SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    911601 8y6f:K (2.01) BS02 FE N/A GO:0006826 ... P02794 38604418
    911602 8y6f:L (2.01) BS01 FE N/A GO:0006826 ... P02794 38604418
    911603 8y6f:L (2.01) BS02 FE N/A GO:0006826 ... P02794 38604418
    911604 8y6h:A (2.49) BS01 R0Z 7.6.2.1
    7.6.2.2
    GO:0000086 ... P08183 38579618
    911605 8y6h:A (2.49) BS02 R0Z 7.6.2.1
    7.6.2.2
    GO:0000086 ... P08183 38579618
    911606 8y6h:A (2.49) BS03 R0Z 7.6.2.1
    7.6.2.2
    GO:0000086 ... P08183 38579618
    911607 8y6i:A (2.54) BS01 CLR 7.6.2.1
    7.6.2.2
    GO:0000086 ... P08183 38579618
    911608 8y6i:A (2.54) BS02 CLR 7.6.2.1
    7.6.2.2
    GO:0000086 ... P08183 38579618
    911609 8y6i:A (2.54) BS03 CLR 7.6.2.1
    7.6.2.2
    GO:0000086 ... P08183 38579618
    911610 8y6i:A (2.54) BS04 CLR 7.6.2.1
    7.6.2.2
    GO:0000086 ... P08183 38579618
    911611 8y6i:A (2.54) BS05 CLR 7.6.2.1
    7.6.2.2
    GO:0000086 ... P08183 38579618
    911612 8y6i:A (2.54) BS06 CLR 7.6.2.1
    7.6.2.2
    GO:0000086 ... P08183 38579618
    911613 8y6i:A (2.54) BS07 CLR 7.6.2.1
    7.6.2.2
    GO:0000086 ... P08183 38579618
    911614 8y6i:A (2.54) BS08 R0Z 7.6.2.1
    7.6.2.2
    GO:0000086 ... P08183 38579618
    911615 8y6i:A (2.54) BS09 R0Z 7.6.2.1
    7.6.2.2
    GO:0000086 ... P08183 38579618
    911616 8y6i:A (2.54) BS10 R0Z 7.6.2.1
    7.6.2.2
    GO:0000086 ... P08183 38579618
    911617 8y6k:A (3.94) BS01 ZN N/A GO:0003779 ... Q8TDZ2 39122694
    911618 8y6k:A (3.94) BS02 ZN N/A GO:0003779 ... Q8TDZ2 39122694
    911619 8y6k:A (3.94) BS03 FAD N/A GO:0003779 ... Q8TDZ2 39122694
    911620 8y6o:C (3.38) BS01 rna ? GO:0000244 ... Q6P2Q9 38484052
    911621 8y6o:C (3.38) BS02 rna ? GO:0000244 ... Q6P2Q9 38484052
    911622 8y6o:C (3.38) BS03 IHP ? GO:0000244 ... Q6P2Q9 38484052
    911623 8y6o:D (3.38) BS01 GTP ? GO:0000398 ... Q15029 38484052
    911624 8y6o:F (3.38) BS01 rna ? GO:0000375 ... Q96DI7 38484052
    911625 8y6o:G (3.38) BS01 rna ? GO:0000244 ... O94906 38484052
    911626 8y6o:G (3.38) BS02 rna ? GO:0000244 ... O94906 38484052
    911627 8y6o:I (3.38) BS01 rna 3.6.4.13 GO:0000354 ... Q9BUQ8 38484052
    911628 8y6o:I (3.38) BS02 rna 3.6.4.13 GO:0000354 ... Q9BUQ8 38484052
    911629 8y6o:L (3.38) BS01 rna ? GO:0000244 ... Q8WWY3 38484052
    911630 8y6o:L (3.38) BS02 rna ? GO:0000244 ... Q8WWY3 38484052
    911631 8y6o:N (3.38) BS01 rna ? GO:0000244 ... O43395 38484052
    911632 8y6o:N (3.38) BS02 rna ? GO:0000244 ... O43395 38484052
    911633 8y6o:O (3.38) BS01 rna ? GO:0000398 ... P55769 38484052
    911634 8y6o:R (3.38) BS01 rna ? GO:0000398 ... Q86UT8 38484052
    911635 8y6o:R (3.38) BS02 rna ? GO:0000398 ... Q86UT8 38484052
