SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    912401 8ygu:B (3.13) BS01 peptide N/A N/A A0A5J6BC68 39833145
    912402 8ygw:A (3.301) BS01 B96 2.7.11.24 GO:0000165 ... Q15759 N/A
    912403 8ygy:A (2.401) BS01 FUC 3.4.21.35 GO:0003073 ... P06870 N/A
    912404 8yh0:R (2.86) BS01 NEC N/A GO:0001609 ... A0A5P9VSM6
    P03435
    W5QED6
    39511145
    912405 8yh2:R (3.27) BS01 ADN N/A GO:0001609 ... A0A5P9VSM6
    P03435
    W5QED6
    39511145
    912406 8yh3:R (3.4) BS01 6MD N/A GO:0001609 ... A0A5P9VSM6
    P03435
    W5QED6
    39511145
    912407 8yh5:R (3.66) BS01 ZIR N/A GO:0001609 ... A0A5P9VSM6
    P03435
    W5QED6
    39511145
    912408 8yh6:R (3.62) BS01 XS0 N/A GO:0001609 ... A0A5P9VSM6
    P03435
    W5QED6
    39511145
    912409 8yh9:A (3.35) BS01 rna N/A N/A N/A 39047725
    912410 8yh9:B (3.35) BS01 rna N/A GO:0004519 ... N/A 39047725
    912411 8yh9:D (3.35) BS01 rna N/A N/A N/A 39047725
    912412 8yh9:E (3.35) BS01 rna N/A N/A N/A 39047725
    912413 8yh9:F (3.35) BS01 rna N/A N/A N/A 39047725
    912414 8yh9:G (3.35) BS01 rna N/A N/A N/A 39047725
    912415 8yh9:H (3.35) BS01 rna N/A N/A N/A 39047725
    912416 8yh9:I (3.35) BS01 rna N/A N/A N/A 39047725
    912417 8yh9:J (3.35) BS01 rna N/A GO:0003676 ... N/A 39047725
    912418 8yha:A (3.4) BS01 rna N/A GO:0003676 ... A0A1V6F8C5 39047725
    912419 8yha:A (3.4) BS02 dna N/A GO:0003676 ... A0A1V6F8C5 39047725
    912420 8yha:A (3.4) BS03 ZN N/A GO:0003676 ... A0A1V6F8C5 39047725
    912421 8yha:B (3.4) BS01 rna N/A GO:0016787 ... A0A1V6F8C4 39047725
    912422 8yha:B (3.4) BS02 dna N/A GO:0016787 ... A0A1V6F8C4 39047725
    912423 8yha:D (3.4) BS01 rna N/A N/A A0A1V6F8B5 39047725
    912424 8yha:D (3.4) BS02 dna N/A N/A A0A1V6F8B5 39047725
    912425 8yha:E (3.4) BS01 rna N/A N/A A0A1V6F8B5 39047725
    912426 8yha:E (3.4) BS02 dna N/A N/A A0A1V6F8B5 39047725
    912427 8yha:F (3.4) BS01 rna N/A N/A A0A1V6F8B5 39047725
    912428 8yha:F (3.4) BS02 dna N/A N/A A0A1V6F8B5 39047725
    912429 8yha:G (3.4) BS01 rna N/A N/A A0A1V6F8B5 39047725
    912430 8yha:G (3.4) BS02 dna N/A N/A A0A1V6F8B5 39047725
    912431 8yha:H (3.4) BS01 rna N/A N/A A0A1V6F8B5 39047725
    912432 8yha:H (3.4) BS02 dna N/A N/A A0A1V6F8B5 39047725
    912433 8yha:I (3.4) BS01 rna N/A N/A A0A1V6F8B5 39047725
    912434 8yha:I (3.4) BS02 dna N/A N/A A0A1V6F8B5 39047725
    912435 8yha:J (3.4) BS01 rna N/A N/A A0A1V6F8D1 39047725
    912436 8yha:J (3.4) BS02 dna N/A N/A A0A1V6F8D1 39047725
