SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    911001 8y15:B (2.17) BS12 CLA N/A N/A P12333 39346626
    911002 8y15:B (2.17) BS13 CLA N/A N/A P12333 39346626
    911003 8y15:B (2.17) BS14 CLA N/A N/A P12333 39346626
    911004 8y15:B (2.17) BS15 CLA N/A N/A P12333 39346626
    911005 8y15:B (2.17) BS16 A1LXP N/A N/A P12333 39346626
    911006 8y15:B (2.17) BS17 A1LXP N/A N/A P12333 39346626
    911007 8y15:C (2.17) BS01 CHL N/A N/A P12333 39346626
    911008 8y15:C (2.17) BS02 CHL N/A N/A P12333 39346626
    911009 8y15:C (2.17) BS03 CLA N/A N/A P12333 39346626
    911010 8y15:C (2.17) BS04 CLA N/A N/A P12333 39346626
    911011 8y15:C (2.17) BS05 CLA N/A N/A P12333 39346626
    911012 8y15:C (2.17) BS06 CHL N/A N/A P12333 39346626
    911013 8y15:C (2.17) BS07 CHL N/A N/A P12333 39346626
    911014 8y15:C (2.17) BS08 CHL N/A N/A P12333 39346626
    911015 8y15:C (2.17) BS09 CHL N/A N/A P12333 39346626
    911016 8y15:C (2.17) BS10 CHL N/A N/A P12333 39346626
    911017 8y15:C (2.17) BS11 CLA N/A N/A P12333 39346626
    911018 8y15:C (2.17) BS12 CLA N/A N/A P12333 39346626
    911019 8y15:C (2.17) BS13 CLA N/A N/A P12333 39346626
    911020 8y15:C (2.17) BS14 CLA N/A N/A P12333 39346626
    911021 8y15:C (2.17) BS15 CLA N/A N/A P12333 39346626
    911022 8y15:C (2.17) BS16 A1LXP N/A N/A P12333 39346626
    911023 8y15:C (2.17) BS17 A1LXP N/A N/A P12333 39346626
    911024 8y16:A (2.98) BS01 ZN N/A GO:0006508 ... Q9BYF1 39013463
    911025 8y16:E (2.98) BS01 ZN N/A GO:0006508 ... Q9BYF1 39013463
    911026 8y16:F (2.98) BS01 ZN N/A GO:0006508 ... Q9BYF1 39013463
    911027 8y17:A (2.8) BS01 MN N/A N/A A0A1E5TT85 N/A
    911028 8y17:B (2.8) BS01 MN N/A N/A A0A1E5TT85 N/A
    911029 8y17:C (2.8) BS01 MN N/A N/A A0A1E5TT85 N/A
    911030 8y17:D (2.8) BS01 MN N/A N/A A0A1E5TT85 N/A
    911031 8y18:A (3.04) BS01 ZN N/A GO:0006508 ... Q9BYF1 39013463
    911032 8y1j:A (2.3) BS01 2KT 4.3.1.19 GO:0004794 ... Q9I6G0 38417345
    911033 8y1j:A (2.3) BS02 2KT 4.3.1.19 GO:0004794 ... Q9I6G0 38417345
    911034 8y1j:B (2.3) BS01 2KT 4.3.1.19 GO:0004794 ... Q9I6G0 38417345
    911035 8y1k:A (3.1) BS01 dna N/A N/A N/A 39820821
    911036 8y1k:A (3.1) BS02 ANP N/A N/A N/A 39820821
    911037 8y1k:B (3.1) BS01 dna N/A N/A N/A 39820821
    911038 8y1k:B (3.1) BS02 ANP N/A N/A N/A 39820821
    911039 8y1k:E (3.1) BS01 dna N/A N/A N/A 39820821
    911040 8y1k:F (3.1) BS01 dna N/A N/A N/A 39820821
    911041 8y1k:F (3.1) BS02 ANP N/A N/A N/A 39820821
    911042 8y1m:A (1.8) BS01 XYP 3.2.1.8 GO:0004553 ... P07528 38565938
    911043 8y1m:A (1.8) BS02 XYP 3.2.1.8 GO:0004553 ... P07528 38565938
