SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    912801 8wpk:B (2.7) BS01 dna ? GO:0006260 ... A0A7H0DNC0 37995690
    912802 8wpk:C (2.7) BS01 dna 3.2.2.27 GO:0003677 ... M1LL92 37995690
    912803 8wpk:E (2.7) BS01 dna ? GO:0019031 ... A0A7H0DN82 37995690
    912804 8wpl:B (3.04) BS01 Y01 N/A GO:0003254 ... Q9UBN4 39478185
    912805 8wpl:B (3.04) BS02 ZN N/A GO:0003254 ... Q9UBN4 39478185
    912806 8wpl:B (3.04) BS03 CA N/A GO:0003254 ... Q9UBN4 39478185
    912807 8wpl:C (3.04) BS01 Y01 N/A GO:0003254 ... Q9UBN4 39478185
    912808 8wpl:C (3.04) BS02 ZN N/A GO:0003254 ... Q9UBN4 39478185
    912809 8wpl:C (3.04) BS03 CA N/A GO:0003254 ... Q9UBN4 39478185
    912810 8wpl:D (3.04) BS01 Y01 N/A GO:0003254 ... Q9UBN4 39478185
    912811 8wpl:D (3.04) BS02 ZN N/A GO:0003254 ... Q9UBN4 39478185
    912812 8wpl:D (3.04) BS03 CA N/A GO:0003254 ... Q9UBN4 39478185
    912813 8wpm:A (3.43) BS01 PJQ N/A GO:0005102 ... P48995 39478185
    912814 8wpm:A (3.43) BS02 ZN N/A GO:0005102 ... P48995 39478185
    912815 8wpm:A (3.43) BS03 PJQ N/A GO:0005102 ... P48995 39478185
    912816 8wpm:B (3.43) BS01 PJQ N/A GO:0003254 ... Q9UBN4 39478185
    912817 8wpm:B (3.43) BS02 ZN N/A GO:0003254 ... Q9UBN4 39478185
    912818 8wpm:B (3.43) BS03 CA N/A GO:0003254 ... Q9UBN4 39478185
    912819 8wpm:B (3.43) BS04 PJQ N/A GO:0003254 ... Q9UBN4 39478185
    912820 8wpm:C (3.43) BS01 PJQ N/A GO:0003254 ... Q9UBN4 39478185
    912821 8wpm:C (3.43) BS02 ZN N/A GO:0003254 ... Q9UBN4 39478185
    912822 8wpm:C (3.43) BS03 CA N/A GO:0003254 ... Q9UBN4 39478185
    912823 8wpm:D (3.43) BS01 PJQ N/A GO:0003254 ... Q9UBN4 39478185
    912824 8wpm:D (3.43) BS02 PJQ N/A GO:0003254 ... Q9UBN4 39478185
    912825 8wpm:D (3.43) BS03 ZN N/A GO:0003254 ... Q9UBN4 39478185
    912826 8wpm:D (3.43) BS04 CA N/A GO:0003254 ... Q9UBN4 39478185
    912827 8wpn:A (2.82) BS01 Y01 N/A GO:0003254 ... Q9UBN4 39478185
    912828 8wpn:A (2.82) BS02 ZN N/A GO:0003254 ... Q9UBN4 39478185
    912829 8wpn:A (2.82) BS03 CA N/A GO:0003254 ... Q9UBN4 39478185
    912830 8wpn:B (2.82) BS01 Y01 N/A GO:0003254 ... Q9UBN4 39478185
    912831 8wpn:B (2.82) BS02 ZN N/A GO:0003254 ... Q9UBN4 39478185
    912832 8wpn:B (2.82) BS03 CA N/A GO:0003254 ... Q9UBN4 39478185
    912833 8wpn:C (2.82) BS01 Y01 N/A GO:0003254 ... Q9UBN4 39478185
    912834 8wpn:C (2.82) BS02 ZN N/A GO:0003254 ... Q9UBN4 39478185
    912835 8wpn:C (2.82) BS03 CA N/A GO:0003254 ... Q9UBN4 39478185
    912836 8wpn:D (2.82) BS01 Y01 N/A GO:0003254 ... Q9UBN4 39478185
    912837 8wpn:D (2.82) BS02 ZN N/A GO:0003254 ... Q9UBN4 39478185
    912838 8wpn:D (2.82) BS03 CA N/A GO:0003254 ... Q9UBN4 39478185
    912839 8wpo:A (2.1) BS01 NAD N/A GO:0016616 ... Q7WRR2 40195441
    912840 8wpo:A (2.1) BS02 NAP N/A GO:0016616 ... Q7WRR2 40195441