    912437 8yha:J (3.4) BS03 ZN N/A N/A A0A1V6F8D1 39047725
    912438 8yha:K (3.4) BS01 dna N/A N/A A0A1V6F8C9 39047725
    912439 8yhd:A (2.93) BS01 rna N/A N/A N/A 39143216
    912440 8yhd:A (2.93) BS02 ZN N/A N/A N/A 39143216
    912441 8yhd:B (2.93) BS01 rna N/A N/A N/A 39143216
    912442 8yhd:C (2.93) BS01 rna N/A N/A N/A 39143216
    912443 8yhd:C (2.93) BS02 rna N/A N/A N/A 39143216
    912444 8yhd:C (2.93) BS03 ZN N/A N/A N/A 39143216
    912445 8yhd:D (2.93) BS01 rna N/A N/A N/A 39143216
    912446 8yhd:D (2.93) BS02 rna N/A N/A N/A 39143216
    912447 8yhd:D (2.93) BS03 ZN N/A N/A N/A 39143216
    912448 8yhd:E (2.93) BS01 rna N/A N/A N/A 39143216
    912449 8yhd:E (2.93) BS02 rna N/A N/A N/A 39143216
    912450 8yhd:E (2.93) BS03 ZN N/A N/A N/A 39143216
    912451 8yhd:F (2.93) BS01 rna N/A N/A N/A 39143216
    912452 8yhd:F (2.93) BS02 rna N/A N/A N/A 39143216
    912453 8yhd:F (2.93) BS03 ZN N/A N/A N/A 39143216
    912454 8yhd:G (2.93) BS01 rna N/A N/A N/A 39143216
    912455 8yhd:G (2.93) BS02 ZN N/A N/A N/A 39143216
    912456 8yhd:H (2.93) BS01 rna N/A N/A N/A 39143216
    912457 8yhd:H (2.93) BS02 ZN N/A N/A N/A 39143216
    912458 8yhd:H (2.93) BS03 ZN N/A N/A N/A 39143216
    912459 8yhd:I (2.93) BS01 rna N/A N/A N/A 39143216
    912460 8yhd:J (2.93) BS01 rna N/A N/A N/A 39143216
    912461 8yhd:J (2.93) BS02 rna N/A N/A N/A 39143216
    912462 8yhd:J (2.93) BS03 ZN N/A N/A N/A 39143216
    912463 8yhd:K (2.93) BS01 rna N/A N/A N/A 39143216
    912464 8yhd:L (2.93) BS01 rna N/A N/A N/A 39143216
    912465 8yhd:O (2.93) BS01 rna N/A N/A N/A 39143216
    912466 8yhd:O (2.93) BS02 rna N/A N/A N/A 39143216
    912467 8yhd:O (2.93) BS03 ZN N/A N/A N/A 39143216
    912468 8yhe:A (3.07) BS01 rna N/A N/A N/A 39143216
    912469 8yhe:A (3.07) BS02 ZN N/A N/A N/A 39143216
    912470 8yhe:B (3.07) BS01 rna N/A N/A N/A 39143216
    912471 8yhe:B (3.07) BS02 rna N/A N/A N/A 39143216
    912472 8yhe:B (3.07) BS03 ZN N/A N/A N/A 39143216
    912473 8yhe:C (3.07) BS01 rna N/A N/A N/A 39143216
    912474 8yhe:C (3.07) BS02 rna N/A N/A N/A 39143216
    912475 8yhe:C (3.07) BS03 ZN N/A N/A N/A 39143216
    912476 8yhe:D (3.07) BS01 rna N/A N/A N/A 39143216
    912477 8yhe:D (3.07) BS02 rna N/A N/A N/A 39143216
    912478 8yhe:D (3.07) BS03 ZN N/A N/A N/A 39143216
    912479 8yhe:E (3.07) BS01 rna N/A N/A N/A 39143216
    912480 8yhe:E (3.07) BS02 rna N/A N/A N/A 39143216
    912481 8yhe:E (3.07) BS03 ZN N/A N/A N/A 39143216
    912482 8yhe:F (3.07) BS01 rna N/A N/A N/A 39143216