    911044 8y1m:A (1.8) BS03 XYP 3.2.1.8 GO:0004553 ... P07528 38565938
    911045 8y1m:A (1.8) BS04 XYP 3.2.1.8 GO:0004553 ... P07528 38565938
    911046 8y1m:A (1.8) BS05 CA 3.2.1.8 GO:0004553 ... P07528 38565938
    911047 8y1m:A (1.8) BS06 CA 3.2.1.8 GO:0004553 ... P07528 38565938
    911048 8y1m:A (1.8) BS07 CA 3.2.1.8 GO:0004553 ... P07528 38565938
    911049 8y1m:A (1.8) BS08 CA 3.2.1.8 GO:0004553 ... P07528 38565938
    911050 8y1m:A (1.8) BS09 CA 3.2.1.8 GO:0004553 ... P07528 38565938
    911051 8y1m:B (1.8) BS01 XYP 3.2.1.8 GO:0004553 ... P07528 38565938
    911052 8y1m:B (1.8) BS02 XYP 3.2.1.8 GO:0004553 ... P07528 38565938
    911053 8y1m:B (1.8) BS03 XYP 3.2.1.8 GO:0004553 ... P07528 38565938
    911054 8y1m:B (1.8) BS04 XYP 3.2.1.8 GO:0004553 ... P07528 38565938
    911055 8y1m:B (1.8) BS05 CA 3.2.1.8 GO:0004553 ... P07528 38565938
    911056 8y1m:B (1.8) BS06 CA 3.2.1.8 GO:0004553 ... P07528 38565938
    911057 8y1m:B (1.8) BS07 CA 3.2.1.8 GO:0004553 ... P07528 38565938
    911058 8y1m:B (1.8) BS08 CA 3.2.1.8 GO:0004553 ... P07528 38565938
    911059 8y1m:B (1.8) BS09 CA 3.2.1.8 GO:0004553 ... P07528 38565938
    911060 8y1p:A (3.45) BS01 17F N/A N/A Q8IZY2 N/A
    911061 8y1p:A (3.45) BS02 17F N/A N/A Q8IZY2 N/A
    911062 8y1q:A (2.42) BS01 DU N/A GO:0000287 ... O66592 39440877
    911063 8y1q:B (2.42) BS01 DU N/A GO:0000287 ... O66592 39440877
    911064 8y1q:C (2.42) BS01 DU N/A GO:0000287 ... O66592 39440877
    911065 8y1t:A (2.4) BS01 G3P N/A N/A D3KVM3 N/A
    911066 8y1t:A (2.4) BS02 ADP N/A N/A D3KVM3 N/A
    911067 8y1t:B (2.4) BS01 ADP N/A N/A D3KVM3 N/A
    911068 8y1u:A (2.41) BS01 peptide N/A GO:0005515 ... Q9H672 39039081
    911069 8y1w:A (1.36) BS01 UMP N/A GO:0000166 ... K7PBY4 39440877
    911070 8y1x:A (3.68) BS01 ASP N/A N/A Q8L3K8 N/A
    911071 8y1x:B (3.68) BS01 ASP N/A N/A Q8L3K8 N/A
    911072 8y1y:A (2.01) BS01 peptide N/A N/A N/A 39901037
    911073 8y1z:A (1.914) BS01 peptide N/A N/A N/A 39901037
    911074 8y20:A (2.23) BS01 GLC N/A N/A N/A 39901037
    911075 8y20:A (2.23) BS02 GLC N/A N/A N/A 39901037
    911076 8y20:A (2.23) BS03 A1LXV N/A N/A N/A 39901037
    911077 8y22:A (2.792) BS01 A1LW9 N/A GO:0004672 ... P11362 38870833
    911078 8y22:B (2.792) BS01 A1LW9 N/A GO:0004672 ... P11362 38870833
    911079 8y23:A (1.48) BS01 6FX N/A N/A P22629 N/A
    911080 8y23:B (1.48) BS01 6FX N/A N/A P22629 N/A
    911081 8y23:C (1.48) BS01 6FX N/A N/A P22629 N/A
    911082 8y23:D (1.48) BS01 6FX N/A N/A P22629 N/A
    911083 8y26:B (1.23) BS01 A1LXQ N/A N/A P22629 N/A
    911084 8y26:D (1.23) BS01 A1LXQ N/A N/A P22629 N/A
    911085 8y27:B (1.45) BS01 A1LXQ N/A N/A P22629 N/A
