SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 4555 4556 4557 4558 4559 4560 4561 4562 4563 4564 4565 4566 4567 4568 4569 4570 4571 4572 4573 4574 4575 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    912801 8yld:D (3.9) BS01 rna N/A GO:0002181 ... P0CX45 N/A
    912802 8yld:D (3.9) BS02 rna N/A GO:0002181 ... P0CX45 N/A
    912803 8yld:E (3.9) BS01 rna N/A GO:0000027 ... P14126 N/A
    912804 8yld:F (3.9) BS01 rna N/A GO:0002181 ... P10664 N/A
    912805 8yld:F (3.9) BS02 rna N/A GO:0002181 ... P10664 N/A
    912806 8yld:G (3.9) BS01 rna N/A GO:0000027 ... P26321 N/A
    912807 8yld:G (3.9) BS02 rna N/A GO:0000027 ... P26321 N/A
    912808 8yld:H (3.9) BS01 rna N/A GO:0000027 ... P05739 N/A
    912809 8yld:I (3.9) BS01 rna N/A GO:0000463 ... P05737 N/A
    912810 8yld:I (3.9) BS02 rna N/A GO:0000463 ... P05737 N/A
    912811 8yld:J (3.9) BS01 rna N/A GO:0000470 ... P17076 N/A
    912812 8yld:J (3.9) BS02 rna N/A GO:0000470 ... P17076 N/A
    912813 8yld:K (3.9) BS01 rna N/A GO:0002181 ... P05738 N/A
    912814 8yld:L (3.9) BS01 rna N/A GO:0000027 ... P41805 N/A
    912815 8yld:L (3.9) BS02 rna N/A GO:0000027 ... P41805 N/A
    912816 8yld:L (3.9) BS03 rna N/A GO:0000027 ... P41805 N/A
    912817 8yld:M (3.9) BS01 rna N/A GO:0000027 ... Q3E757 N/A
    912818 8yld:M (3.9) BS02 rna N/A GO:0000027 ... Q3E757 N/A
    912819 8yld:N (3.9) BS01 rna N/A GO:0002181 ... Q12690 N/A
    912820 8yld:O (3.9) BS01 rna N/A GO:0000027 ... P36105 N/A
    912821 8yld:P (3.9) BS01 rna N/A GO:0002181 ... P05748 N/A
    912822 8yld:P (3.9) BS02 rna N/A GO:0002181 ... P05748 N/A
    912823 8yld:Q (3.9) BS01 rna N/A GO:0000470 ... P26784 N/A
    912824 8yld:R (3.9) BS01 rna N/A GO:0000448 ... P05740 N/A
    912825 8yld:R (3.9) BS02 rna N/A GO:0000448 ... P05740 N/A
    912826 8yld:S (3.9) BS01 rna N/A GO:0002181 ... P0CX49 N/A
    912827 8yld:SA (3.9) BS01 rna N/A GO:0000054 ... P05750 N/A
    912828 8yld:SB (3.9) BS01 rna N/A GO:0000028 ... P26783 N/A
    912829 8yld:SC (3.9) BS01 rna N/A N/A Q08745 N/A
    912830 8yld:SD (3.9) BS01 rna N/A N/A P48589 N/A
    912831 8yld:SE (3.9) BS01 rna N/A N/A Q01855 N/A
    912832 8yld:SF (3.9) BS01 rna N/A GO:0000462 ... P0CX51 N/A
    912833 8yld:SG (3.9) BS01 rna N/A N/A P02407 N/A
    912834 8yld:SH (3.9) BS01 rna N/A GO:0000054 ... P0CX55 N/A
    912835 8yld:SI (3.9) BS01 rna N/A GO:0000028 ... P07280 N/A
    912836 8yld:SJ (3.9) BS01 rna N/A N/A P38701 N/A
    912837 8yld:SK (3.9) BS01 rna N/A GO:0002181 ... Q3E792 N/A
    912838 8yld:SL (3.9) BS01 rna N/A GO:0000028 ... Q3E7X9 N/A