    912483 8yhe:F (3.07) BS02 rna N/A N/A N/A 39143216
    912484 8yhe:F (3.07) BS03 ZN N/A N/A N/A 39143216
    912485 8yhe:G (3.07) BS01 rna N/A N/A N/A 39143216
    912486 8yhe:G (3.07) BS02 rna N/A N/A N/A 39143216
    912487 8yhe:H (3.07) BS01 rna N/A N/A N/A 39143216
    912488 8yhe:H (3.07) BS02 ZN N/A N/A N/A 39143216
    912489 8yhe:I (3.07) BS01 rna N/A N/A N/A 39143216
    912490 8yhe:J (3.07) BS01 rna N/A N/A N/A 39143216
    912491 8yhe:J (3.07) BS02 rna N/A N/A N/A 39143216
    912492 8yhe:J (3.07) BS03 ZN N/A N/A N/A 39143216
    912493 8yhe:K (3.07) BS01 rna N/A N/A N/A 39143216
    912494 8yhe:L (3.07) BS01 rna N/A N/A N/A 39143216
    912495 8yhf:A (1.4) BS01 A1D6I 2.7.11.30 GO:0004672 ... P36897 N/A
    912496 8yhh:A (1.95) BS01 ADP ? GO:0003777 ... P52732 N/A
    912497 8yhh:B (1.95) BS01 ADP ? GO:0003777 ... P52732 N/A
    912498 8yhl:A (1.47) BS01 A1D6I 2.7.11.30 GO:0004672 ... P36897 N/A
    912499 8yhq:C (2.42) BS01 HEM N/A N/A P00163 39601138
    912500 8yhq:C (2.42) BS02 HEM N/A N/A P00163 39601138
    912501 8yhq:C (2.42) BS03 CN5 N/A N/A P00163 39601138
    912502 8yhq:C (2.42) BS04 UQ6 N/A N/A P00163 39601138
    912503 8yhq:C (2.42) BS05 A1D6K N/A N/A P00163 39601138
    912504 8yhq:D (2.42) BS01 HEM N/A N/A P07143 39601138
    912505 8yhq:L (2.42) BS01 UQ6 N/A N/A P00163 39601138
    912506 8yhq:L (2.42) BS02 HEM N/A N/A P00163 39601138
    912507 8yhq:L (2.42) BS03 HEM N/A N/A P00163 39601138
    912508 8yhq:L (2.42) BS04 A1D6K N/A N/A P00163 39601138
    912509 8yhq:M (2.42) BS01 HEM N/A N/A P07143 39601138
    912510 8yhr:A (1.7) BS01 ORO 1.3.5.2 GO:0004151 ... Q02127 38724483
    912511 8yhr:A (1.7) BS02 FMN 1.3.5.2 GO:0004151 ... Q02127 38724483
    912512 8yhr:A (1.7) BS03 A1LYU 1.3.5.2 GO:0004151 ... Q02127 38724483
    912513 8yhs:A (1.5) BS01 A1D6J ? N/A Q58F21 N/A
    912514 8yhw:A (2.9) BS01 AGS 2.7.11.25 GO:0004672 ... Q99558 N/A
    912515 8yhw:A (2.9) BS02 MG 2.7.11.25 GO:0004672 ... Q99558 N/A
    912516 8yhw:B (2.9) BS01 AGS 2.7.11.25 GO:0004672 ... Q99558 N/A
    912517 8yhw:B (2.9) BS02 MG 2.7.11.25 GO:0004672 ... Q99558 N/A
    912518 8yhw:C (2.9) BS01 AGS 2.7.11.25 GO:0004672 ... Q99558 N/A
    912519 8yhw:C (2.9) BS02 MG 2.7.11.25 GO:0004672 ... Q99558 N/A
    912520 8yhw:D (2.9) BS01 AGS 2.7.11.25 GO:0004672 ... Q99558 N/A
    912521 8yhw:D (2.9) BS02 MG 2.7.11.25 GO:0004672 ... Q99558 N/A
    912522 8yhx:H (2.81) BS01 APR N/A N/A C1PH93 39465277
    912523 8yhx:J (2.81) BS01 APR N/A N/A C1PH93 39465277
