SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    910801 8y0w:LW (3.4) BS01 rna ? GO:0000027 ... P83731 38698775
    910802 8y0w:LX (3.4) BS01 rna ? GO:0002181 ... P62750 38698775
    910803 8y0w:LX (3.4) BS02 rna ? GO:0002181 ... P62750 38698775
    910804 8y0w:LY (3.4) BS01 rna ? GO:0002181 ... P61254 38698775
    910805 8y0w:LY (3.4) BS02 rna ? GO:0002181 ... P61254 38698775
    910806 8y0w:LZ (3.4) BS01 rna ? GO:0002181 ... P61353 38698775
    910807 8y0w:La (3.4) BS01 rna ? GO:0002181 ... P46776 38698775
    910808 8y0w:Lb (3.4) BS01 rna ? GO:0002181 ... P47914 38698775
    910809 8y0w:Lc (3.4) BS01 rna ? GO:0002181 ... P62888 38698775
    910810 8y0w:Ld (3.4) BS01 rna ? GO:0002181 ... P62899 38698775
    910811 8y0w:Le (3.4) BS01 rna ? GO:0002181 ... P62910 38698775
    910812 8y0w:Le (3.4) BS02 MG ? GO:0002181 ... P62910 38698775
    910813 8y0w:Lf (3.4) BS01 rna ? GO:0000049 ... P18077 38698775
    910814 8y0w:Lg (3.4) BS01 rna ? GO:0002181 ... P49207 38698775
    910815 8y0w:Lg (3.4) BS02 MG ? GO:0002181 ... P49207 38698775
    910816 8y0w:Lg (3.4) BS03 ZN ? GO:0002181 ... P49207 38698775
    910817 8y0w:Lh (3.4) BS01 rna ? GO:0000463 ... P42766 38698775
    910818 8y0w:Lh (3.4) BS02 rna ? GO:0000463 ... P42766 38698775
    910819 8y0w:Li (3.4) BS01 rna ? GO:0002181 ... Q9Y3U8 38698775
    910820 8y0w:Lj (3.4) BS01 rna ? GO:0002181 ... P61927 38698775
    910821 8y0w:Lj (3.4) BS02 rna ? GO:0002181 ... P61927 38698775
    910822 8y0w:Lj (3.4) BS03 ZN ? GO:0002181 ... P61927 38698775
    910823 8y0w:Lk (3.4) BS01 rna ? GO:0001501 ... P63173 38698775
    910824 8y0w:Ll (3.4) BS01 rna ? GO:0002181 ... P62891 38698775
    910825 8y0w:Ll (3.4) BS02 rna ? GO:0002181 ... P62891 38698775
    910826 8y0w:Lm (3.4) BS01 rna ? GO:0002181 ... P62987 38698775
    910827 8y0w:Lm (3.4) BS02 ZN ? GO:0002181 ... P62987 38698775
    910828 8y0w:Lo (3.4) BS01 rna ? GO:0002181 ... P83881 38698775
    910829 8y0w:Lo (3.4) BS02 ZN ? GO:0002181 ... P83881 38698775
    910830 8y0w:Lp (3.4) BS01 rna ? GO:0002181 ... P61513 38698775
    910831 8y0w:Lp (3.4) BS02 ZN ? GO:0002181 ... P61513 38698775
    910832 8y0w:Lr (3.4) BS01 rna ? GO:0002181 ... P46779 38698775
    910833 8y0w:S (3.4) BS01 rna ? GO:0003723 ... Q8NC51 38698775
    910834 8y0w:SA (3.4) BS01 rna ? GO:0000028 ... P08865 38698775
    910835 8y0w:SB (3.4) BS01 rna ? GO:0002181 ... P61247 38698775
    910836 8y0w:SC (3.4) BS01 rna ? GO:0002181 ... P15880 38698775
    910837 8y0w:SD (3.4) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38698775
    910838 8y0w:SE (3.4) BS01 rna ? GO:0002181 ... P62701 38698775
    910839 8y0w:SF (3.4) BS01 rna ? GO:0000028 ... P46782 38698775
