SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    912001 8ybk:G (2.69) BS01 dna N/A GO:0000786 ... P04908 38972377
    912002 8ybk:G (2.69) BS02 dna N/A GO:0000786 ... P04908 38972377
    912003 8ybk:H (2.69) BS01 dna N/A GO:0000786 ... P06899 38972377
    912004 8ybk:H (2.69) BS02 dna N/A GO:0000786 ... P06899 38972377
    912005 8ybq:A (2.59) BS01 CHT N/A GO:0016020 ... N/A 39141726
    912006 8ybq:B (2.59) BS01 CHT N/A GO:0016020 ... N/A 39141726
    912007 8ybq:C (2.59) BS01 CHT N/A GO:0016020 ... N/A 39141726
    912008 8yc0:e (4.12) BS01 peptide ? GO:0004888 ... P07766 38657677
    912009 8yc0:m (4.12) BS01 peptide ? GO:0002250 ... A0JD36
    B7Z8K6
    38657677
    912010 8yc0:m (4.12) BS02 CLR ? GO:0002250 ... A0JD36
    B7Z8K6
    38657677
    912011 8yc0:n (4.12) BS01 peptide ? GO:0002250 ... P0CF51
    Q99603
    38657677
    912012 8ycp:A (2.87) BS01 A1LZ2 N/A N/A Q8NER1 N/A
    912013 8ycp:B (2.87) BS01 A1LZ2 N/A N/A Q8NER1 N/A
    912014 8ycp:B (2.87) BS02 6OU N/A N/A Q8NER1 N/A
    912015 8ycp:B (2.87) BS03 6OU N/A N/A Q8NER1 N/A
    912016 8ycp:C (2.87) BS01 A1LZ2 N/A N/A Q8NER1 N/A
    912017 8ycp:D (2.87) BS01 A1LZ2 N/A N/A Q8NER1 N/A
    912018 8ycp:D (2.87) BS02 6OU N/A N/A Q8NER1 N/A
    912019 8yd3:A (1.96) BS01 ZN N/A GO:0000302 ... P00441 N/A
    912020 8yd3:A (1.96) BS02 A1LYN N/A GO:0000302 ... P00441 N/A
    912021 8yd3:B (1.96) BS01 ZN N/A GO:0000302 ... P00441 N/A
    912022 8yd3:C (1.96) BS01 ZN N/A GO:0000302 ... P00441 N/A
    912023 8yd3:C (1.96) BS02 A1LYN N/A GO:0000302 ... P00441 N/A
    912024 8yd3:D (1.96) BS01 A1LYN N/A GO:0000302 ... P00441 N/A
    912025 8yd3:D (1.96) BS02 ZN N/A GO:0000302 ... P00441 N/A
    912026 8yd3:E (1.96) BS01 ZN N/A GO:0000302 ... P00441 N/A
    912027 8yd3:F (1.96) BS01 ZN N/A GO:0000302 ... P00441 N/A
    912028 8yd3:H (1.96) BS01 ZN N/A GO:0000302 ... P00441 N/A
    912029 8yd3:H (1.96) BS02 A1LYN N/A GO:0000302 ... P00441 N/A
    912030 8yd3:I (1.96) BS01 ZN N/A GO:0000302 ... P00441 N/A
    912031 8yd3:I (1.96) BS02 A1LYN N/A GO:0000302 ... P00441 N/A
    912032 8yd3:J (1.96) BS01 ZN N/A GO:0000302 ... P00441 N/A
    912033 8ydb:A (3.4) BS01 rna N/A N/A N/A 39047725
    912034 8ydb:A (3.4) BS02 rna N/A N/A N/A 39047725
    912035 8ydb:B (3.4) BS01 rna N/A GO:0004519 ... N/A 39047725
    912036 8ydb:D (3.4) BS01 rna N/A N/A N/A 39047725