    912524 8yhx:L (2.81) BS01 APR N/A N/A C1PH93 39465277
    912525 8yhx:N (2.81) BS01 APR N/A N/A C1PH93 39465277
    912526 8yhx:P (2.81) BS01 APR N/A N/A C1PH93 39465277
    912527 8yhx:R (2.81) BS01 APR N/A N/A C1PH93 39465277
    912528 8yhz:H (1.62) BS01 peptide N/A N/A N/A 39461335
    912529 8yhz:L (1.62) BS01 peptide N/A N/A N/A 39461335
    912530 8yib:A (2.27) BS01 4I1 3.1.1.3 N/A A0A0U1MWF9 38757397
    912531 8yib:A (2.27) BS02 ZN 3.1.1.3 N/A A0A0U1MWF9 38757397
    912532 8yib:A (2.27) BS03 CA 3.1.1.3 N/A A0A0U1MWF9 38757397
    912533 8yib:B (2.27) BS01 OCA 3.1.1.3 N/A A0A0U1MWF9 38757397
    912534 8yib:B (2.27) BS02 4I1 3.1.1.3 N/A A0A0U1MWF9 38757397
    912535 8yib:B (2.27) BS03 ZN 3.1.1.3 N/A A0A0U1MWF9 38757397
    912536 8yib:B (2.27) BS04 CA 3.1.1.3 N/A A0A0U1MWF9 38757397
    912537 8yic:R (3.47) BS01 A1LYQ N/A GO:0003796 ... P00720
    P21453
    N/A
    912538 8yie:A (1.7) BS01 AC1 N/A GO:0004556 ... D2YYD7 N/A
    912539 8yie:B (1.7) BS01 AC1 N/A GO:0004556 ... D2YYD7 N/A
    912540 8yif:A (1.6) BS01 A1L2I N/A GO:0004556 ... D2YYD7 N/A
    912541 8yik:A (1.3) BS01 ATP N/A N/A P0C9C2 39166497
    912542 8yim:A (1.35) BS01 GNP N/A N/A Q9ULC3 39615683
    912543 8yim:A (1.35) BS02 MG N/A N/A Q9ULC3 39615683
    912544 8yin:C (2.74) BS01 HEM N/A N/A P00163 39601138
    912545 8yin:C (2.74) BS02 HEM N/A N/A P00163 39601138
    912546 8yin:C (2.74) BS03 CN5 N/A N/A P00163 39601138
    912547 8yin:C (2.74) BS04 UQ6 N/A N/A P00163 39601138
    912548 8yin:C (2.74) BS05 A1D6O N/A N/A P00163 39601138
    912549 8yin:D (2.74) BS01 HEM N/A N/A P07143 39601138
    912550 8yin:N (2.74) BS01 HEM N/A N/A P00163 39601138
    912551 8yin:N (2.74) BS02 UQ6 N/A N/A P00163 39601138
    912552 8yin:N (2.74) BS03 HEM N/A N/A P00163 39601138
    912553 8yin:N (2.74) BS04 A1D6O N/A N/A P00163 39601138
    912554 8yin:O (2.74) BS01 HEM N/A N/A P07143 39601138
    912555 8yiv:A (2.101) BS01 peptide N/A N/A F6IQR9 39576860
    912556 8yiv:D (2.101) BS01 peptide N/A N/A P01848 39576860
    912557 8yiv:E (2.101) BS01 peptide N/A N/A P0DTU4 39576860
    912558 8yj2:A (2.261) BS01 peptide N/A N/A F6IQR9 39576860
    912559 8yj2:D (2.261) BS01 peptide N/A N/A P01848 39576860
    912560 8yj2:E (2.261) BS01 peptide N/A N/A P0DTU4 39576860