    911086 8y27:C (1.45) BS01 A1LXQ N/A N/A P22629 N/A
    911087 8y27:D (1.45) BS01 A1LXQ N/A N/A P22629 N/A
    911088 8y29:A (1.42) BS01 MT6 N/A N/A P22629 N/A
    911089 8y29:B (1.42) BS01 MT6 N/A N/A P22629 N/A
    911090 8y29:C (1.42) BS01 MT6 N/A N/A P22629 N/A
    911091 8y29:D (1.42) BS01 MT6 N/A N/A P22629 N/A
    911092 8y2a:A (1.34) BS01 MT6 N/A N/A P22629 N/A
    911093 8y2a:B (1.34) BS01 MT6 N/A N/A P22629 N/A
    911094 8y2a:C (1.34) BS01 MT6 N/A N/A P22629 N/A
    911095 8y2a:D (1.34) BS01 MT6 N/A N/A P22629 N/A
    911096 8y2b:A (1.5) BS01 MT6 N/A N/A P22629 N/A
    911097 8y2b:C (1.5) BS01 MT6 N/A N/A P22629 N/A
    911098 8y2d:A (2.8) BS01 LDP N/A GO:0016020 ... Q01959 39112701
    911099 8y2e:A (3.03) BS01 CXQ N/A GO:0001504 ... Q01959 39112701
    911100 8y2f:A (2.97) BS01 A1D5S N/A GO:0001504 ... Q01959 39112701
    911101 8y2g:A (2.83) BS01 A1D5U N/A GO:0001504 ... Q01959 39112701
    911102 8y2h:B (3.3) BS01 peptide 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54887 38740943
    911103 8y2h:B (3.3) BS02 peptide 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54887 38740943
    911104 8y2h:B (3.3) BS03 ATP 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54887 38740943
    911105 8y2h:F (3.3) BS01 peptide 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54887 38740943
    911106 8y2h:F (3.3) BS02 peptide 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54887 38740943
    911107 8y2h:F (3.3) BS03 ATP 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54887 38740943
    911108 8y2h:G (3.3) BS01 peptide 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54887 38740943
    911109 8y2h:G (3.3) BS02 peptide 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54887 38740943
    911110 8y2h:G (3.3) BS03 ATP 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54887 38740943
    911111 8y2h:H (3.3) BS01 peptide 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54887 38740943
    911112 8y2h:H (3.3) BS02 peptide 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54887 38740943
    911113 8y2h:H (3.3) BS03 ATP 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54887 38740943
    911114 8y2i:A (2.92) BS01 dna N/A N/A N/A 39737904
    911115 8y2i:A (2.92) BS02 dna N/A N/A N/A 39737904
    911116 8y2i:A (2.92) BS03 rna N/A N/A N/A 39737904
    911117 8y2l:A (3.95) BS01 MN N/A N/A P18177 N/A
    911118 8y2l:A (3.95) BS02 UDP N/A N/A P18177 N/A
    911119 8y2l:B (3.95) BS01 MN N/A N/A P18177 N/A
    911120 8y2l:B (3.95) BS02 UDP N/A N/A P18177 N/A
    911121 8y2l:C (3.95) BS01 MN N/A N/A P18177 N/A
    911122 8y2l:C (3.95) BS02 UDP N/A N/A P18177 N/A
    911123 8y2m:A (3.07) BS01 A1D5V N/A GO:0005515 ... P28496 38964337