    912839 8yld:SM (3.9) BS01 rna N/A GO:0002181 ... P41057 N/A
    912840 8yld:SN (3.9) BS01 rna N/A N/A P05759 N/A
    912841 8yld:SO (3.9) BS01 rna N/A GO:0001965 ... P38011 N/A
    912842 8yld:SP (3.9) BS01 rna N/A N/A P32905 N/A
    912843 8yld:SQ (3.9) BS01 rna N/A GO:0000462 ... P33442 N/A
    912844 8yld:SQ (3.9) BS02 rna N/A GO:0000462 ... P33442 N/A
    912845 8yld:SR (3.9) BS01 rna N/A N/A P25443 N/A
    912846 8yld:SS (3.9) BS01 rna N/A GO:0002181 ... P0CX35 N/A
    912847 8yld:ST (3.9) BS01 rna N/A GO:0000462 ... P0CX37 N/A
    912848 8yld:SU (3.9) BS01 rna N/A GO:0002181 ... P26786 N/A
    912849 8yld:SV (3.9) BS01 rna N/A GO:0000462 ... P0CX39 N/A
    912850 8yld:SW (3.9) BS01 rna N/A GO:0000462 ... O13516 N/A
    912851 8yld:SX (3.9) BS01 rna N/A GO:0000028 ... P0CX47 N/A
    912852 8yld:SY (3.9) BS01 rna N/A GO:0000462 ... P05756 N/A
    912853 8yld:SY (3.9) BS02 rna N/A GO:0000462 ... P05756 N/A
    912854 8yld:SZ (3.9) BS01 rna N/A GO:0000028 ... P39516 N/A
    912855 8yld:Sb (3.9) BS01 rna N/A GO:0002181 ... P0C0W1 N/A
    912856 8yld:Sc (3.9) BS01 rna N/A GO:0000462 ... P0CX29 N/A
    912857 8yld:Sd (3.9) BS01 rna N/A GO:0000462 ... P0CX31 N/A
    912858 8yld:Se (3.9) BS01 rna N/A N/A P39938 N/A
    912859 8yld:Sf (3.9) BS01 rna N/A GO:0000028 ... P35997 N/A
    912860 8yld:Sg (3.9) BS01 rna N/A GO:0002181 ... P0CX33 N/A
    912861 8yld:T (3.9) BS01 rna N/A GO:0002181 ... P0CX82 N/A
    912862 8yld:T (3.9) BS02 rna N/A GO:0002181 ... P0CX82 N/A
    912863 8yld:U (3.9) BS01 rna N/A GO:0002181 ... P0CX23 N/A
    912864 8yld:U (3.9) BS02 rna N/A GO:0002181 ... P0CX23 N/A
    912865 8yld:V (3.9) BS01 rna N/A GO:0002181 ... Q02753 N/A
    912866 8yld:V (3.9) BS02 rna N/A GO:0002181 ... Q02753 N/A
    912867 8yld:W (3.9) BS01 rna N/A N/A P05749 N/A
    912868 8yld:X (3.9) BS01 rna N/A GO:0002181 ... P0CX41 N/A
    912869 8yld:X (3.9) BS02 rna N/A GO:0002181 ... P0CX41 N/A
    912870 8yld:Y (3.9) BS01 rna N/A N/A P04449 N/A
    912871 8yld:Z (3.9) BS01 rna N/A N/A P04456 N/A
    912872 8yld:Z (3.9) BS02 rna N/A N/A P04456 N/A
    912873 8yld:a (3.9) BS01 rna N/A GO:0002181 ... P05743 N/A
    912874 8yld:a (3.9) BS02 rna N/A GO:0002181 ... P05743 N/A
    912875 8yld:b (3.9) BS01 rna N/A GO:0002181 ... P0C2H6 N/A
    912876 8yld:c (3.9) BS01 rna N/A GO:0002181 ... P02406 N/A
    912877 8yld:d (3.9) BS01 rna N/A GO:0002181 ... P05747 N/A
    912878 8yld:e (3.9) BS01 rna N/A GO:0002181 ... P14120 N/A
    912879 8yld:f (3.9) BS01 rna N/A GO:0002181 ... P0C2H8 N/A