    910840 8y0w:SG (3.4) BS01 rna ? GO:0000082 ... P62753 38698775
    910841 8y0w:SH (3.4) BS01 rna ? GO:0001843 ... P62081 38698775
    910842 8y0w:SI (3.4) BS01 rna ? GO:0000462 ... P62241 38698775
    910843 8y0w:SI (3.4) BS02 rna ? GO:0000462 ... P62241 38698775
    910844 8y0w:SJ (3.4) BS01 rna ? GO:0002181 ... P46781 38698775
    910845 8y0w:SK (3.4) BS01 rna ? GO:0002181 ... P46783 38698775
    910846 8y0w:SL (3.4) BS01 rna ? GO:0002181 ... P62280 38698775
    910847 8y0w:SN (3.4) BS01 rna ? GO:0002181 ... P62277 38698775
    910848 8y0w:SO (3.4) BS01 rna ? GO:0000028 ... P62263 38698775
    910849 8y0w:SP (3.4) BS01 rna ? GO:0000028 ... P62841 38698775
    910850 8y0w:SQ (3.4) BS01 rna ? GO:0000462 ... P62249 38698775
    910851 8y0w:SR (3.4) BS01 rna ? GO:0002181 ... P08708 38698775
    910852 8y0w:SS (3.4) BS01 rna ? GO:0002181 ... P62269 38698775
    910853 8y0w:ST (3.4) BS01 rna ? GO:0000028 ... P39019 38698775
    910854 8y0w:SU (3.4) BS01 rna ? GO:0002181 ... P60866 38698775
    910855 8y0w:SW (3.4) BS01 rna ? GO:0002181 ... P62244 38698775
    910856 8y0w:SX (3.4) BS01 rna ? GO:0002181 ... P62266 38698775
    910857 8y0w:SY (3.4) BS01 rna ? GO:0002181 ... P62847 38698775
    910858 8y0w:SZ (3.4) BS01 rna ? GO:0002181 ... P62851 38698775
    910859 8y0w:Sa (3.4) BS01 rna ? GO:0002181 ... P62854 38698775
    910860 8y0w:Sb (3.4) BS01 rna ? GO:0000028 ... P42677 38698775
    910861 8y0w:Sc (3.4) BS01 rna ? GO:0000028 ... P62857 38698775
    910862 8y0w:Sd (3.4) BS01 rna ? GO:0002181 ... P62273 38698775
    910863 8y0w:Se (3.4) BS01 rna ? GO:0003735 ... P62861 38698775
    910864 8y0w:Sg (3.4) BS01 rna ? GO:0001891 ... P63244 38698775
    910865 8y0x:CB (3.3) BS01 rna 3.6.5.- GO:0002244 ... P13639 38698775
    910866 8y0x:CB (3.3) BS02 rna 3.6.5.- GO:0002244 ... P13639 38698775
    910867 8y0x:LA (3.3) BS01 rna ? GO:0002181 ... P62917 38698775
    910868 8y0x:LA (3.3) BS02 MG ? GO:0002181 ... P62917 38698775
    910869 8y0x:LB (3.3) BS01 rna ? GO:0002181 ... P39023 38698775
    910870 8y0x:LC (3.3) BS01 rna ? GO:0002181 ... P36578 38698775
    910871 8y0x:LC (3.3) BS02 rna ? GO:0002181 ... P36578 38698775
    910872 8y0x:LD (3.3) BS01 rna ? GO:0000027 ... P46777 38698775
    910873 8y0x:LD (3.3) BS02 rna ? GO:0000027 ... P46777 38698775
    910874 8y0x:LE (3.3) BS01 rna ? GO:0002181 ... Q02878 38698775
    910875 8y0x:LF (3.3) BS01 rna ? GO:0000463 ... P18124 38698775
    910876 8y0x:LF (3.3) BS02 rna ? GO:0000463 ... P18124 38698775
    910877 8y0x:LG (3.3) BS01 rna ? GO:0000470 ... P62424 38698775
    910878 8y0x:LG (3.3) BS02 rna ? GO:0000470 ... P62424 38698775