    912037 8ydb:E (3.4) BS01 rna N/A N/A N/A 39047725
    912038 8ydb:E (3.4) BS02 rna N/A N/A N/A 39047725
    912039 8ydb:F (3.4) BS01 rna N/A N/A N/A 39047725
    912040 8ydb:F (3.4) BS02 rna N/A N/A N/A 39047725
    912041 8ydb:G (3.4) BS01 rna N/A N/A N/A 39047725
    912042 8ydb:G (3.4) BS02 rna N/A N/A N/A 39047725
    912043 8ydb:H (3.4) BS01 rna N/A N/A N/A 39047725
    912044 8ydb:H (3.4) BS02 rna N/A N/A N/A 39047725
    912045 8ydb:I (3.4) BS01 rna N/A N/A N/A 39047725
    912046 8ydb:I (3.4) BS02 rna N/A N/A N/A 39047725
    912047 8ydb:J (3.4) BS01 rna N/A GO:0003676 ... N/A 39047725
    912048 8ydb:J (3.4) BS02 rna N/A GO:0003676 ... N/A 39047725
    912049 8ydb:J (3.4) BS03 rna N/A GO:0003676 ... N/A 39047725
    912050 8ydm:A (3.05) BS01 BCL N/A N/A P07503 39912559
    912051 8ydm:A (3.05) BS02 U4Z N/A N/A P07503 39912559
    912052 8ydm:A (3.05) BS03 BCL N/A N/A P07503 39912559
    912053 8ydm:A (3.05) BS04 BCL N/A N/A P07503 39912559
    912054 8ydm:B (3.05) BS01 BCL N/A N/A P09927 39912559
    912055 8ydm:B (3.05) BS02 U4Z N/A N/A P09927 39912559
    912056 8ydm:B (3.05) BS03 BCL N/A N/A P09927 39912559
    912057 8ydm:B (3.05) BS04 BCL N/A N/A P09927 39912559
    912058 8ydm:C (3.05) BS01 BCL N/A N/A P33325 39912559
    912059 8ydm:C (3.05) BS02 HEM N/A N/A P33325 39912559
    912060 8ydm:C (3.05) BS03 HEM N/A N/A P33325 39912559
    912061 8ydm:C (3.05) BS04 HEM N/A N/A P33325 39912559
    912062 8ydm:C (3.05) BS05 HEM N/A N/A P33325 39912559
    912063 8ydm:D (3.05) BS01 BCL N/A N/A P07503 39912559
    912064 8ydm:D (3.05) BS02 U4Z N/A N/A P07503 39912559
    912065 8ydm:D (3.05) BS03 BCL N/A N/A P07503 39912559
    912066 8ydm:D (3.05) BS04 U4Z N/A N/A P07503 39912559
    912067 8ydm:D (3.05) BS05 BCL N/A N/A P07503 39912559
    912068 8ydm:E (3.05) BS01 U4Z N/A N/A P09927 39912559
    912069 8ydm:E (3.05) BS02 BCL N/A N/A P09927 39912559
    912070 8ydm:E (3.05) BS03 BCL N/A N/A P09927 39912559
    912071 8ydm:F (3.05) BS01 U4Z N/A N/A P07503 39912559
    912072 8ydm:F (3.05) BS02 BCL N/A N/A P07503 39912559
    912073 8ydm:F (3.05) BS03 BCL N/A N/A P07503 39912559
    912074 8ydm:F (3.05) BS04 BCL N/A N/A P07503 39912559
    912075 8ydm:G (3.05) BS01 BCL N/A N/A P09927 39912559
    912076 8ydm:G (3.05) BS02 BCL N/A N/A P09927 39912559
    912077 8ydm:G (3.05) BS03 BCL N/A N/A P09927 39912559