    912880 8yld:g (3.9) BS01 rna N/A GO:0002181 ... P38061 N/A
    912881 8yld:h (3.9) BS01 rna N/A GO:0000027 ... P05744 N/A
    912882 8yld:i (3.9) BS01 rna N/A GO:0002181 ... P87262 N/A
    912883 8yld:j (3.9) BS01 rna N/A GO:0000463 ... P0CX84 N/A
    912884 8yld:j (3.9) BS02 rna N/A GO:0000463 ... P0CX84 N/A
    912885 8yld:k (3.9) BS01 rna N/A GO:0002181 ... P05745 N/A
    912886 8yld:l (3.9) BS01 rna N/A GO:0000448 ... P49166 N/A
    912887 8yld:l (3.9) BS02 rna N/A GO:0000448 ... P49166 N/A
    912888 8yld:m (3.9) BS01 rna N/A GO:0002181 ... P49167 N/A
    912889 8yld:n (3.9) BS01 rna N/A GO:0002181 ... P04650 N/A
    912890 8yld:n (3.9) BS02 rna N/A GO:0002181 ... P04650 N/A
    912891 8yld:o (3.9) BS01 rna N/A N/A P0CH08 N/A
    912892 8yld:q (3.9) BS01 rna N/A GO:0002181 ... P0CX27 N/A
    912893 8yld:q (3.9) BS02 rna N/A GO:0002181 ... P0CX27 N/A
    912894 8yld:r (3.9) BS01 rna N/A GO:0002181 ... P0CX25 N/A
    912895 8yld:v (3.9) BS01 rna N/A GO:0002182 ... P16521 N/A
    912896 8yld:x (3.9) BS01 rna N/A GO:0003746 ... P32324 N/A
    912897 8yld:x (3.9) BS02 rna N/A GO:0003746 ... P32324 N/A
    912898 8yld:x (3.9) BS03 rna N/A GO:0003746 ... P32324 N/A
    912899 8yle:A (1.86) BS01 ACP 3.1.-.-
    5.6.2.4    		 GO:0003676 ... Q14191 N/A
    912900 8yle:A (1.86) BS02 ZN 3.1.-.-
    5.6.2.4    		 GO:0003676 ... Q14191 N/A
    912901 8yle:A (1.86) BS03 ZN 3.1.-.-
    5.6.2.4    		 GO:0003676 ... Q14191 N/A
    912902 8ylg:A (1.8) BS01 dna N/A N/A Q2SVY7 39484741
    912903 8ylg:A (1.8) BS02 dna N/A N/A Q2SVY7 39484741
    912904 8ylg:B (1.8) BS01 dna N/A N/A Q2SVY7 39484741
    912905 8ylg:B (1.8) BS02 dna N/A N/A Q2SVY7 39484741
    912906 8yli:A (2.9) BS01 dna N/A GO:0006355 ... Q6D5K4 39484741
    912907 8yli:A (2.9) BS02 dna N/A GO:0006355 ... Q6D5K4 39484741
    912908 8yli:B (2.9) BS01 dna N/A GO:0006355 ... Q6D5K4 39484741
    912909 8yli:B (2.9) BS02 dna N/A GO:0006355 ... Q6D5K4 39484741
    912910 8ylj:A (2.05) BS01 URC N/A GO:0006355 ... Q6D5K4 39484741
    912911 8ylk:A (2.1) BS01 URC N/A N/A Q2SVY7 39484741
    912912 8yll:A (1.8) BS01 XAN N/A N/A Q2SVY7 39484741
    912913 8ylm:A (1.95) BS01 URC N/A GO:0006355 ... Q9RV71 39484741
    912914 8ylm:A (1.95) BS02 URC N/A GO:0006355 ... Q9RV71 39484741
    912915 8ylm:B (1.95) BS01 URC N/A GO:0006355 ... Q9RV71 39484741
    912916 8ylm:B (1.95) BS02 URC N/A GO:0006355 ... Q9RV71 39484741
    912917 8ylm:C (1.95) BS01 URC N/A GO:0006355 ... Q9RV71 39484741
    912918 8ylm:C (1.95) BS02 URC N/A GO:0006355 ... Q9RV71 39484741