    910879 8y0x:LH (3.3) BS01 rna ? GO:0002181 ... P32969 38698775
    910880 8y0x:LI (3.3) BS01 rna ? GO:0000027 ... Q96L21 38698775
    910881 8y0x:LI (3.3) BS02 rna ? GO:0000027 ... Q96L21 38698775
    910882 8y0x:LJ (3.3) BS01 rna ? GO:0000027 ... P62913 38698775
    910883 8y0x:LJ (3.3) BS02 rna ? GO:0000027 ... P62913 38698775
    910884 8y0x:LL (3.3) BS01 rna ? GO:0001824 ... P26373 38698775
    910885 8y0x:LL (3.3) BS02 rna ? GO:0001824 ... P26373 38698775
    910886 8y0x:LM (3.3) BS01 rna ? GO:0002181 ... P50914 38698775
    910887 8y0x:LN (3.3) BS01 rna ? GO:0002181 ... P61313 38698775
    910888 8y0x:LN (3.3) BS02 rna ? GO:0002181 ... P61313 38698775
    910889 8y0x:LO (3.3) BS01 rna ? GO:0002181 ... P40429 38698775
    910890 8y0x:LP (3.3) BS01 rna ? GO:0002181 ... P18621 38698775
    910891 8y0x:LP (3.3) BS02 rna ? GO:0002181 ... P18621 38698775
    910892 8y0x:LQ (3.3) BS01 rna ? GO:0002181 ... Q07020 38698775
    910893 8y0x:LR (3.3) BS01 rna ? GO:0002181 ... P84098 38698775
    910894 8y0x:LR (3.3) BS02 rna ? GO:0002181 ... P84098 38698775
    910895 8y0x:LS (3.3) BS01 rna ? GO:0002181 ... Q02543 38698775
    910896 8y0x:LS (3.3) BS02 rna ? GO:0002181 ... Q02543 38698775
    910897 8y0x:LT (3.3) BS01 rna ? GO:0002181 ... P46778 38698775
    910898 8y0x:LT (3.3) BS02 rna ? GO:0002181 ... P46778 38698775
    910899 8y0x:LU (3.3) BS01 rna ? GO:0002181 ... P35268 38698775
    910900 8y0x:LV (3.3) BS01 rna ? GO:0000122 ... P62829 38698775
    910901 8y0x:LW (3.3) BS01 rna ? GO:0000027 ... P83731 38698775
    910902 8y0x:LX (3.3) BS01 rna ? GO:0002181 ... P62750 38698775
    910903 8y0x:LX (3.3) BS02 rna ? GO:0002181 ... P62750 38698775
    910904 8y0x:LY (3.3) BS01 rna ? GO:0002181 ... P61254 38698775
    910905 8y0x:LY (3.3) BS02 rna ? GO:0002181 ... P61254 38698775
    910906 8y0x:LZ (3.3) BS01 rna ? GO:0002181 ... P61353 38698775
    910907 8y0x:La (3.3) BS01 rna ? GO:0002181 ... P46776 38698775
    910908 8y0x:Lb (3.3) BS01 rna ? GO:0002181 ... P47914 38698775
    910909 8y0x:Lc (3.3) BS01 rna ? GO:0002181 ... P62888 38698775
    910910 8y0x:Ld (3.3) BS01 rna ? GO:0002181 ... P62899 38698775
    910911 8y0x:Le (3.3) BS01 rna ? GO:0002181 ... P62910 38698775
    910912 8y0x:Le (3.3) BS02 MG ? GO:0002181 ... P62910 38698775
    910913 8y0x:Lf (3.3) BS01 rna ? GO:0000049 ... P18077 38698775
    910914 8y0x:Lg (3.3) BS01 rna ? GO:0002181 ... P49207 38698775
    910915 8y0x:Lg (3.3) BS02 MG ? GO:0002181 ... P49207 38698775
    910916 8y0x:Lg (3.3) BS03 ZN ? GO:0002181 ... P49207 38698775
    910917 8y0x:Lh (3.3) BS01 rna ? GO:0000463 ... P42766 38698775
    910918 8y0x:Lh (3.3) BS02 rna ? GO:0000463 ... P42766 38698775