    912841 8wpo:A (2.1) BS03 FLC N/A GO:0016616 ... Q7WRR2 40195441
    912842 8wpp:A (3.1) BS01 dna 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    912843 8wpp:A (3.1) BS02 dna 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    912844 8wpp:B (3.1) BS01 dna ? GO:0006260 ... A0A7H0DNC0 37995690
    912845 8wpp:C (3.1) BS01 dna 3.2.2.27 GO:0003677 ... M1LL92 37995690
    912846 8wpp:E (3.1) BS01 dna ? GO:0019031 ... A0A7H0DN82 37995690
    912847 8wpp:E (3.1) BS02 dna ? GO:0019031 ... A0A7H0DN82 37995690
    912848 8wpq:A (2.6) BS01 NAD N/A GO:0016616 ... Q7WRR2 40195441
    912849 8wpq:A (2.6) BS02 FLC N/A GO:0016616 ... Q7WRR2 40195441
    912850 8wpr:A (1.7) BS01 NAD N/A GO:0016616 ... Q7WRR2 40195441
    912851 8wps:A (1.9) BS01 NAD N/A GO:0016616 ... Q7WRR2 40195441
    912852 8wpu:A (3.1) BS01 TRP ? GO:0004930 ... P41180 37919470
    912853 8wpu:A (3.1) BS02 CA ? GO:0004930 ... P41180 37919470
    912854 8wpu:A (3.1) BS03 YP4 ? GO:0004930 ... P41180 37919470
    912855 8wpu:B (3.1) BS01 YP4 ? GO:0004930 ... P41180 37919470
    912856 8wpu:B (3.1) BS02 TRP ? GO:0004930 ... P41180 37919470
    912857 8wpu:B (3.1) BS03 CA ? GO:0004930 ... P41180 37919470
    912858 8wpu:B (3.1) BS04 CLR ? GO:0004930 ... P41180 37919470
    912859 8wpv:A (2.059) BS01 FE N/A GO:0008199 ... A0A084EX36 38641862
    912860 8wpv:A (2.059) BS02 FE N/A GO:0008199 ... A0A084EX36 38641862
    912861 8wpv:A (2.059) BS03 FE N/A GO:0008199 ... A0A084EX36 38641862
    912862 8wpv:A (2.059) BS04 FE N/A GO:0008199 ... A0A084EX36 38641862
    912863 8wq2:AS2P (4.1) BS01 rna ? GO:0003735 ... P39478 38599770
    912864 8wq2:AS2P (4.1) BS02 UNK ? GO:0003735 ... P39478 38599770
    912865 8wq2:AS2P (4.1) BS03 UNK ? GO:0003735 ... P39478 38599770
    912866 8wq2:AS2P (4.1) BS04 UNK ? GO:0003735 ... P39478 38599770
    912867 8wq2:AS3P (4.1) BS01 rna ? GO:0003676 ... Q4JB46 38599770
    912868 8wq2:AS4E (4.1) BS01 rna ? GO:0003723 ... O05634 38599770
    912869 8wq2:AS4P (4.1) BS01 rna ? GO:0003723 ... P39467 38599770
    912870 8wq2:AS5P (4.1) BS01 rna ? GO:0003723 ... O05641 38599770
    912871 8wq2:AS5P (4.1) BS02 UNK ? GO:0003723 ... O05641 38599770
    912872 8wq2:AS5P (4.1) BS03 UNK ? GO:0003723 ... O05641 38599770
    912873 8wq2:AS6E (4.1) BS01 rna ? GO:0003735 ... Q4JAI1 38599770
    912874 8wq2:AS7P (4.1) BS01 rna ? GO:0003723 ... P17198 38599770
    912875 8wq2:AS8E (4.1) BS01 rna ? GO:0003735 ... Q4JAP5 38599770
    912876 8wq2:AS8P (4.1) BS01 rna ? GO:0003735 ... O05636 38599770
    912877 8wq2:AS9P (4.1) BS01 rna ? GO:0000462 ... P39468 38599770
    912878 8wq2:S10P (4.1) BS01 rna ? GO:0000049 ... P17199 38599770
    912879 8wq2:S11P (4.1) BS01 rna ? GO:0003735 ... P39469 38599770
    912880 8wq2:S12P (4.1) BS01 rna ? GO:0003735 ... P11524 38599770
    912881 8wq2:S12P (4.1) BS02 rna ? GO:0003735 ... P11524 38599770