    912919 8ylm:D (1.95) BS01 URC N/A GO:0006355 ... Q9RV71 39484741
    912920 8ylm:D (1.95) BS02 URC N/A GO:0006355 ... Q9RV71 39484741
    912921 8ylr:D (3.9) BS01 rna N/A GO:0002181 ... P0CX45 N/A
    912922 8ylr:D (3.9) BS02 rna N/A GO:0002181 ... P0CX45 N/A
    912923 8ylr:E (3.9) BS01 rna N/A GO:0000027 ... P14126 N/A
    912924 8ylr:F (3.9) BS01 rna N/A GO:0002181 ... P10664 N/A
    912925 8ylr:F (3.9) BS02 rna N/A GO:0002181 ... P10664 N/A
    912926 8ylr:G (3.9) BS01 rna N/A GO:0000027 ... P26321 N/A
    912927 8ylr:G (3.9) BS02 rna N/A GO:0000027 ... P26321 N/A
    912928 8ylr:H (3.9) BS01 rna N/A GO:0000027 ... P05739 N/A
    912929 8ylr:I (3.9) BS01 rna N/A GO:0000463 ... P05737 N/A
    912930 8ylr:I (3.9) BS02 rna N/A GO:0000463 ... P05737 N/A
    912931 8ylr:J (3.9) BS01 rna N/A GO:0000470 ... P17076 N/A
    912932 8ylr:J (3.9) BS02 rna N/A GO:0000470 ... P17076 N/A
    912933 8ylr:K (3.9) BS01 rna N/A GO:0002181 ... P05738 N/A
    912934 8ylr:L (3.9) BS01 rna N/A GO:0000027 ... P41805 N/A
    912935 8ylr:L (3.9) BS02 rna N/A GO:0000027 ... P41805 N/A
    912936 8ylr:L (3.9) BS03 rna N/A GO:0000027 ... P41805 N/A
    912937 8ylr:M (3.9) BS01 rna N/A GO:0000027 ... Q3E757 N/A
    912938 8ylr:M (3.9) BS02 rna N/A GO:0000027 ... Q3E757 N/A
    912939 8ylr:M (3.9) BS03 rna N/A GO:0000027 ... Q3E757 N/A
    912940 8ylr:N (3.9) BS01 rna N/A GO:0002181 ... Q12690 N/A
    912941 8ylr:O (3.9) BS01 rna N/A GO:0000027 ... P36105 N/A
    912942 8ylr:P (3.9) BS01 rna N/A GO:0002181 ... P05748 N/A
    912943 8ylr:P (3.9) BS02 rna N/A GO:0002181 ... P05748 N/A
    912944 8ylr:Q (3.9) BS01 rna N/A GO:0000470 ... P26784 N/A
    912945 8ylr:R (3.9) BS01 rna N/A GO:0000448 ... P05740 N/A
    912946 8ylr:R (3.9) BS02 rna N/A GO:0000448 ... P05740 N/A
    912947 8ylr:S (3.9) BS01 rna N/A GO:0002181 ... P0CX49 N/A
    912948 8ylr:SA (3.9) BS01 rna N/A GO:0000054 ... P05750 N/A
    912949 8ylr:SB (3.9) BS01 rna N/A GO:0000028 ... P26783 N/A
    912950 8ylr:SC (3.9) BS01 rna N/A N/A Q08745 N/A
    912951 8ylr:SD (3.9) BS01 rna N/A N/A P48589 N/A
    912952 8ylr:SE (3.9) BS01 rna N/A N/A Q01855 N/A
    912953 8ylr:SF (3.9) BS01 rna N/A GO:0000462 ... P0CX51 N/A
    912954 8ylr:SF (3.9) BS02 rna N/A GO:0000462 ... P0CX51 N/A
    912955 8ylr:SG (3.9) BS01 rna N/A N/A P02407 N/A
    912956 8ylr:SH (3.9) BS01 rna N/A GO:0000054 ... P0CX55 N/A
    912957 8ylr:SI (3.9) BS01 rna N/A GO:0000028 ... P07280 N/A
    912958 8ylr:SJ (3.9) BS01 rna N/A N/A P38701 N/A
    912959 8ylr:SK (3.9) BS01 rna N/A GO:0002181 ... Q3E792 N/A