    911636 8y6o:R (3.38) BS03 ZN ? GO:0000398 ... Q86UT8 38484052
    911637 8y6o:R (3.38) BS04 ZN ? GO:0000398 ... Q86UT8 38484052
    911638 8y6o:U (3.38) BS01 ZN 3.4.19.12 GO:0000245 ... Q53GS9 38484052
    911639 8y6o:V (3.38) BS01 ZN ? GO:0005515 ... Q9UDW3 38484052
    911640 8y6o:V (3.38) BS02 ZN ? GO:0005515 ... Q9UDW3 38484052
    911641 8y6o:W (3.38) BS01 rna ? GO:0000398 ... Q16560 38484052
    911642 8y6o:W (3.38) BS02 rna ? GO:0000398 ... Q16560 38484052
    911643 8y6o:X (3.38) BS01 rna ? GO:0000398 ... Q9BV90 38484052
    911644 8y6o:X (3.38) BS02 rna ? GO:0000398 ... Q9BV90 38484052
    911645 8y6o:Y (3.38) BS01 rna ? GO:0005515 ... Q6IEG0 38484052
    911646 8y6o:Y (3.38) BS02 rna ? GO:0005515 ... Q6IEG0 38484052
    911647 8y6o:Y (3.38) BS03 ZN ? GO:0005515 ... Q6IEG0 38484052
    911648 8y6o:Z (3.38) BS01 rna ? GO:0005634 ... Q8N8D1 38484052
    911649 8y6o:a (3.38) BS01 rna ? GO:0000387 ... P14678 38484052
    911650 8y6o:b (3.38) BS01 rna ? GO:0000243 ... P62314 38484052
    911651 8y6o:c (3.38) BS01 rna ? GO:0000245 ... P62316 38484052
    911652 8y6o:d (3.38) BS01 rna ? GO:0000243 ... P62318 38484052
    911653 8y6o:e (3.38) BS01 rna ? GO:0000245 ... P62304 38484052
    911654 8y6o:f (3.38) BS01 rna ? GO:0000387 ... P62306 38484052
    911655 8y6o:g (3.38) BS01 rna ? GO:0000245 ... P62308 38484052
    911656 8y6o:h (3.38) BS01 rna ? GO:0000387 ... P14678 38484052
    911657 8y6o:i (3.38) BS01 rna ? GO:0000243 ... P62314 38484052
    911658 8y6o:j (3.38) BS01 rna ? GO:0000245 ... P62316 38484052
    911659 8y6o:k (3.38) BS01 rna ? GO:0000243 ... P62318 38484052
    911660 8y6o:l (3.38) BS01 rna ? GO:0000245 ... P62304 38484052
    911661 8y6o:m (3.38) BS01 rna ? GO:0000387 ... P62306 38484052
    911662 8y6o:n (3.38) BS01 rna ? GO:0000245 ... P62308 38484052
    911663 8y6o:o (3.38) BS01 rna ? GO:0000387 ... P14678 38484052
    911664 8y6o:p (3.38) BS01 rna ? GO:0000243 ... P62314 38484052
    911665 8y6o:q (3.38) BS01 rna ? GO:0000245 ... P62316 38484052
    911666 8y6o:r (3.38) BS01 rna ? GO:0000243 ... P62318 38484052
    911667 8y6o:s (3.38) BS01 rna ? GO:0000245 ... P62304 38484052
    911668 8y6o:t (3.38) BS01 rna ? GO:0000387 ... P62306 38484052
    911669 8y6o:u (3.38) BS01 rna ? GO:0000245 ... P62308 38484052
    911670 8y6u:C (3.97) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38039839
    911671 8y6u:C (3.97) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 38039839
    911672 8y6u:D (3.97) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38039839
    911673 8y6u:D (3.97) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 38039839
    911674 8y6u:F (3.97) BS01 dna ? GO:0000345 ... P00579 38039839