    912882 8wq2:S13P (4.1) BS01 rna ? GO:0003676 ... P39470 38599770
    912883 8wq2:S14P (4.1) BS01 rna ? GO:0002181 ... O05635 38599770
    912884 8wq2:S15P (4.1) BS01 rna ? GO:0003735 ... Q4JAI3 38599770
    912885 8wq2:S17E (4.1) BS01 rna ? GO:0003735 ... Q4JAX5 38599770
    912886 8wq2:S17P (4.1) BS01 rna ? GO:0003735 ... Q4JB49 38599770
    912887 8wq2:S19E (4.1) BS01 rna ? GO:0000028 ... Q4J8U1 38599770
    912888 8wq2:S19P (4.1) BS01 rna ? GO:0003723 ... Q4JB44 38599770
    912889 8wq2:S24E (4.1) BS01 rna ? GO:0003735 ... Q4JAF9 38599770
    912890 8wq2:S27A (4.1) BS01 rna ? GO:0003735 ... Q4JAG0 38599770
    912891 8wq2:S27E (4.1) BS01 rna ? GO:0003735 ... Q4J9B1 38599770
    912892 8wq2:S28E (4.1) BS01 rna ? GO:0003735 ... Q4JAV1 38599770
    912893 8wq2:S3AE (4.1) BS01 rna ? GO:0003735 ... Q4JB17 38599770
    912894 8wq2:SL7A (4.1) BS01 rna ? GO:0001682 ... Q4J8P1 38599770
    912895 8wq4:AS2P (4.53) BS01 rna ? GO:0003735 ... P39478 38599770
    912896 8wq4:AS3P (4.53) BS01 rna ? GO:0003676 ... Q4JB46 38599770
    912897 8wq4:AS4E (4.53) BS01 rna ? GO:0003723 ... O05634 38599770
    912898 8wq4:AS4P (4.53) BS01 rna ? GO:0003723 ... P39467 38599770
    912899 8wq4:AS5P (4.53) BS01 rna ? GO:0003723 ... O05641 38599770
    912900 8wq4:AS5P (4.53) BS02 UNK ? GO:0003723 ... O05641 38599770
    912901 8wq4:AS5P (4.53) BS03 UNK ? GO:0003723 ... O05641 38599770
    912902 8wq4:AS6E (4.53) BS01 rna ? GO:0003735 ... Q4JAI1 38599770
    912903 8wq4:AS7P (4.53) BS01 rna ? GO:0003723 ... P17198 38599770
    912904 8wq4:AS8E (4.53) BS01 rna ? GO:0003735 ... Q4JAP5 38599770
    912905 8wq4:AS8P (4.53) BS01 rna ? GO:0003735 ... O05636 38599770
    912906 8wq4:AS8P (4.53) BS02 UNK ? GO:0003735 ... O05636 38599770
    912907 8wq4:AS9P (4.53) BS01 rna ? GO:0000462 ... P39468 38599770
    912908 8wq4:S10P (4.53) BS01 rna ? GO:0000049 ... P17199 38599770
    912909 8wq4:S11P (4.53) BS01 rna ? GO:0003735 ... P39469 38599770
    912910 8wq4:S12P (4.53) BS01 rna ? GO:0003735 ... P11524 38599770
    912911 8wq4:S12P (4.53) BS02 rna ? GO:0003735 ... P11524 38599770
    912912 8wq4:S13P (4.53) BS01 rna ? GO:0003676 ... P39470 38599770
    912913 8wq4:S14P (4.53) BS01 rna ? GO:0002181 ... O05635 38599770
    912914 8wq4:S15P (4.53) BS01 rna ? GO:0003735 ... Q4JAI3 38599770
    912915 8wq4:S17E (4.53) BS01 rna ? GO:0003735 ... Q4JAX5 38599770
    912916 8wq4:S17P (4.53) BS01 rna ? GO:0003735 ... Q4JB49 38599770
    912917 8wq4:S19E (4.53) BS01 rna ? GO:0000028 ... Q4J8U1 38599770
    912918 8wq4:S19P (4.53) BS01 rna ? GO:0003723 ... Q4JB44 38599770
    912919 8wq4:S24E (4.53) BS01 rna ? GO:0003735 ... Q4JAF9 38599770
    912920 8wq4:S27A (4.53) BS01 rna ? GO:0003735 ... Q4JAG0 38599770
    912921 8wq4:S27E (4.53) BS01 rna ? GO:0003735 ... Q4J9B1 38599770
    912922 8wq4:S3AE (4.53) BS01 rna ? GO:0003735 ... Q4JB17 38599770