    912078 8ydm:G (3.05) BS04 BCL N/A N/A P09927 39912559
    912079 8ydm:H (3.05) BS01 BCL N/A N/A P07503 39912559
    912080 8ydm:H (3.05) BS02 U4Z N/A N/A P07503 39912559
    912081 8ydm:H (3.05) BS03 BCL N/A N/A P07503 39912559
    912082 8ydm:H (3.05) BS04 BCL N/A N/A P07503 39912559
    912083 8ydm:H (3.05) BS05 U4Z N/A N/A P07503 39912559
    912084 8ydm:I (3.05) BS01 BCL N/A N/A P09927 39912559
    912085 8ydm:I (3.05) BS02 U4Z N/A N/A P09927 39912559
    912086 8ydm:I (3.05) BS03 BCL N/A N/A P09927 39912559
    912087 8ydm:I (3.05) BS04 BCL N/A N/A P09927 39912559
    912088 8ydm:J (3.05) BS01 BCL N/A N/A P07503 39912559
    912089 8ydm:J (3.05) BS02 BCL N/A N/A P07503 39912559
    912090 8ydm:J (3.05) BS03 U4Z N/A N/A P07503 39912559
    912091 8ydm:J (3.05) BS04 BCL N/A N/A P07503 39912559
    912092 8ydm:K (3.05) BS01 BCL N/A N/A P09927 39912559
    912093 8ydm:K (3.05) BS02 BCL N/A N/A P09927 39912559
    912094 8ydm:K (3.05) BS03 U4Z N/A N/A P09927 39912559
    912095 8ydm:K (3.05) BS04 BCL N/A N/A P09927 39912559
    912096 8ydm:L (3.05) BS01 MQE N/A N/A P11695 39912559
    912097 8ydm:L (3.05) BS02 BCL N/A N/A P11695 39912559
    912098 8ydm:L (3.05) BS03 BPH N/A N/A P11695 39912559
    912099 8ydm:L (3.05) BS04 BPH N/A N/A P11695 39912559
    912100 8ydm:L (3.05) BS05 BCL N/A N/A P11695 39912559
    912101 8ydm:L (3.05) BS06 MQE N/A N/A P11695 39912559
    912102 8ydm:L (3.05) BS07 MN N/A N/A P11695 39912559
    912103 8ydm:L (3.05) BS08 BPH N/A N/A P11695 39912559
    912104 8ydm:M (3.05) BS01 BPH N/A N/A P09438 39912559
    912105 8ydm:M (3.05) BS02 BCL N/A N/A P09438 39912559
    912106 8ydm:M (3.05) BS03 MQE N/A N/A P09438 39912559
    912107 8ydm:M (3.05) BS04 MN N/A N/A P09438 39912559
    912108 8ydm:M (3.05) BS05 BCL N/A N/A P09438 39912559
    912109 8ydm:M (3.05) BS06 BPH N/A N/A P09438 39912559
    912110 8ydm:O (3.05) BS01 BCL N/A N/A P07503 39912559
    912111 8ydm:O (3.05) BS02 U4Z N/A N/A P07503 39912559
    912112 8ydm:O (3.05) BS03 BCL N/A N/A P07503 39912559
    912113 8ydm:O (3.05) BS04 BCL N/A N/A P07503 39912559
    912114 8ydm:O (3.05) BS05 U4Z N/A N/A P07503 39912559
    912115 8ydm:P (3.05) BS01 BCL N/A N/A P09927 39912559
    912116 8ydm:P (3.05) BS02 U4Z N/A N/A P09927 39912559
    912117 8ydm:P (3.05) BS03 BCL N/A N/A P09927 39912559
    912118 8ydm:P (3.05) BS04 U4Z N/A N/A P09927 39912559
