SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    910601 8y07:A (2.85) BS03 dna N/A N/A N/A 39676682
    910602 8y07:A (2.85) BS04 dna N/A N/A N/A 39676682
    910603 8y07:E (2.85) BS01 rna N/A N/A N/A 39676682
    910604 8y07:E (2.85) BS02 dna N/A N/A N/A 39676682
    910605 8y07:E (2.85) BS03 dna N/A N/A N/A 39676682
    910606 8y07:E (2.85) BS04 rna N/A N/A N/A 39676682
    910607 8y08:A (3.64) BS01 rna N/A N/A N/A 39676682
    910608 8y08:A (3.64) BS02 dna N/A N/A N/A 39676682
    910609 8y08:A (3.64) BS03 dna N/A N/A N/A 39676682
    910610 8y08:E (3.64) BS01 rna N/A N/A N/A 39676682
    910611 8y08:E (3.64) BS02 dna N/A N/A N/A 39676682
    910612 8y08:E (3.64) BS03 dna N/A N/A N/A 39676682
    910613 8y09:A (2.87) BS01 rna N/A N/A N/A 39676682
    910614 8y09:A (2.87) BS02 dna N/A N/A N/A 39676682
    910615 8y09:A (2.87) BS03 dna N/A N/A N/A 39676682
    910616 8y09:A (2.87) BS04 rna N/A N/A N/A 39676682
    910617 8y09:E (2.87) BS01 rna N/A N/A N/A 39676682
    910618 8y09:E (2.87) BS02 rna N/A N/A N/A 39676682
    910619 8y09:E (2.87) BS03 dna N/A N/A N/A 39676682
    910620 8y09:E (2.87) BS04 dna N/A N/A N/A 39676682
    910621 8y0a:A (3.51) BS01 rna N/A N/A N/A 39676682
    910622 8y0a:A (3.51) BS02 dna N/A N/A N/A 39676682
    910623 8y0a:A (3.51) BS03 dna N/A N/A N/A 39676682
    910624 8y0a:E (3.51) BS01 rna N/A N/A N/A 39676682
    910625 8y0a:E (3.51) BS02 dna N/A N/A N/A 39676682
    910626 8y0a:E (3.51) BS03 dna N/A N/A N/A 39676682
    910627 8y0b:A (2.3) BS01 rna N/A N/A N/A 39676682
    910628 8y0b:A (2.3) BS02 dna N/A N/A N/A 39676682
    910629 8y0b:A (2.3) BS03 dna N/A N/A N/A 39676682
    910630 8y0c:A (3.45) BS01 rna N/A N/A N/A 39676682
    910631 8y0c:A (3.45) BS02 dna N/A N/A N/A 39676682
    910632 8y0c:A (3.45) BS03 dna N/A N/A N/A 39676682
    910633 8y0d:A (3.92) BS01 rna N/A N/A N/A 39676682
    910634 8y0d:A (3.92) BS02 dna N/A N/A N/A 39676682
    910635 8y0e:A (3.0) BS01 ZN N/A N/A A0A3S7XUW7 39779680
    910636 8y0e:A (3.0) BS02 ZN N/A N/A A0A3S7XUW7 39779680
    910637 8y0e:A (3.0) BS03 MG N/A N/A A0A3S7XUW7 39779680
    910638 8y0e:B (3.0) BS01 ZN N/A N/A A0A2X0RU95 39779680
    910639 8y0e:G (3.0) BS01 ZN N/A N/A A0A0A1DYD1 39779680
    910640 8y0e:G (3.0) BS02 ZN N/A N/A A0A0A1DYD1 39779680
    910641 8y0e:H (3.0) BS01 ZN N/A N/A A0A0C5BCR6 39779680
    910642 8y0p:A (2.62) BS01 peptide ? GO:0007155 ... P35222 N/A
    910643 8y0p:A (2.62) BS02 PRO ? GO:0007155 ... P35222 N/A
    910644 8y0p:A (2.62) BS03 PRO ? GO:0007155 ... P35222 N/A
    910645 8y0p:B (2.62) BS01 PRO ? GO:0007155 ... P35222 N/A
