 8xvp:A (1.98) BS01 CA N/A N/A Q8GP32 N/A
    910220 8xvp:A (1.98) BS02 CA N/A N/A Q8GP32 N/A
    910221 8xvp:A (1.98) BS03 CA N/A N/A Q8GP32 N/A
    910222 8xvp:B (1.98) BS01 CA N/A N/A Q8GP32 N/A
    910223 8xvp:B (1.98) BS02 CA N/A N/A Q8GP32 N/A
    910224 8xvp:B (1.98) BS03 CA N/A N/A Q8GP32 N/A
    910225 8xvq:A (2.14) BS01 FRU N/A N/A Q8GP32 N/A
    910226 8xvq:A (2.14) BS02 CA N/A N/A Q8GP32 N/A
    910227 8xvq:A (2.14) BS03 CA N/A N/A Q8GP32 N/A
    910228 8xvq:B (2.14) BS01 FRU N/A N/A Q8GP32 N/A
    910229 8xvq:B (2.14) BS02 CA N/A N/A Q8GP32 N/A
    910230 8xvq:B (2.14) BS03 CA N/A N/A Q8GP32 N/A
    910231 8xvr:A (2.44) BS01 CA N/A N/A N/A N/A
    910232 8xvr:A (2.44) BS02 CA N/A N/A N/A N/A
    910233 8xvr:B (2.44) BS01 CA N/A N/A N/A N/A
    910234 8xvr:B (2.44) BS02 CA N/A N/A N/A N/A
    910235 8xvr:C (2.44) BS01 CA N/A N/A N/A N/A
    910236 8xvr:C (2.44) BS02 CA N/A N/A N/A N/A
    910237 8xvr:D (2.44) BS01 CA N/A N/A N/A N/A
    910238 8xvr:D (2.44) BS02 CA N/A N/A N/A N/A
    910239 8xvt:A (3.2) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    910240 8xvt:B (3.2) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    910241 8xvt:B (3.2) BS02 ADP N/A GO:0000492 ... Q9Y230 39154037
    910242 8xvt:C (3.2) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    910243 8xvt:D (3.2) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    910244 8xvt:E (3.2) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    910245 8xvt:F (3.2) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    910246 8xvt:I (3.2) BS01 ADP N/A GO:0000723 ... O96019 39154037
    910247 8xvt:J (3.2) BS01 ADP N/A GO:0000723 ... O96019 39154037
    910248 8xvt:K (3.2) BS01 ADP N/A GO:0000776 ... P60709 39154037
    910249 8xvv:L (3.2) BS01 IHP N/A GO:0000124 ... Q9Y4A5 39154037
    910250 8xw0:A (3.11) BS01 P5S ? GO:0000325 ... Q9C8G5 38570680
    910251 8xw0:A (3.11) BS02 P5S ? GO:0000325 ... Q9C8G5 38570680
    910252 8xw0:B (3.11) BS01 P5S ? GO:0000325 ... Q9C8G5 38570680
    910253 8xw0:B (3.11) BS02 P5S ? GO:0000325 ... Q9C8G5 38570680
    910254 8xw6:A (1.99) BS01 MG N/A GO:0000287 ... Q8DQ84 39009072
    910255 8xw6:A (1.99) BS02 OXL N/A GO:0000287 ... Q8DQ84 39009072
    910256 8xw6:A (1.99) BS03 ATP N/A GO:0000287 ... Q8DQ84 39009072
    910257 8xw6:A (1.99) BS04 FBP N/A GO:0000287 ... Q8DQ84 39009072
    910258 8xw6:B (1.99) BS01 MG N/A GO:0000287 ... Q8DQ84 39009072
    910259 8xw6:B (1.99) BS02 OXL N/A GO:0000287 ... Q8DQ84 39009072
    910260 8xw6:B (1.99) BS03 FBP N/A GO:0000287 ... Q8DQ84 39009072
    910261 8xw7:A (2.1) BS01 MG N/A GO:0000287 ... Q8DQ84 39009072
    910262 8xw7:A (2.1) BS02 FBP N/A GO:0000287 ... Q8DQ84 39009072
    910263 8xw7:A (2.1) BS03 OXL N/A GO:0000287 ... Q8DQ84 39009072
    910264 8xw7:A (2.1) BS04 ADP N/A GO:0000287 ... Q8DQ84 39009072
    910265 8xw7:B (2.1) BS01 MG N/A GO:0000287 ... Q8DQ84 39009072
    910266 8xw7:B (2.1) BS02 FBP N/A GO:0000287 ... Q8DQ84 39009072