    912119 8ydm:P (3.05) BS05 BCL N/A N/A P09927 39912559
    912120 8ydm:P (3.05) BS06 U4Z N/A N/A P09927 39912559
    912121 8ydm:Q (3.05) BS01 BCL N/A N/A P07503 39912559
    912122 8ydm:Q (3.05) BS02 U4Z N/A N/A P07503 39912559
    912123 8ydm:Q (3.05) BS03 BCL N/A N/A P07503 39912559
    912124 8ydm:Q (3.05) BS04 BCL N/A N/A P07503 39912559
    912125 8ydm:R (3.05) BS01 BCL N/A N/A P09927 39912559
    912126 8ydm:R (3.05) BS02 U4Z N/A N/A P09927 39912559
    912127 8ydm:R (3.05) BS03 U4Z N/A N/A P09927 39912559
    912128 8ydm:R (3.05) BS04 BCL N/A N/A P09927 39912559
    912129 8ydm:R (3.05) BS05 BCL N/A N/A P09927 39912559
    912130 8ye0:A (1.94) BS01 PIS N/A GO:0016740 ... A0A551Z2V8 38837490
    912131 8ye0:B (1.94) BS01 PIS N/A GO:0016740 ... A0A551Z2V8 38837490
    912132 8ye0:C (1.94) BS01 PIS N/A GO:0016740 ... A0A551Z2V8 38837490
    912133 8ye0:D (1.94) BS01 PIS N/A GO:0016740 ... A0A551Z2V8 38837490
    912134 8ye4:A (3.2) BS01 peptide N/A GO:0016020 ... Q6IVJ7 39002680
    912135 8ye4:C (3.2) BS01 peptide N/A GO:0016020 ... Q6IVJ7 39002680
    912136 8ye4:G (3.2) BS01 peptide N/A N/A N/A 39002680
    912137 8ye4:H (3.2) BS01 peptide N/A N/A N/A 39002680
    912138 8ye4:I (3.2) BS01 peptide N/A N/A N/A 39002680
    912139 8ye4:J (3.2) BS01 peptide N/A N/A N/A 39002680
    912140 8ye6:A (2.95) BS01 rna N/A GO:0003676 ... Q99ZW2 38842649
    912141 8ye6:B (2.95) BS01 rna N/A N/A N/A 38842649
    912142 8ye9:A (3.43) BS01 rna N/A GO:0003676 ... Q99ZW2 38842649
    912143 8ye9:B (3.43) BS01 rna N/A N/A N/A 38842649
    912144 8yeb:A (2.2) BS01 MG N/A N/A A0A1L7NQ96 N/A
    912145 8yeb:B (2.2) BS01 MG N/A N/A A0A1L7NQ96 N/A
    912146 8yeb:C (2.2) BS01 MG N/A N/A A0A1L7NQ96 N/A
    912147 8yeb:D (2.2) BS01 MG N/A N/A A0A1L7NQ96 N/A
    912148 8yeb:E (2.2) BS01 MG N/A N/A A0A1L7NQ96 N/A
    912149 8yeb:F (2.2) BS01 MG N/A N/A A0A1L7NQ96 N/A
    912150 8yeb:G (2.2) BS01 MG N/A N/A A0A1L7NQ96 N/A
    912151 8yeb:H (2.2) BS01 MG N/A N/A A0A1L7NQ96 N/A
    912152 8yeb:I (2.2) BS01 MG N/A N/A A0A1L7NQ96 N/A
    912153 8yeb:J (2.2) BS01 MG N/A N/A A0A1L7NQ96 N/A
    912154 8yeb:K (2.2) BS01 MG N/A N/A A0A1L7NQ96 N/A
    912155 8yeb:L (2.2) BS01 MG N/A N/A A0A1L7NQ96 N/A
    912156 8yeb:M (2.2) BS01 MG N/A N/A A0A1L7NQ96 N/A
    912157 8yeb:N (2.2) BS01 MG N/A N/A A0A1L7NQ96 N/A
    912158 8yeb:O (2.2) BS01 MG N/A N/A A0A1L7NQ96 N/A