    910646 8y0s:A () BS01 ZN N/A N/A N/A N/A
    910647 8y0s:A () BS02 ZN N/A N/A N/A N/A
    910648 8y0s:A () BS03 ZN N/A N/A N/A N/A
    910649 8y0s:B () BS01 ZN N/A N/A N/A N/A
    910650 8y0s:B () BS02 ZN N/A N/A N/A N/A
    910651 8y0s:B () BS03 ZN N/A N/A N/A N/A
    910652 8y0s:B () BS04 A1LXO N/A N/A N/A N/A
    910653 8y0s:C () BS01 ZN N/A N/A N/A N/A
    910654 8y0s:C () BS02 ZN N/A N/A N/A N/A
    910655 8y0s:C () BS03 ZN N/A N/A N/A N/A
    910656 8y0s:D () BS01 ZN N/A N/A N/A N/A
    910657 8y0s:D () BS02 ZN N/A N/A N/A N/A
    910658 8y0s:D () BS03 ZN N/A N/A N/A N/A
    910659 8y0u:5 (3.59) BS01 rna ? GO:0002182 ... P23301 38698775
    910660 8y0u:LA (3.59) BS01 rna ? GO:0002181 ... P0CX45 38698775
    910661 8y0u:LA (3.59) BS02 MG ? GO:0002181 ... P0CX45 38698775
    910662 8y0u:LB (3.59) BS01 rna ? GO:0000027 ... P14126 38698775
    910663 8y0u:LC (3.59) BS01 rna ? GO:0002181 ... P10664 38698775
    910664 8y0u:LC (3.59) BS02 rna ? GO:0002181 ... P10664 38698775
    910665 8y0u:LD (3.59) BS01 rna ? GO:0000027 ... P26321 38698775
    910666 8y0u:LD (3.59) BS02 rna ? GO:0000027 ... P26321 38698775
    910667 8y0u:LE (3.59) BS01 rna ? GO:0000027 ... P05739 38698775
    910668 8y0u:LF (3.59) BS01 rna ? GO:0000463 ... P05737 38698775
    910669 8y0u:LF (3.59) BS02 rna ? GO:0000463 ... P05737 38698775
    910670 8y0u:LG (3.59) BS01 rna ? GO:0000470 ... P17076 38698775
    910671 8y0u:LG (3.59) BS02 rna ? GO:0000470 ... P17076 38698775
    910672 8y0u:LH (3.59) BS01 rna ? GO:0002181 ... P05738 38698775
    910673 8y0u:LI (3.59) BS01 rna ? GO:0000027 ... P41805 38698775
    910674 8y0u:LI (3.59) BS02 rna ? GO:0000027 ... P41805 38698775
    910675 8y0u:LJ (3.59) BS01 rna ? GO:0000027 ... Q3E757 38698775
    910676 8y0u:LJ (3.59) BS02 rna ? GO:0000027 ... Q3E757 38698775
    910677 8y0u:LL (3.59) BS01 rna ? GO:0002181 ... Q12690 38698775
    910678 8y0u:LM (3.59) BS01 rna ? GO:0000027 ... P36105 38698775
    910679 8y0u:LN (3.59) BS01 rna ? GO:0002181 ... P05748 38698775
    910680 8y0u:LN (3.59) BS02 rna ? GO:0002181 ... P05748 38698775
    910681 8y0u:LN (3.59) BS03 MG ? GO:0002181 ... P05748 38698775
    910682 8y0u:LO (3.59) BS01 rna ? GO:0000470 ... P26784 38698775
    910683 8y0u:LP (3.59) BS01 rna ? GO:0000448 ... P05740 38698775
    910684 8y0u:LP (3.59) BS02 rna ? GO:0000448 ... P05740 38698775
    910685 8y0u:LQ (3.59) BS01 rna ? GO:0002181 ... P0CX49 38698775
    910686 8y0u:LR (3.59) BS01 rna ? GO:0002181 ... P0CX82 38698775
    910687 8y0u:LR (3.59) BS02 rna ? GO:0002181 ... P0CX82 38698775