    910919 8y0x:Li (3.3) BS01 rna ? GO:0002181 ... Q9Y3U8 38698775
    910920 8y0x:Lj (3.3) BS01 rna ? GO:0002181 ... P61927 38698775
    910921 8y0x:Lj (3.3) BS02 rna ? GO:0002181 ... P61927 38698775
    910922 8y0x:Lj (3.3) BS03 ZN ? GO:0002181 ... P61927 38698775
    910923 8y0x:Lk (3.3) BS01 rna ? GO:0001501 ... P63173 38698775
    910924 8y0x:Ll (3.3) BS01 rna ? GO:0002181 ... P62891 38698775
    910925 8y0x:Ll (3.3) BS02 rna ? GO:0002181 ... P62891 38698775
    910926 8y0x:Lm (3.3) BS01 rna ? GO:0002181 ... P62987 38698775
    910927 8y0x:Lm (3.3) BS02 ZN ? GO:0002181 ... P62987 38698775
    910928 8y0x:Lo (3.3) BS01 rna ? GO:0002181 ... P83881 38698775
    910929 8y0x:Lo (3.3) BS02 rna ? GO:0002181 ... P83881 38698775
    910930 8y0x:Lp (3.3) BS01 rna ? GO:0002181 ... P61513 38698775
    910931 8y0x:Lp (3.3) BS02 ZN ? GO:0002181 ... P61513 38698775
    910932 8y0x:Lr (3.3) BS01 rna ? GO:0002181 ... P46779 38698775
    910933 8y0x:S (3.3) BS01 rna ? GO:0003723 ... Q8NC51 38698775
    910934 8y0x:SA (3.3) BS01 rna ? GO:0000028 ... P08865 38698775
    910935 8y0x:SB (3.3) BS01 rna ? GO:0002181 ... P61247 38698775
    910936 8y0x:SC (3.3) BS01 rna ? GO:0002181 ... P15880 38698775
    910937 8y0x:SD (3.3) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38698775
    910938 8y0x:SE (3.3) BS01 rna ? GO:0002181 ... P62701 38698775
    910939 8y0x:SF (3.3) BS01 rna ? GO:0000028 ... P46782 38698775
    910940 8y0x:SG (3.3) BS01 rna ? GO:0000082 ... P62753 38698775
    910941 8y0x:SH (3.3) BS01 rna ? GO:0001843 ... P62081 38698775
    910942 8y0x:SI (3.3) BS01 rna ? GO:0000462 ... P62241 38698775
    910943 8y0x:SI (3.3) BS02 rna ? GO:0000462 ... P62241 38698775
    910944 8y0x:SJ (3.3) BS01 rna ? GO:0002181 ... P46781 38698775
    910945 8y0x:SK (3.3) BS01 rna ? GO:0002181 ... P46783 38698775
    910946 8y0x:SL (3.3) BS01 rna ? GO:0002181 ... P62280 38698775
    910947 8y0x:SN (3.3) BS01 rna ? GO:0002181 ... P62277 38698775
    910948 8y0x:SO (3.3) BS01 rna ? GO:0000028 ... P62263 38698775
    910949 8y0x:SP (3.3) BS01 rna ? GO:0000028 ... P62841 38698775
    910950 8y0x:SQ (3.3) BS01 rna ? GO:0000462 ... P62249 38698775
    910951 8y0x:SR (3.3) BS01 rna ? GO:0002181 ... P08708 38698775
    910952 8y0x:SS (3.3) BS01 rna ? GO:0002181 ... P62269 38698775
    910953 8y0x:ST (3.3) BS01 rna ? GO:0000028 ... P39019 38698775
    910954 8y0x:SU (3.3) BS01 rna ? GO:0002181 ... P60866 38698775
    910955 8y0x:SW (3.3) BS01 rna ? GO:0002181 ... P62244 38698775
    910956 8y0x:SX (3.3) BS01 rna ? GO:0002181 ... P62266 38698775
    910957 8y0x:SY (3.3) BS01 rna ? GO:0002181 ... P62847 38698775