    911675 8y6u:F (3.97) BS02 dna ? GO:0000345 ... P00579 38039839
    911676 8y6u:H (3.97) BS01 dna ? GO:0003677 ... P0A9F6 38039839
    911677 8y6u:H (3.97) BS02 dna ? GO:0003677 ... P0A9F6 38039839
    911678 8y6u:I (3.97) BS01 dna 2.7.7.6 GO:0000345 ... P0A7Z4 38039839
    911679 8y6u:I (3.97) BS02 dna 2.7.7.6 GO:0000345 ... P0A7Z4 38039839
    911680 8y6u:J (3.97) BS01 dna ? GO:0003677 ... P0A9F6 38039839
    911681 8y6u:J (3.97) BS02 dna ? GO:0003677 ... P0A9F6 38039839
    911682 8y6x:A (3.4) BS01 A1LXU N/A N/A Q95460 39432319
    911683 8y74:A (1.9) BS01 peptide N/A N/A O46789 38768812
    911684 8y74:D (1.9) BS01 peptide N/A N/A O46789 38768812
    911685 8y7e:1 (4.66) BS01 rna ? GO:0000245 ... O75533 38484052
    911686 8y7e:1 (4.66) BS02 rna ? GO:0000245 ... O75533 38484052
    911687 8y7e:2 (4.66) BS01 rna ? GO:0000398 ... Q13435 38484052
    911688 8y7e:6 (4.66) BS01 rna ? GO:0000398 ... Q7RTV0 38484052
    911689 8y7e:6 (4.66) BS02 rna ? GO:0000398 ... Q7RTV0 38484052
    911690 8y7e:6 (4.66) BS03 ZN ? GO:0000398 ... Q7RTV0 38484052
    911691 8y7e:6 (4.66) BS04 ZN ? GO:0000398 ... Q7RTV0 38484052
    911692 8y7e:6 (4.66) BS05 ZN ? GO:0000398 ... Q7RTV0 38484052
    911693 8y7e:h (4.66) BS01 rna ? GO:0000243 ... P62318 38484052
    911694 8y7e:i (4.66) BS01 rna ? GO:0000387 ... P14678 38484052
    911695 8y7e:j (4.66) BS01 rna ? GO:0000243 ... P62314 38484052
    911696 8y7e:k (4.66) BS01 rna ? GO:0000245 ... P62316 38484052
    911697 8y7e:l (4.66) BS01 rna ? GO:0000245 ... P62304 38484052
    911698 8y7e:m (4.66) BS01 rna ? GO:0000387 ... P62306 38484052
    911699 8y7e:n (4.66) BS01 rna ? GO:0000245 ... P62308 38484052
    911700 8y7e:v (4.66) BS01 rna ? GO:0000380 ... Q9BWG6 38484052
    911701 8y7e:v (4.66) BS02 ZN ? GO:0000380 ... Q9BWG6 38484052
    911702 8y7g:A (3.15) BS01 rna N/A N/A A0A0H2SHM8 38967023
    911703 8y7g:A (3.15) BS02 rna N/A N/A A0A0H2SHM8 38967023
    911704 8y7g:A (3.15) BS03 ACT N/A N/A A0A0H2SHM8 38967023
    911705 8y7g:B (3.15) BS01 rna N/A N/A A0A0H2SHM8 38967023
    911706 8y7g:B (3.15) BS02 rna N/A N/A A0A0H2SHM8 38967023
    911707 8y7g:B (3.15) BS03 ACT N/A N/A A0A0H2SHM8 38967023
    911708 8y7l:B (2.683) BS01 A1D59 N/A GO:0003677 ... P22736 39807329
    911709 8y7s:A (2.68) BS01 TPP N/A N/A A0A6M5J4S0 N/A
    911710 8y7s:A (2.68) BS02 MG N/A N/A A0A6M5J4S0 N/A
    911711 8y7s:A (2.68) BS03 TPP N/A N/A A0A6M5J4S0 N/A
    911712 8y7s:B (2.68) BS01 TPP N/A N/A A0A6M5J4S0 N/A
    911713 8y7s:B (2.68) BS02 MG N/A N/A A0A6M5J4S0 N/A
    911714 8y7s:B (2.68) BS03 TPP N/A N/A A0A6M5J4S0 N/A
    911715 8y7s:C (2.68) BS01 TPP N/A N/A A0A6M5J4S0 N/A
    911716 8y7s:C (2.68) BS02 MG N/A N/A A0A6M5J4S0 N/A
    911717 8y7s:D (2.68) BS01 TPP N/A N/A A0A6M5J4S0 N/A