    910688 8y0u:LS (3.59) BS01 rna ? GO:0002181 ... P0CX23 38698775
    910689 8y0u:LS (3.59) BS02 rna ? GO:0002181 ... P0CX23 38698775
    910690 8y0u:LT (3.59) BS01 rna ? GO:0002181 ... Q02753 38698775
    910691 8y0u:LT (3.59) BS02 rna ? GO:0002181 ... Q02753 38698775
    910692 8y0u:LU (3.59) BS01 rna ? GO:0002181 ... P05749 38698775
    910693 8y0u:LV (3.59) BS01 rna ? GO:0002181 ... P0CX41 38698775
    910694 8y0u:LW (3.59) BS01 rna ? GO:0002181 ... P04449 38698775
    910695 8y0u:LX (3.59) BS01 rna ? GO:0000027 ... P04456 38698775
    910696 8y0u:LX (3.59) BS02 rna ? GO:0000027 ... P04456 38698775
    910697 8y0u:LY (3.59) BS01 rna ? GO:0002181 ... P05743 38698775
    910698 8y0u:LY (3.59) BS02 rna ? GO:0002181 ... P05743 38698775
    910699 8y0u:LZ (3.59) BS01 rna ? GO:0002181 ... P0C2H6 38698775
    910700 8y0u:La (3.59) BS01 rna ? GO:0002181 ... P02406 38698775
    910701 8y0u:Lb (3.59) BS01 rna ? GO:0002181 ... P05747 38698775
    910702 8y0u:Lc (3.59) BS01 rna ? GO:0002181 ... P14120 38698775
    910703 8y0u:Ld (3.59) BS01 rna ? GO:0002181 ... P0C2H8 38698775
    910704 8y0u:Le (3.59) BS01 rna ? GO:0002181 ... P38061 38698775
    910705 8y0u:Le (3.59) BS02 MG ? GO:0002181 ... P38061 38698775
    910706 8y0u:Lf (3.59) BS01 rna ? GO:0000027 ... P05744 38698775
    910707 8y0u:Lg (3.59) BS01 rna ? GO:0002181 ... P87262 38698775
    910708 8y0u:Lg (3.59) BS02 ZN ? GO:0002181 ... P87262 38698775
    910709 8y0u:Lh (3.59) BS01 rna ? GO:0000463 ... P0CX84 38698775
    910710 8y0u:Lh (3.59) BS02 rna ? GO:0000463 ... P0CX84 38698775
    910711 8y0u:Li (3.59) BS01 rna ? GO:0002181 ... P05745 38698775
    910712 8y0u:Lj (3.59) BS01 rna ? GO:0000448 ... P49166 38698775
    910713 8y0u:Lj (3.59) BS02 rna ? GO:0000448 ... P49166 38698775
    910714 8y0u:Lj (3.59) BS03 ZN ? GO:0000448 ... P49166 38698775
    910715 8y0u:Lk (3.59) BS01 rna ? GO:0002181 ... P49167 38698775
    910716 8y0u:Ll (3.59) BS01 rna ? GO:0002181 ... P04650 38698775
    910717 8y0u:Ll (3.59) BS02 rna ? GO:0002181 ... P04650 38698775
    910718 8y0u:Lm (3.59) BS01 rna ? GO:0000027 ... P0CH08 38698775
    910719 8y0u:Lm (3.59) BS02 ZN ? GO:0000027 ... P0CH08 38698775
    910720 8y0u:Lo (3.59) BS01 rna ? GO:0002181 ... P0CX27 38698775
    910721 8y0u:Lo (3.59) BS02 ZN ? GO:0002181 ... P0CX27 38698775
    910722 8y0u:Lp (3.59) BS01 rna ? GO:0002181 ... P0CX25 38698775
    910723 8y0u:Lp (3.59) BS02 ZN ? GO:0002181 ... P0CX25 38698775
    910724 8y0u:P0 (3.59) BS01 rna ? GO:0000027 ... P05317 38698775
    910725 8y0u:P2 (3.59) BS01 rna ? GO:0000027 ... P0CX53 38698775