    910958 8y0x:SZ (3.3) BS01 rna ? GO:0002181 ... P62851 38698775
    910959 8y0x:Sa (3.3) BS01 rna ? GO:0002181 ... P62854 38698775
    910960 8y0x:Sa (3.3) BS02 ZN ? GO:0002181 ... P62854 38698775
    910961 8y0x:Sb (3.3) BS01 rna ? GO:0000028 ... P42677 38698775
    910962 8y0x:Sc (3.3) BS01 rna ? GO:0000028 ... P62857 38698775
    910963 8y0x:Sd (3.3) BS01 rna ? GO:0002181 ... P62273 38698775
    910964 8y0x:Se (3.3) BS01 rna ? GO:0003735 ... P62861 38698775
    910965 8y0x:Sg (3.3) BS01 rna ? GO:0001891 ... P63244 38698775
    910966 8y11:A (1.77) BS01 NAD N/A GO:0000166 ... A0AAE4G800 38918500
    910967 8y11:B (1.77) BS01 NAD N/A GO:0000166 ... A0AAE4G800 38918500
    910968 8y11:D (1.77) BS01 NAD N/A GO:0000166 ... A0AAE4G800 38918500
    910969 8y12:A (2.1) BS01 NAP N/A N/A A0A179FZ20 N/A
    910970 8y12:A (2.1) BS02 NAP N/A N/A A0A179FZ20 N/A
    910971 8y12:B (2.1) BS01 NAP N/A N/A A0A179FZ20 N/A
    910972 8y12:B (2.1) BS02 NAP N/A N/A A0A179FZ20 N/A
    910973 8y15:A (2.17) BS01 CHL N/A N/A P12333 39346626
    910974 8y15:A (2.17) BS02 CLA N/A N/A P12333 39346626
    910975 8y15:A (2.17) BS03 CLA N/A N/A P12333 39346626
    910976 8y15:A (2.17) BS04 CLA N/A N/A P12333 39346626
    910977 8y15:A (2.17) BS05 CHL N/A N/A P12333 39346626
    910978 8y15:A (2.17) BS06 CHL N/A N/A P12333 39346626
    910979 8y15:A (2.17) BS07 CHL N/A N/A P12333 39346626
    910980 8y15:A (2.17) BS08 CHL N/A N/A P12333 39346626
    910981 8y15:A (2.17) BS09 CHL N/A N/A P12333 39346626
    910982 8y15:A (2.17) BS10 CLA N/A N/A P12333 39346626
    910983 8y15:A (2.17) BS11 CLA N/A N/A P12333 39346626
    910984 8y15:A (2.17) BS12 CLA N/A N/A P12333 39346626
    910985 8y15:A (2.17) BS13 CLA N/A N/A P12333 39346626
    910986 8y15:A (2.17) BS14 CLA N/A N/A P12333 39346626
    910987 8y15:A (2.17) BS15 A1LXP N/A N/A P12333 39346626
    910988 8y15:A (2.17) BS16 A1LXP N/A N/A P12333 39346626
    910989 8y15:A (2.17) BS17 CHL N/A N/A P12333 39346626
    910990 8y15:B (2.17) BS01 CHL N/A N/A P12333 39346626
    910991 8y15:B (2.17) BS02 CHL N/A N/A P12333 39346626
    910992 8y15:B (2.17) BS03 CLA N/A N/A P12333 39346626
    910993 8y15:B (2.17) BS04 CLA N/A N/A P12333 39346626
    910994 8y15:B (2.17) BS05 CLA N/A N/A P12333 39346626
    910995 8y15:B (2.17) BS06 CHL N/A N/A P12333 39346626
    910996 8y15:B (2.17) BS07 CHL N/A N/A P12333 39346626
    910997 8y15:B (2.17) BS08 CHL N/A N/A P12333 39346626
    910998 8y15:B (2.17) BS09 CHL N/A N/A P12333 39346626
    910999 8y15:B (2.17) BS10 CHL N/A N/A P12333 39346626
    911000 8y15:B (2.17) BS11 CLA N/A N/A P12333 39346626

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).