    910267 8xw7:B (2.1) BS03 OXL N/A GO:0000287 ... Q8DQ84 39009072
    910268 8xw7:B (2.1) BS04 ADP N/A GO:0000287 ... Q8DQ84 39009072
    910269 8xw8:A (2.0) BS01 MG N/A GO:0000287 ... Q8DQ84 39009072
    910270 8xw8:A (2.0) BS02 FBP N/A GO:0000287 ... Q8DQ84 39009072
    910271 8xw8:A (2.0) BS03 GDP N/A GO:0000287 ... Q8DQ84 39009072
    910272 8xw8:A (2.0) BS04 OXL N/A GO:0000287 ... Q8DQ84 39009072
    910273 8xw8:B (2.0) BS01 MG N/A GO:0000287 ... Q8DQ84 39009072
    910274 8xw8:B (2.0) BS02 FBP N/A GO:0000287 ... Q8DQ84 39009072
    910275 8xw8:B (2.0) BS03 GDP N/A GO:0000287 ... Q8DQ84 39009072
    910276 8xw8:B (2.0) BS04 OXL N/A GO:0000287 ... Q8DQ84 39009072
    910277 8xw8:C (2.0) BS01 MG N/A GO:0000287 ... Q8DQ84 39009072
    910278 8xw8:C (2.0) BS02 FBP N/A GO:0000287 ... Q8DQ84 39009072
    910279 8xw8:C (2.0) BS03 GDP N/A GO:0000287 ... Q8DQ84 39009072
    910280 8xw8:C (2.0) BS04 OXL N/A GO:0000287 ... Q8DQ84 39009072
    910281 8xw8:D (2.0) BS01 MG N/A GO:0000287 ... Q8DQ84 39009072
    910282 8xw8:D (2.0) BS02 FBP N/A GO:0000287 ... Q8DQ84 39009072
    910283 8xw8:D (2.0) BS03 GDP N/A GO:0000287 ... Q8DQ84 39009072
    910284 8xw8:D (2.0) BS04 OXL N/A GO:0000287 ... Q8DQ84 39009072
    910285 8xw9:A (1.75) BS01 MG N/A GO:0000287 ... Q8DQ84 39009072
    910286 8xw9:A (1.75) BS02 OXL N/A GO:0000287 ... Q8DQ84 39009072
    910287 8xw9:A (1.75) BS03 FBP N/A GO:0000287 ... Q8DQ84 39009072
    910288 8xw9:A (1.75) BS04 UDP N/A GO:0000287 ... Q8DQ84 39009072
    910289 8xw9:B (1.75) BS01 MG N/A GO:0000287 ... Q8DQ84 39009072
    910290 8xw9:B (1.75) BS02 OXL N/A GO:0000287 ... Q8DQ84 39009072
    910291 8xw9:B (1.75) BS03 FBP N/A GO:0000287 ... Q8DQ84 39009072
    910292 8xwb:A (1.69) BS01 FE N/A GO:0004322 ... P02794 38878720
    910293 8xwb:A (1.69) BS02 FE N/A GO:0004322 ... P02794 38878720
    910294 8xwb:A (1.69) BS03 NO N/A GO:0004322 ... P02794 38878720
    910295 8xwo:A (3.4) BS01 C8E N/A N/A A0A454DK07 N/A
    910296 8xwo:A (3.4) BS02 C8E N/A N/A A0A454DK07 N/A
    910297 8xwo:C (3.4) BS01 C8E N/A N/A A0A454DK07 N/A
    910298 8xwo:D (3.4) BS01 MIY N/A N/A A0A454DK07 N/A
    910299 8xwo:D (3.4) BS02 C8E N/A N/A A0A454DK07 N/A
    910300 8xwp:R (3.21) BS01 peptide N/A N/A P24530 39414992
    910301 8xwq:R (4.6) BS01 peptide N/A N/A P24530 39414992
    910302 8xwr:A (1.7) BS01 peptide N/A N/A P0DTD1 N/A
    910303 8xwt:A (1.7) BS01 peptide N/A N/A P0DTD1 N/A
    910304 8xww:A (2.46) BS01 A1D5K N/A N/A O76074 N/A
    910305 8xww:A (2.46) BS02 ZN N/A N/A O76074 N/A
    910306 8xx4:A (2.6) BS01 rna N/A N/A A0A3S7XUW7 39779680
    910307 8xx4:A (2.6) BS02 dna N/A N/A A0A3S7XUW7 39779680
    910308 8xx4:A (2.6) BS03 ZN N/A N/A A0A3S7XUW7 39779680
    910309 8xx4:A (2.6) BS04 ZN N/A N/A A0A3S7XUW7 39779680
    910310 8xx4:A (2.6) BS05 MG N/A N/A A0A3S7XUW7 39779680
    910311 8xx4:B (2.6) BS01 rna N/A N/A A0A2X0RU95 39779680
    910312 8xx4:B (2.6) BS02 dna N/A N/A A0A2X0RU95 39779680