    912923 8wq4:SL7A (4.53) BS01 rna ? GO:0001682 ... Q4J8P1 38599770
    912924 8wq5:A (1.65) BS01 dna N/A GO:0003676 ... Q8IUH3 39122006
    912925 8wq5:B (1.65) BS01 dna N/A GO:0003676 ... Q8IUH3 39122006
    912926 8wq5:C (1.65) BS01 dna N/A GO:0003676 ... Q8IUH3 39122006
    912927 8wq5:D (1.65) BS01 dna N/A GO:0003676 ... Q8IUH3 39122006
    912928 8wq6:A (1.55) BS01 ZN N/A GO:0004866 ... A0A6P5Y0V4 39565068
    912929 8wq6:A (1.55) BS02 ZN N/A GO:0004866 ... A0A6P5Y0V4 39565068
    912930 8wq6:B (1.55) BS01 ZN N/A GO:0004866 ... A0A6P5Y0V4 39565068
    912931 8wq6:B (1.55) BS02 ZN N/A GO:0004866 ... A0A6P5Y0V4 39565068
    912932 8wq9:A (1.97) BS01 ABU 3.5.2.2 GO:0004157 ... Q9I676 38056157
    912933 8wq9:A (1.97) BS02 ABU 3.5.2.2 GO:0004157 ... Q9I676 38056157
    912934 8wq9:A (1.97) BS03 ZN 3.5.2.2 GO:0004157 ... Q9I676 38056157
    912935 8wq9:A (1.97) BS04 ZN 3.5.2.2 GO:0004157 ... Q9I676 38056157
    912936 8wq9:B (1.97) BS01 ABU 3.5.2.2 GO:0004157 ... Q9I676 38056157
    912937 8wq9:B (1.97) BS02 ABU 3.5.2.2 GO:0004157 ... Q9I676 38056157
    912938 8wq9:B (1.97) BS03 ZN 3.5.2.2 GO:0004157 ... Q9I676 38056157
    912939 8wq9:B (1.97) BS04 ZN 3.5.2.2 GO:0004157 ... Q9I676 38056157
    912940 8wqa:B (3.39) BS01 peptide ? GO:0000151 ... Q9UK73 38670995
    912941 8wqa:D (3.39) BS01 peptide ? GO:0000151 ... Q9UK73 38670995
    912942 8wqa:I (3.39) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912943 8wqa:I (3.39) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912944 8wqa:I (3.39) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912945 8wqa:J (3.39) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912946 8wqa:J (3.39) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912947 8wqb:E (3.37) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912948 8wqb:E (3.37) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912949 8wqb:E (3.37) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912950 8wqb:I (3.37) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912951 8wqb:I (3.37) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912952 8wqb:I (3.37) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912953 8wqb:J (3.37) BS01 peptide ? GO:0000151 ... Q9UK73 38670995
    912954 8wqc:F (3.54) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912955 8wqc:F (3.54) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912956 8wqc:F (3.54) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912957 8wqc:J (3.54) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912958 8wqc:J (3.54) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912959 8wqc:J (3.54) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912960 8wqd:D (3.55) BS01 peptide ? GO:0000151 ... Q9UK73 38670995
    912961 8wqe:B (3.38) BS01 peptide ? GO:0000151 ... Q9UK73 38670995