    912159 8yeb:P (2.2) BS01 MG N/A N/A A0A1L7NQ96 N/A
    912160 8yec:A (2.5) BS01 PSJ N/A N/A A0A1L7NQ96 N/A
    912161 8yec:A (2.5) BS02 FUD N/A N/A A0A1L7NQ96 N/A
    912162 8yec:A (2.5) BS03 MG N/A N/A A0A1L7NQ96 N/A
    912163 8yec:B (2.5) BS01 PSJ N/A N/A A0A1L7NQ96 N/A
    912164 8yec:B (2.5) BS02 FUD N/A N/A A0A1L7NQ96 N/A
    912165 8yec:B (2.5) BS03 MG N/A N/A A0A1L7NQ96 N/A
    912166 8yec:C (2.5) BS01 PSJ N/A N/A A0A1L7NQ96 N/A
    912167 8yec:C (2.5) BS02 FUD N/A N/A A0A1L7NQ96 N/A
    912168 8yec:C (2.5) BS03 MG N/A N/A A0A1L7NQ96 N/A
    912169 8yec:D (2.5) BS01 PSJ N/A N/A A0A1L7NQ96 N/A
    912170 8yec:D (2.5) BS02 FUD N/A N/A A0A1L7NQ96 N/A
    912171 8yec:D (2.5) BS03 MG N/A N/A A0A1L7NQ96 N/A
    912172 8yec:E (2.5) BS01 PSJ N/A N/A A0A1L7NQ96 N/A
    912173 8yec:E (2.5) BS02 FUD N/A N/A A0A1L7NQ96 N/A
    912174 8yec:E (2.5) BS03 MG N/A N/A A0A1L7NQ96 N/A
    912175 8yec:F (2.5) BS01 PSJ N/A N/A A0A1L7NQ96 N/A
    912176 8yec:F (2.5) BS02 FUD N/A N/A A0A1L7NQ96 N/A
    912177 8yec:F (2.5) BS03 MG N/A N/A A0A1L7NQ96 N/A
    912178 8yec:G (2.5) BS01 PSJ N/A N/A A0A1L7NQ96 N/A
    912179 8yec:G (2.5) BS02 FUD N/A N/A A0A1L7NQ96 N/A
    912180 8yec:G (2.5) BS03 MG N/A N/A A0A1L7NQ96 N/A
    912181 8yec:H (2.5) BS01 PSJ N/A N/A A0A1L7NQ96 N/A
    912182 8yec:H (2.5) BS02 FUD N/A N/A A0A1L7NQ96 N/A
    912183 8yec:H (2.5) BS03 MG N/A N/A A0A1L7NQ96 N/A
    912184 8yec:I (2.5) BS01 PSJ N/A N/A A0A1L7NQ96 N/A
    912185 8yec:I (2.5) BS02 FUD N/A N/A A0A1L7NQ96 N/A
    912186 8yec:I (2.5) BS03 MG N/A N/A A0A1L7NQ96 N/A
    912187 8yec:J (2.5) BS01 PSJ N/A N/A A0A1L7NQ96 N/A
    912188 8yec:J (2.5) BS02 FUD N/A N/A A0A1L7NQ96 N/A
    912189 8yec:J (2.5) BS03 MG N/A N/A A0A1L7NQ96 N/A
    912190 8yec:K (2.5) BS01 PSJ N/A N/A A0A1L7NQ96 N/A
    912191 8yec:K (2.5) BS02 FUD N/A N/A A0A1L7NQ96 N/A
    912192 8yec:K (2.5) BS03 MG N/A N/A A0A1L7NQ96 N/A
    912193 8yec:L (2.5) BS01 PSJ N/A N/A A0A1L7NQ96 N/A
    912194 8yec:L (2.5) BS02 FUD N/A N/A A0A1L7NQ96 N/A
    912195 8yec:L (2.5) BS03 MG N/A N/A A0A1L7NQ96 N/A
    912196 8yec:M (2.5) BS01 PSJ N/A N/A A0A1L7NQ96 N/A
    912197 8yec:M (2.5) BS02 FUD N/A N/A A0A1L7NQ96 N/A
    912198 8yec:M (2.5) BS03 MG N/A N/A A0A1L7NQ96 N/A
    912199 8yec:N (2.5) BS01 PSJ N/A N/A A0A1L7NQ96 N/A
    912200 8yec:N (2.5) BS02 FUD N/A N/A A0A1L7NQ96 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).