    910313 8xx4:B (2.6) BS03 ZN N/A N/A A0A2X0RU95 39779680
    910314 8xx4:G (2.6) BS01 ZN N/A N/A A0A0A1DYD1 39779680
    910315 8xx4:G (2.6) BS02 ZN N/A N/A A0A0A1DYD1 39779680
    910316 8xx4:H (2.6) BS01 ZN N/A N/A A0A0A1E360 39779680
    910317 8xx5:A (2.4) BS01 ZN N/A N/A A0A3S7XUW7 39779680
    910318 8xx5:A (2.4) BS02 ZN N/A N/A A0A3S7XUW7 39779680
    910319 8xx5:A (2.4) BS03 MG N/A N/A A0A3S7XUW7 39779680
    910320 8xx5:B (2.4) BS01 ZN N/A N/A A0A2X0RU95 39779680
    910321 8xx5:G (2.4) BS01 ZN N/A N/A A0A0A1DYD1 39779680
    910322 8xx5:G (2.4) BS02 ZN N/A N/A A0A0A1DYD1 39779680
    910323 8xx5:H (2.4) BS01 ZN N/A N/A A0A0C5BCR6 39779680
    910324 8xx5:I (2.4) BS01 ZN N/A N/A A0A2X0SDX8 39779680
    910325 8xx8:A (2.63) BS01 RET N/A GO:0007602 ... A0A5B2VFD4 39305959
    910326 8xx8:B (2.63) BS01 RET N/A GO:0007602 ... A0A5B2VFD4 39305959
    910327 8xx8:C (2.63) BS01 RET N/A GO:0007602 ... A0A5B2VFD4 39305959
    910328 8xx8:D (2.63) BS01 RET N/A GO:0007602 ... A0A5B2VFD4 39305959
    910329 8xx8:E (2.63) BS01 RET N/A GO:0007602 ... A0A5B2VFD4 39305959
    910330 8xx8:F (2.63) BS01 RET N/A GO:0007602 ... A0A5B2VFD4 39305959
    910331 8xx9:A (1.55) BS01 MN 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    910332 8xx9:A (1.55) BS02 CA 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    910333 8xxa:A (1.55) BS01 BGC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    910334 8xxa:A (1.55) BS02 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    910335 8xxa:A (1.55) BS03 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    910336 8xxa:A (1.55) BS04 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    910337 8xxa:A (1.55) BS05 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    910338 8xxa:A (1.55) BS06 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    910339 8xxa:A (1.55) BS07 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    910340 8xxa:A (1.55) BS08 MN 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    910341 8xxa:A (1.55) BS09 CA 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    910342 8xxc:E (2.03) BS01 OAA N/A N/A A0A1G6J5C0 N/A
    910343 8xxc:F (2.03) BS01 OAA N/A N/A A0A1G6J5C0 N/A
    910344 8xxd:A (2.32) BS01 COA N/A N/A A0A0S3QTD0 N/A
    910345 8xxd:A (2.32) BS02 OAA N/A N/A A0A0S3QTD0 N/A
    910346 8xxd:B (2.32) BS01 OAA N/A N/A A0A0S3QTD0 N/A
    910347 8xxd:C (2.32) BS01 COA N/A N/A A0A0S3QTD0 N/A
    910348 8xxe:A (2.08) BS01 OAA N/A N/A A0A0S3QTD0 N/A
    910349 8xxe:A (2.08) BS02 COA N/A N/A A0A0S3QTD0 N/A
    910350 8xxe:A (2.08) BS03 COA N/A N/A A0A0S3QTD0 N/A
    910351 8xxe:B (2.08) BS01 OAA N/A N/A A0A0S3QTD0 N/A
    910352 8xxe:B (2.08) BS02 COA N/A N/A A0A0S3QTD0 N/A
    910353 8xxe:C (2.08) BS01 OAA N/A N/A A0A0S3QTD0 N/A
    910354 8xxe:C (2.08) BS02 COA N/A N/A A0A0S3QTD0 N/A
    910355 8xxf:A (2.33) BS01 OAA N/A N/A A0A0S3QTD0 N/A
    910356 8xxf:A (2.33) BS02 ACO N/A N/A A0A0S3QTD0 N/A