    911718 8y7s:D (2.68) BS02 MG N/A N/A A0A6M5J4S0 N/A
    911719 8y7s:E (2.68) BS01 TPP N/A N/A A0A6M5J4S0 N/A
    911720 8y7s:E (2.68) BS02 TPP N/A N/A A0A6M5J4S0 N/A
    911721 8y7s:E (2.68) BS03 MG N/A N/A A0A6M5J4S0 N/A
    911722 8y7s:F (2.68) BS01 TPP N/A N/A A0A6M5J4S0 N/A
    911723 8y7s:F (2.68) BS02 MG N/A N/A A0A6M5J4S0 N/A
    911724 8y7s:G (2.68) BS01 TPP N/A N/A A0A6M5J4S0 N/A
    911725 8y7s:G (2.68) BS02 MG N/A N/A A0A6M5J4S0 N/A
    911726 8y7s:H (2.68) BS01 TPP N/A N/A A0A6M5J4S0 N/A
    911727 8y7s:H (2.68) BS02 MG N/A N/A A0A6M5J4S0 N/A
    911728 8y7s:I (2.68) BS01 TPP N/A N/A A0A6M5J4S0 N/A
    911729 8y7s:I (2.68) BS02 MG N/A N/A A0A6M5J4S0 N/A
    911730 8y7s:J (2.68) BS01 TPP N/A N/A A0A6M5J4S0 N/A
    911731 8y7s:J (2.68) BS02 MG N/A N/A A0A6M5J4S0 N/A
    911732 8y7s:J (2.68) BS03 TPP N/A N/A A0A6M5J4S0 N/A
    911733 8y7s:K (2.68) BS01 TPP N/A N/A A0A6M5J4S0 N/A
    911734 8y7s:K (2.68) BS02 MG N/A N/A A0A6M5J4S0 N/A
    911735 8y7s:L (2.68) BS01 TPP N/A N/A A0A6M5J4S0 N/A
    911736 8y7s:L (2.68) BS02 TPP N/A N/A A0A6M5J4S0 N/A
    911737 8y7s:L (2.68) BS03 MG N/A N/A A0A6M5J4S0 N/A
    911738 8y7t:A (2.5) BS01 A1LX1 N/A N/A P0DTC1 N/A
    911739 8y7u:A (2.2) BS01 A1LX2 N/A N/A P0DTC1 N/A
    911740 8y7w:A (2.3) BS01 ZN N/A N/A Q5HE81 N/A
    911741 8y7y:A (3.24) BS01 MJJ N/A GO:0016020 ... Q5MQD0 38964329
    911742 8y7z:A (2.57) BS01 rna N/A GO:0003674 ... Q74DF6 39366953
    911743 8y7z:A (2.57) BS02 dna N/A GO:0003674 ... Q74DF6 39366953
    911744 8y7z:B (2.57) BS01 rna N/A GO:0003674 ... Q74DF5 39366953
    911745 8y7z:B (2.57) BS02 dna N/A GO:0003674 ... Q74DF5 39366953
    911746 8y7z:B (2.57) BS03 MG N/A GO:0003674 ... Q74DF5 39366953
    911747 8y80:A (3.38) BS01 rna N/A GO:0003674 ... Q74DF6 39366953
    911748 8y80:A (3.38) BS02 dna N/A GO:0003674 ... Q74DF6 39366953
    911749 8y80:B (3.38) BS01 rna N/A GO:0003674 ... Q74DF5 39366953
    911750 8y80:B (3.38) BS02 dna N/A GO:0003674 ... Q74DF5 39366953
    911751 8y80:B (3.38) BS03 MG N/A GO:0003674 ... Q74DF5 39366953
    911752 8y80:E (3.38) BS01 rna N/A GO:0003674 ... Q74DF6 39366953
    911753 8y80:E (3.38) BS02 dna N/A GO:0003674 ... Q74DF6 39366953
    911754 8y80:F (3.38) BS01 rna N/A GO:0003674 ... Q74DF5 39366953
    911755 8y80:F (3.38) BS02 dna N/A GO:0003674 ... Q74DF5 39366953
    911756 8y80:I (3.38) BS01 rna N/A GO:0003674 ... Q74DF6 39366953
    911757 8y80:I (3.38) BS02 dna N/A GO:0003674 ... Q74DF6 39366953
    911758 8y80:J (3.38) BS01 rna N/A GO:0003674 ... Q74DF5 39366953
    911759 8y80:J (3.38) BS02 dna N/A GO:0003674 ... Q74DF5 39366953
    911760 8y80:J (3.38) BS03 MG N/A GO:0003674 ... Q74DF5 39366953
    911761 8y80:M (3.38) BS01 rna N/A GO:0003674 ... Q74DF6 39366953