    910726 8y0u:SA (3.59) BS01 rna ? GO:0000028 ... P32905 38698775
    910727 8y0u:SB (3.59) BS01 rna ? GO:0000462 ... P33442 38698775
    910728 8y0u:SB (3.59) BS02 rna ? GO:0000462 ... P33442 38698775
    910729 8y0u:SC (3.59) BS01 rna ? GO:0000054 ... P25443 38698775
    910730 8y0u:SE (3.59) BS01 rna ? GO:0002181 ... P0CX35 38698775
    910731 8y0u:SE (3.59) BS02 MG ? GO:0002181 ... P0CX35 38698775
    910732 8y0u:SG (3.59) BS01 rna ? GO:0000462 ... P0CX37 38698775
    910733 8y0u:SH (3.59) BS01 rna ? GO:0002181 ... P26786 38698775
    910734 8y0u:SI (3.59) BS01 rna ? GO:0000462 ... P0CX39 38698775
    910735 8y0u:SI (3.59) BS02 rna ? GO:0000462 ... P0CX39 38698775
    910736 8y0u:SJ (3.59) BS01 rna ? GO:0000462 ... O13516 38698775
    910737 8y0u:SL (3.59) BS01 rna ? GO:0000028 ... P0CX47 38698775
    910738 8y0u:SN (3.59) BS01 rna ? GO:0000462 ... P05756 38698775
    910739 8y0u:SN (3.59) BS02 rna ? GO:0000462 ... P05756 38698775
    910740 8y0u:SO (3.59) BS01 rna ? GO:0000028 ... P39516 38698775
    910741 8y0u:SP (3.59) BS01 rna ? GO:0000028 ... Q01855 38698775
    910742 8y0u:SQ (3.59) BS01 rna ? GO:0000462 ... P0CX51 38698775
    910743 8y0u:SQ (3.59) BS02 MG ? GO:0000462 ... P0CX51 38698775
    910744 8y0u:ST (3.59) BS01 rna ? GO:0000028 ... P07280 38698775
    910745 8y0u:ST (3.59) BS02 MG ? GO:0000028 ... P07280 38698775
    910746 8y0u:ST (3.59) BS03 MG ? GO:0000028 ... P07280 38698775
    910747 8y0u:SU (3.59) BS01 rna ? GO:0000462 ... P38701 38698775
    910748 8y0u:SW (3.59) BS01 rna ? GO:0002181 ... P0C0W1 38698775
    910749 8y0u:SX (3.59) BS01 rna ? GO:0000462 ... P0CX29 38698775
    910750 8y0u:SY (3.59) BS01 rna ? GO:0000462 ... P0CX31 38698775
    910751 8y0u:SZ (3.59) BS01 rna ? GO:0002181 ... Q3E792 38698775
    910752 8y0u:Sa (3.59) BS01 rna ? GO:0000054 ... P39939 38698775
    910753 8y0u:Sb (3.59) BS01 rna ? GO:0000028 ... P35997 38698775
    910754 8y0u:Sc (3.59) BS01 rna ? GO:0000028 ... Q3E7X9 38698775
    910755 8y0u:Sd (3.59) BS01 rna ? GO:0002181 ... P41057 38698775
    910756 8y0u:Sd (3.59) BS02 MG ? GO:0002181 ... P41057 38698775
    910757 8y0u:Sd (3.59) BS03 ZN ? GO:0002181 ... P41057 38698775
    910758 8y0u:Se (3.59) BS01 rna ? GO:0002181 ... P0CX33 38698775
    910759 8y0u:Sf (3.59) BS01 rna ? GO:0000028 ... P05759 38698775
    910760 8y0u:Sf (3.59) BS02 ZN ? GO:0000028 ... P05759 38698775
    910761 8y0u:s (3.59) BS01 rna ? GO:0000723 ... P39015 38698775
    910762 8y0v:A (2.5) BS01 A1D5X N/A N/A Q9GZT9 39663371
    910763 8y0v:A (2.5) BS02 MN N/A N/A Q9GZT9 39663371