    911124 8y2m:A (3.07) BS02 7PO N/A GO:0005515 ... P28496 38964337
    911125 8y2m:C (3.07) BS01 A1D5V N/A GO:0005515 ... P28496 38964337
    911126 8y2m:C (3.07) BS02 7PO N/A GO:0005515 ... P28496 38964337
    911127 8y2s:A (2.0) BS01 A1LXW 1.14.13.2 GO:0004497 ... P20586 N/A
    911128 8y2s:A (2.0) BS02 FAD 1.14.13.2 GO:0004497 ... P20586 N/A
    911129 8y30:A (2.8) BS01 MG N/A N/A A0A0D6HJB1 N/A
    911130 8y30:A (2.8) BS02 MG N/A N/A A0A0D6HJB1 N/A
    911131 8y30:B (2.8) BS01 MG N/A N/A A0A0D6HJB1 N/A
    911132 8y30:B (2.8) BS02 MG N/A N/A A0A0D6HJB1 N/A
    911133 8y30:C (2.8) BS01 MG N/A N/A A0A0D6HJB1 N/A
    911134 8y30:C (2.8) BS02 MG N/A N/A A0A0D6HJB1 N/A
    911135 8y33:A (2.9) BS01 V8U N/A GO:0015979 ... N/A 38552148
    911136 8y36:1 (2.65) BS01 rna N/A GO:0003735 ... Q2FYU6 38992047
    911137 8y36:2 (2.65) BS01 rna N/A GO:0003735 ... Q2FUQ0 38992047
    911138 8y36:3 (2.65) BS01 rna N/A GO:0003735 ... Q2FXQ0 38992047
    911139 8y36:4 (2.65) BS01 rna N/A GO:0003735 ... Q2FW29 38992047
    911140 8y36:C (2.65) BS01 rna N/A GO:0002181 ... P60433 38992047
    911141 8y36:D (2.65) BS01 rna N/A GO:0003735 ... Q2FW06 38992047
    911142 8y36:E (2.65) BS01 rna N/A GO:0003735 ... Q2FW07 38992047
    911143 8y36:F (2.65) BS01 rna N/A GO:0000049 ... Q2FW18 38992047
    911144 8y36:F (2.65) BS02 rna N/A GO:0000049 ... Q2FW18 38992047
    911145 8y36:G (2.65) BS01 rna N/A GO:0002181 ... Q2FW21 38992047
    911146 8y36:H (2.65) BS01 rna N/A GO:0003729 ... Q2FW38 38992047
    911147 8y36:I (2.65) BS01 rna N/A GO:0003735 ... Q2FW16 38992047
    911148 8y36:J (2.65) BS01 rna N/A GO:0003735 ... P0A0F8 38992047
    911149 8y36:K (2.65) BS01 rna N/A GO:0000049 ... Q2FW13 38992047
    911150 8y36:K (2.65) BS02 rna N/A GO:0000049 ... Q2FW13 38992047
    911151 8y36:L (2.65) BS01 rna N/A GO:0003735 ... Q2FW33 38992047
    911152 8y36:M (2.65) BS01 rna N/A GO:0003735 ... Q2FW22 38992047
    911153 8y36:M (2.65) BS02 rna N/A GO:0003735 ... Q2FW22 38992047
    911154 8y36:N (2.65) BS01 rna N/A GO:0003735 ... Q2FZ42 38992047
    911155 8y36:O (2.65) BS01 rna N/A GO:0000027 ... Q2FXQ1 38992047
    911156 8y36:P (2.65) BS01 rna N/A GO:0003723 ... Q2FXS8 38992047
    911157 8y36:Q (2.65) BS01 rna N/A GO:0003735 ... Q2FW11 38992047
    911158 8y36:R (2.65) BS01 rna N/A GO:0003735 ... Q2FW08 38992047
    911159 8y36:S (2.65) BS01 rna N/A GO:0003723 ... Q2FW17 38992047
    911160 8y36:T (2.65) BS01 rna N/A GO:0003735 ... Q2G0S0 38992047
    911161 8y36:U (2.65) BS01 rna N/A GO:0003735 ... Q2FXT0 38992047
    911162 8y36:U (2.65) BS02 rna N/A GO:0003735 ... Q2FXT0 38992047