    911762 8y80:M (3.38) BS02 dna N/A GO:0003674 ... Q74DF6 39366953
    911763 8y80:N (3.38) BS01 rna N/A GO:0003674 ... Q74DF5 39366953
    911764 8y80:N (3.38) BS02 dna N/A GO:0003674 ... Q74DF5 39366953
    911765 8y81:B (2.89) BS01 Y01 N/A GO:0005768 ... P13386 39169187
    911766 8y82:A (3.4) BS01 rna N/A GO:0003674 ... Q74DF6 39366953
    911767 8y82:A (3.4) BS02 dna N/A GO:0003674 ... Q74DF6 39366953
    911768 8y82:B (3.4) BS01 rna N/A GO:0003674 ... Q74DF5 39366953
    911769 8y82:B (3.4) BS02 dna N/A GO:0003674 ... Q74DF5 39366953
    911770 8y82:B (3.4) BS03 MG N/A GO:0003674 ... Q74DF5 39366953
    911771 8y82:E (3.4) BS01 rna N/A GO:0003674 ... Q74DF6 39366953
    911772 8y82:E (3.4) BS02 dna N/A GO:0003674 ... Q74DF6 39366953
    911773 8y82:E (3.4) BS03 AMP N/A GO:0003674 ... Q74DF6 39366953
    911774 8y82:F (3.4) BS01 rna N/A GO:0003674 ... Q74DF5 39366953
    911775 8y82:F (3.4) BS02 dna N/A GO:0003674 ... Q74DF5 39366953
    911776 8y82:I (3.4) BS01 rna N/A GO:0003674 ... Q74DF6 39366953
    911777 8y82:I (3.4) BS02 dna N/A GO:0003674 ... Q74DF6 39366953
    911778 8y82:J (3.4) BS01 rna N/A GO:0003674 ... Q74DF5 39366953
    911779 8y82:J (3.4) BS02 dna N/A GO:0003674 ... Q74DF5 39366953
    911780 8y82:J (3.4) BS03 MG N/A GO:0003674 ... Q74DF5 39366953
    911781 8y82:M (3.4) BS01 rna N/A GO:0003674 ... Q74DF6 39366953
    911782 8y82:M (3.4) BS02 dna N/A GO:0003674 ... Q74DF6 39366953
    911783 8y82:M (3.4) BS03 AMP N/A GO:0003674 ... Q74DF6 39366953
    911784 8y82:N (3.4) BS01 rna N/A GO:0003674 ... Q74DF5 39366953
    911785 8y82:N (3.4) BS02 dna N/A GO:0003674 ... Q74DF5 39366953
    911786 8y83:A (2.0) BS01 NAD ? GO:0000166 ... A0A562MSV3 39059522
    911787 8y83:B (2.0) BS01 NAD ? GO:0000166 ... A0A562MSV3 39059522
    911788 8y84:A (2.98) BS01 Y01 N/A N/A P12371 39169187
    911789 8y84:B (2.98) BS01 Y01 N/A GO:0005768 ... P13386 39169187
    911790 8y85:A (2.73) BS01 BCT N/A GO:0005452 ... P48751 39033175
    911791 8y85:A (2.73) BS02 4KU N/A GO:0005452 ... P48751 39033175
    911792 8y85:B (2.73) BS01 4KU N/A GO:0005452 ... P48751 39033175
    911793 8y86:A (2.75) BS01 BCT N/A GO:0005452 ... P48751 39033175
    911794 8y8b:A (3.01) BS01 MJJ N/A GO:0016020 ... Q0ZME7 38964329
    911795 8y8j:A (3.57) BS01 MJJ N/A GO:0016020 ... Q0ZME7 38964329
    911796 8y8m:A (1.98) BS01 TPP N/A N/A A0A6M5J4S0 N/A
    911797 8y8m:A (1.98) BS02 MG N/A N/A A0A6M5J4S0 N/A
    911798 8y8z:A (3.29) BS01 A1LX3 ? GO:0003779 ... P23975 38750358
    911799 8y8z:E (3.29) BS01 A1LX3 ? GO:0003779 ... P23975 38750358
    911800 8y90:A (3.15) BS01 A1LX6 ? GO:0003779 ... P23975 38750358

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).