    912962 8wqe:I (3.38) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912963 8wqe:I (3.38) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912964 8wqe:I (3.38) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912965 8wqe:J (3.38) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912966 8wqe:J (3.38) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912967 8wqe:J (3.38) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912968 8wqf:E (3.27) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912969 8wqf:E (3.27) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912970 8wqf:E (3.27) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912971 8wqf:I (3.27) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912972 8wqf:I (3.27) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912973 8wqf:I (3.27) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912974 8wqf:J (3.27) BS01 peptide ? GO:0000151 ... Q9UK73 38670995
    912975 8wqg:F (4.09) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912976 8wqg:F (4.09) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912977 8wqg:F (4.09) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912978 8wqg:J (4.09) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912979 8wqg:J (4.09) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912980 8wqg:J (4.09) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912981 8wqh:B (3.44) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912982 8wqh:B (3.44) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912983 8wqh:B (3.44) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912984 8wqh:D (3.44) BS01 peptide ? GO:0000151 ... Q9UK73 38670995
    912985 8wqh:H (3.44) BS01 peptide ? GO:0000151 ... Q9UK73 38670995
    912986 8wqh:J (3.44) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912987 8wqh:J (3.44) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912988 8wqh:J (3.44) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    912989 8wqi:D (3.5) BS01 peptide ? GO:0000151 ... Q9UK73 38670995
    912990 8wqj:A (2.14) BS01 PLP N/A GO:0005829 ... A0A0P1EM06 N/A
    912991 8wqj:A (2.14) BS02 PLP N/A GO:0005829 ... A0A0P1EM06 N/A
    912992 8wqj:B (2.14) BS01 PLP N/A GO:0005829 ... A0A0P1EM06 N/A
    912993 8wqj:B (2.14) BS02 PLP N/A GO:0005829 ... A0A0P1EM06 N/A
    912994 8wql:A1 (3.5) BS01 peptide N/A GO:0009055 ... N/A 39169020
    912995 8wql:A1 (3.5) BS02 OEX N/A GO:0009055 ... N/A 39169020
    912996 8wql:A1 (3.5) BS03 CLA N/A GO:0009055 ... N/A 39169020
    912997 8wql:A1 (3.5) BS04 CLA N/A GO:0009055 ... N/A 39169020
    912998 8wql:A1 (3.5) BS05 BCT N/A GO:0009055 ... N/A 39169020
    912999 8wql:A1 (3.5) BS06 PHO N/A GO:0009055 ... N/A 39169020
    913000 8wql:A1 (3.5) BS07 CLA N/A GO:0009055 ... N/A 39169020
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).