    912561 8yj6:C (1.37) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    912562 8yj7:A (2.8) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    912563 8yj7:B (2.8) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    912564 8yj7:C (2.8) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    912565 8yj7:D (2.8) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    912566 8yj8:A (1.65) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    912567 8yj8:B (1.65) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    912568 8yja:A (2.2) BS01 IHP N/A N/A A0A2S3R7M0 39093838
    912569 8yja:B (2.2) BS01 IHP N/A N/A A0A2S3R7M0 39093838
    912570 8yjc:A (1.3) BS01 IHP N/A N/A A0A2S3R7M0 39093838
    912571 8yjh:D (3.68) BS01 dna N/A GO:0000287 ... P39748 39578540
    912572 8yjh:D (3.68) BS02 dna N/A GO:0000287 ... P39748 39578540
    912573 8yjh:D (3.68) BS03 dna N/A GO:0000287 ... P39748 39578540
    912574 8yjh:D (3.68) BS04 dna N/A GO:0000287 ... P39748 39578540
    912575 8yjl:D (3.51) BS01 dna N/A GO:0000287 ... P39748 39578540
    912576 8yjl:D (3.51) BS02 dna N/A GO:0000287 ... P39748 39578540
    912577 8yjl:D (3.51) BS03 dna N/A GO:0000287 ... P39748 39578540
    912578 8yjl:D (3.51) BS04 dna N/A GO:0000287 ... P39748 39578540
    912579 8yjp:A (3.09) BS01 MW9 N/A N/A Q8NFN8 39638804
    912580 8yjp:A (3.09) BS02 MW9 N/A N/A Q8NFN8 39638804
    912581 8yjp:A (3.09) BS03 CLR N/A N/A Q8NFN8 39638804
    912582 8yjp:A (3.09) BS04 CLR N/A N/A Q8NFN8 39638804
    912583 8yjp:A (3.09) BS05 CLR N/A N/A Q8NFN8 39638804
    912584 8yjp:B (3.09) BS01 CLR N/A N/A Q8NFN8 39638804
    912585 8yjp:B (3.09) BS02 CLR N/A N/A Q8NFN8 39638804
    912586 8yjp:B (3.09) BS03 MW9 N/A N/A Q8NFN8 39638804
    912587 8yjp:B (3.09) BS04 MW9 N/A N/A Q8NFN8 39638804
    912588 8yjq:C (3.51) BS01 dna N/A GO:0000122 ... P12004 39578540
    912589 8yjq:D (3.51) BS01 dna N/A GO:0000287 ... P39748 39578540
    912590 8yjq:D (3.51) BS02 dna N/A GO:0000287 ... P39748 39578540
    912591 8yjq:D (3.51) BS03 dna N/A GO:0000287 ... P39748 39578540
    912592 8yjq:D (3.51) BS04 dna N/A GO:0000287 ... P39748 39578540
    912593 8yjr:D (3.51) BS01 dna N/A GO:0000287 ... P39748 39578540
    912594 8yjr:D (3.51) BS02 dna N/A GO:0000287 ... P39748 39578540
    912595 8yjr:D (3.51) BS03 dna N/A GO:0000287 ... P39748 39578540
    912596 8yjr:D (3.51) BS04 dna N/A GO:0000287 ... P39748 39578540
    912597 8yjs:D (3.55) BS01 dna N/A GO:0000287 ... P39748 39578540
    912598 8yjs:D (3.55) BS02 dna N/A GO:0000287 ... P39748 39578540
    912599 8yjs:D (3.55) BS03 dna N/A GO:0000287 ... P39748 39578540
    912600 8yjs:D (3.55) BS04 dna N/A GO:0000287 ... P39748 39578540

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).