    911163 8y36:V (2.65) BS01 rna N/A GO:0003735 ... Q2FZ60 38992047
    911164 8y36:W (2.65) BS01 rna N/A GO:0003735 ... Q2FW14 38992047
    911165 8y36:X (2.65) BS01 rna N/A GO:0003735 ... P0A0G2 38992047
    911166 8y36:X (2.65) BS02 rna N/A GO:0003735 ... P0A0G2 38992047
    911167 8y36:Y (2.65) BS01 rna N/A GO:0003735 ... Q2FWD8 38992047
    911168 8y36:Z (2.65) BS01 rna N/A GO:0003735 ... A0A0D1H2J5 38992047
    911169 8y37:1 (2.53) BS01 rna N/A GO:0003735 ... Q2FYU6 38992047
    911170 8y37:2 (2.53) BS01 rna N/A GO:0003735 ... Q2FUQ0 38992047
    911171 8y37:3 (2.53) BS01 rna N/A GO:0003735 ... Q2FXQ0 38992047
    911172 8y37:4 (2.53) BS01 rna N/A GO:0003735 ... Q2FW29 38992047
    911173 8y37:C (2.53) BS01 rna N/A GO:0002181 ... P60430 38992047
    911174 8y37:D (2.53) BS01 rna N/A GO:0003735 ... Q2FW06 38992047
    911175 8y37:E (2.53) BS01 rna N/A GO:0003735 ... Q2FW07 38992047
    911176 8y37:F (2.53) BS01 rna N/A GO:0000049 ... Q2FW18 38992047
    911177 8y37:F (2.53) BS02 rna N/A GO:0000049 ... Q2FW18 38992047
    911178 8y37:G (2.53) BS01 rna N/A GO:0002181 ... Q2FW21 38992047
    911179 8y37:H (2.53) BS01 rna N/A GO:0003729 ... Q2FW38 38992047
    911180 8y37:I (2.53) BS01 rna N/A GO:0003735 ... Q2FW16 38992047
    911181 8y37:J (2.53) BS01 rna N/A GO:0003735 ... P0A0F8 38992047
    911182 8y37:K (2.53) BS01 rna N/A GO:0000049 ... Q2FW13 38992047
    911183 8y37:K (2.53) BS02 rna N/A GO:0000049 ... Q2FW13 38992047
    911184 8y37:L (2.53) BS01 rna N/A GO:0003735 ... Q2FW33 38992047
    911185 8y37:M (2.53) BS01 rna N/A GO:0003735 ... Q2FW22 38992047
    911186 8y37:M (2.53) BS02 rna N/A GO:0003735 ... Q2FW22 38992047
    911187 8y37:N (2.53) BS01 rna N/A GO:0003735 ... Q2FZ42 38992047
    911188 8y37:O (2.53) BS01 rna N/A GO:0000027 ... Q2FXQ1 38992047
    911189 8y37:P (2.53) BS01 rna N/A GO:0003723 ... Q2FXS8 38992047
    911190 8y37:Q (2.53) BS01 rna N/A GO:0003735 ... Q2FW11 38992047
    911191 8y37:R (2.53) BS01 rna N/A GO:0003735 ... Q2FW08 38992047
    911192 8y37:S (2.53) BS01 rna N/A GO:0003723 ... Q2FW17 38992047
    911193 8y37:T (2.53) BS01 rna N/A GO:0003735 ... Q2G0S0 38992047
    911194 8y37:U (2.53) BS01 rna N/A GO:0003735 ... Q2FXT0 38992047
    911195 8y37:U (2.53) BS02 rna N/A GO:0003735 ... Q2FXT0 38992047
    911196 8y37:V (2.53) BS01 rna N/A GO:0003735 ... Q2FZ60 38992047
    911197 8y37:W (2.53) BS01 rna N/A GO:0003735 ... Q2FW14 38992047
    911198 8y37:X (2.53) BS01 rna N/A GO:0003735 ... P0A0G2 38992047
    911199 8y37:X (2.53) BS02 rna N/A GO:0003735 ... P0A0G2 38992047
    911200 8y37:Y (2.53) BS01 rna N/A GO:0003735 ... Q2FWD8 38992047

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).