    912960 8ylr:SL (3.9) BS01 rna N/A GO:0000028 ... Q3E7X9 N/A
    912961 8ylr:SM (3.9) BS01 rna N/A GO:0002181 ... P41057 N/A
    912962 8ylr:SN (3.9) BS01 rna N/A N/A P05759 N/A
    912963 8ylr:SO (3.9) BS01 rna N/A GO:0001965 ... P38011 N/A
    912964 8ylr:SP (3.9) BS01 rna N/A N/A P32905 N/A
    912965 8ylr:SQ (3.9) BS01 rna N/A GO:0000462 ... P33442 N/A
    912966 8ylr:SR (3.9) BS01 rna N/A N/A P25443 N/A
    912967 8ylr:SS (3.9) BS01 rna N/A GO:0002181 ... P0CX35 N/A
    912968 8ylr:ST (3.9) BS01 rna N/A GO:0000462 ... P0CX37 N/A
    912969 8ylr:SU (3.9) BS01 rna N/A GO:0002181 ... P26786 N/A
    912970 8ylr:SV (3.9) BS01 rna N/A GO:0000462 ... P0CX39 N/A
    912971 8ylr:SV (3.9) BS02 rna N/A GO:0000462 ... P0CX39 N/A
    912972 8ylr:SW (3.9) BS01 rna N/A GO:0000462 ... O13516 N/A
    912973 8ylr:SX (3.9) BS01 rna N/A GO:0000028 ... P0CX47 N/A
    912974 8ylr:SY (3.9) BS01 rna N/A GO:0000462 ... P05756 N/A
    912975 8ylr:SZ (3.9) BS01 rna N/A GO:0000028 ... P39516 N/A
    912976 8ylr:Sa (3.9) BS01 rna N/A GO:0000447 ... P0C0V8 N/A
    912977 8ylr:Sb (3.9) BS01 rna N/A GO:0002181 ... P0C0W1 N/A
    912978 8ylr:Sc (3.9) BS01 rna N/A GO:0000462 ... P0CX29 N/A
    912979 8ylr:Sd (3.9) BS01 rna N/A GO:0000462 ... P0CX31 N/A
    912980 8ylr:Se (3.9) BS01 rna N/A N/A P39938 N/A
    912981 8ylr:Sf (3.9) BS01 rna N/A GO:0000028 ... P35997 N/A
    912982 8ylr:Sg (3.9) BS01 rna N/A GO:0002181 ... P0CX33 N/A
    912983 8ylr:T (3.9) BS01 rna N/A GO:0002181 ... P0CX82 N/A
    912984 8ylr:T (3.9) BS02 rna N/A GO:0002181 ... P0CX82 N/A
    912985 8ylr:U (3.9) BS01 rna N/A GO:0002181 ... P0CX23 N/A
    912986 8ylr:U (3.9) BS02 rna N/A GO:0002181 ... P0CX23 N/A
    912987 8ylr:V (3.9) BS01 rna N/A GO:0002181 ... Q02753 N/A
    912988 8ylr:V (3.9) BS02 rna N/A GO:0002181 ... Q02753 N/A
    912989 8ylr:W (3.9) BS01 rna N/A N/A P05749 N/A
    912990 8ylr:X (3.9) BS01 rna N/A GO:0002181 ... P0CX41 N/A
    912991 8ylr:X (3.9) BS02 rna N/A GO:0002181 ... P0CX41 N/A
    912992 8ylr:Y (3.9) BS01 rna N/A N/A P04449 N/A
    912993 8ylr:Z (3.9) BS01 rna N/A N/A P04456 N/A
    912994 8ylr:Z (3.9) BS02 rna N/A N/A P04456 N/A
    912995 8ylr:a (3.9) BS01 rna N/A GO:0002181 ... P05743 N/A
    912996 8ylr:a (3.9) BS02 rna N/A GO:0002181 ... P05743 N/A
    912997 8ylr:b (3.9) BS01 rna N/A GO:0002181 ... P0C2H6 N/A
    912998 8ylr:c (3.9) BS01 rna N/A GO:0002181 ... P02406 N/A
    912999 8ylr:d (3.9) BS01 rna N/A GO:0002181 ... P05747 N/A
    913000 8ylr:e (3.9) BS01 rna N/A GO:0002181 ... P14120 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).