    910357 8xxf:B (2.33) BS01 ACO N/A N/A A0A0S3QTD0 N/A
    910358 8xxf:B (2.33) BS02 OAA N/A N/A A0A0S3QTD0 N/A
    910359 8xxf:D (2.33) BS01 OAA N/A N/A A0A0S3QTD0 N/A
    910360 8xxf:D (2.33) BS02 COA N/A N/A A0A0S3QTD0 N/A
    910361 8xxf:E (2.33) BS01 OAA N/A N/A A0A0S3QTD0 N/A
    910362 8xxf:F (2.33) BS01 OAA N/A N/A A0A0S3QTD0 N/A
    910363 8xxf:F (2.33) BS02 ACO N/A N/A A0A0S3QTD0 N/A
    910364 8xxi:A (3.04) BS01 LEU N/A N/A Q9UM01 N/A
    910365 8xxl:CD (2.9) BS01 rna ? GO:0003723 ... Q53EL6 38641729
    910366 8xxl:SA (2.9) BS01 rna ? GO:0000028 ... P08865 38641729
    910367 8xxl:SB (2.9) BS01 rna ? GO:0002181 ... P61247 38641729
    910368 8xxl:SC (2.9) BS01 rna ? GO:0002181 ... P15880 38641729
    910369 8xxl:SD (2.9) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38641729
    910370 8xxl:SE (2.9) BS01 rna ? GO:0002181 ... P62701 38641729
    910371 8xxl:SF (2.9) BS01 rna ? GO:0000028 ... P46782 38641729
    910372 8xxl:SG (2.9) BS01 rna ? GO:0000082 ... P62753 38641729
    910373 8xxl:SH (2.9) BS01 rna ? GO:0001843 ... P62081 38641729
    910374 8xxl:SI (2.9) BS01 rna ? GO:0000462 ... P62241 38641729
    910375 8xxl:SJ (2.9) BS01 rna ? GO:0002181 ... P46781 38641729
    910376 8xxl:SK (2.9) BS01 rna ? GO:0002181 ... P46783 38641729
    910377 8xxl:SL (2.9) BS01 rna ? GO:0002181 ... P62280 38641729
    910378 8xxl:SM (2.9) BS01 rna ? GO:0002181 ... P25398 38641729
    910379 8xxl:SN (2.9) BS01 rna ? GO:0002181 ... P62277 38641729
    910380 8xxl:SO (2.9) BS01 rna ? GO:0000028 ... P62263 38641729
    910381 8xxl:SP (2.9) BS01 rna ? GO:0000028 ... P62841 38641729
    910382 8xxl:SQ (2.9) BS01 rna ? GO:0000462 ... P62249 38641729
    910383 8xxl:SR (2.9) BS01 rna ? GO:0002181 ... P08708 38641729
    910384 8xxl:SS (2.9) BS01 rna ? GO:0002181 ... P62269 38641729
    910385 8xxl:ST (2.9) BS01 rna ? GO:0000028 ... P39019 38641729
    910386 8xxl:SU (2.9) BS01 rna ? GO:0002181 ... P60866 38641729
    910387 8xxl:SW (2.9) BS01 rna ? GO:0002181 ... P62244 38641729
    910388 8xxl:SX (2.9) BS01 rna ? GO:0002181 ... P62266 38641729
    910389 8xxl:SY (2.9) BS01 rna ? GO:0002181 ... P62847 38641729
    910390 8xxl:SZ (2.9) BS01 rna ? GO:0002181 ... P62851 38641729
    910391 8xxl:Sa (2.9) BS01 rna ? GO:0002181 ... P62854 38641729
    910392 8xxl:Sa (2.9) BS02 ZN ? GO:0002181 ... P62854 38641729
    910393 8xxl:Sb (2.9) BS01 rna ? GO:0000028 ... P42677 38641729
    910394 8xxl:Sc (2.9) BS01 rna ? GO:0000028 ... P62857 38641729
    910395 8xxl:Sd (2.9) BS01 rna ? GO:0002181 ... P62273 38641729
    910396 8xxl:Sd (2.9) BS02 ZN ? GO:0002181 ... P62273 38641729
    910397 8xxl:Se (2.9) BS01 rna ? GO:0003735 ... P62861 38641729
    910398 8xxl:Sf (2.9) BS01 rna ? GO:0002181 ... P62979 38641729
    910399 8xxl:Sg (2.9) BS01 rna ? GO:0001891 ... P63244 38641729
    910400 8xxm:3G (3.2) BS01 rna ? GO:0001732 ... O75821 38641729

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).