    910764 8y0w:5 (3.4) BS01 rna ? GO:0003723 ... P63241 38698775
    910765 8y0w:CB (3.4) BS01 rna 3.6.5.- GO:0002244 ... P13639 38698775
    910766 8y0w:CB (3.4) BS02 rna 3.6.5.- GO:0002244 ... P13639 38698775
    910767 8y0w:LA (3.4) BS01 rna ? GO:0002181 ... P62917 38698775
    910768 8y0w:LA (3.4) BS02 MG ? GO:0002181 ... P62917 38698775
    910769 8y0w:LB (3.4) BS01 rna ? GO:0002181 ... P39023 38698775
    910770 8y0w:LC (3.4) BS01 rna ? GO:0002181 ... P36578 38698775
    910771 8y0w:LC (3.4) BS02 rna ? GO:0002181 ... P36578 38698775
    910772 8y0w:LD (3.4) BS01 rna ? GO:0000027 ... P46777 38698775
    910773 8y0w:LD (3.4) BS02 rna ? GO:0000027 ... P46777 38698775
    910774 8y0w:LE (3.4) BS01 rna ? GO:0002181 ... Q02878 38698775
    910775 8y0w:LF (3.4) BS01 rna ? GO:0000463 ... P18124 38698775
    910776 8y0w:LF (3.4) BS02 rna ? GO:0000463 ... P18124 38698775
    910777 8y0w:LG (3.4) BS01 rna ? GO:0000470 ... P62424 38698775
    910778 8y0w:LG (3.4) BS02 rna ? GO:0000470 ... P62424 38698775
    910779 8y0w:LH (3.4) BS01 rna ? GO:0002181 ... P32969 38698775
    910780 8y0w:LI (3.4) BS01 rna ? GO:0000027 ... Q96L21 38698775
    910781 8y0w:LI (3.4) BS02 rna ? GO:0000027 ... Q96L21 38698775
    910782 8y0w:LJ (3.4) BS01 rna ? GO:0000027 ... P62913 38698775
    910783 8y0w:LJ (3.4) BS02 rna ? GO:0000027 ... P62913 38698775
    910784 8y0w:LL (3.4) BS01 rna ? GO:0001824 ... P26373 38698775
    910785 8y0w:LL (3.4) BS02 rna ? GO:0001824 ... P26373 38698775
    910786 8y0w:LM (3.4) BS01 rna ? GO:0002181 ... P50914 38698775
    910787 8y0w:LN (3.4) BS01 rna ? GO:0002181 ... P61313 38698775
    910788 8y0w:LN (3.4) BS02 rna ? GO:0002181 ... P61313 38698775
    910789 8y0w:LO (3.4) BS01 rna ? GO:0002181 ... P40429 38698775
    910790 8y0w:LP (3.4) BS01 rna ? GO:0002181 ... P18621 38698775
    910791 8y0w:LP (3.4) BS02 rna ? GO:0002181 ... P18621 38698775
    910792 8y0w:LQ (3.4) BS01 rna ? GO:0002181 ... Q07020 38698775
    910793 8y0w:LR (3.4) BS01 rna ? GO:0002181 ... P84098 38698775
    910794 8y0w:LR (3.4) BS02 rna ? GO:0002181 ... P84098 38698775
    910795 8y0w:LS (3.4) BS01 rna ? GO:0002181 ... Q02543 38698775
    910796 8y0w:LS (3.4) BS02 rna ? GO:0002181 ... Q02543 38698775
    910797 8y0w:LT (3.4) BS01 rna ? GO:0002181 ... P46778 38698775
    910798 8y0w:LT (3.4) BS02 rna ? GO:0002181 ... P46778 38698775
    910799 8y0w:LU (3.4) BS01 rna ? GO:0002181 ... P35268 38698775
    910800 8y0w:LV (3.4) BS01 rna ? GO:0000122 ... P62829 38698775

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).