SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    913001 8ylr:f (3.9) BS01 rna N/A GO:0002181 ... P0C2H8 N/A
    913002 8ylr:g (3.9) BS01 rna N/A GO:0002181 ... P38061 N/A
    913003 8ylr:h (3.9) BS01 rna N/A GO:0000027 ... P05744 N/A
    913004 8ylr:i (3.9) BS01 rna N/A GO:0002181 ... P87262 N/A
    913005 8ylr:j (3.9) BS01 rna N/A GO:0000463 ... P0CX84 N/A
    913006 8ylr:j (3.9) BS02 rna N/A GO:0000463 ... P0CX84 N/A
    913007 8ylr:k (3.9) BS01 rna N/A GO:0002181 ... P05745 N/A
    913008 8ylr:l (3.9) BS01 rna N/A GO:0000448 ... P49166 N/A
    913009 8ylr:l (3.9) BS02 rna N/A GO:0000448 ... P49166 N/A
    913010 8ylr:m (3.9) BS01 rna N/A GO:0002181 ... P49167 N/A
    913011 8ylr:n (3.9) BS01 rna N/A GO:0002181 ... P04650 N/A
    913012 8ylr:n (3.9) BS02 rna N/A GO:0002181 ... P04650 N/A
    913013 8ylr:o (3.9) BS01 rna N/A N/A P0CH08 N/A
    913014 8ylr:q (3.9) BS01 rna N/A GO:0002181 ... P0CX27 N/A
    913015 8ylr:q (3.9) BS02 rna N/A GO:0002181 ... P0CX27 N/A
    913016 8ylr:r (3.9) BS01 rna N/A GO:0002181 ... P0CX25 N/A
    913017 8ylr:v (3.9) BS01 rna N/A GO:0002182 ... P16521 N/A
    913018 8ylr:x (3.9) BS01 rna N/A GO:0003746 ... P32324 N/A
    913019 8ylr:x (3.9) BS02 rna N/A GO:0003746 ... P32324 N/A
    913020 8ylr:x (3.9) BS03 rna N/A GO:0003746 ... P32324 N/A
    913021 8yls:A (1.93) BS01 A1LYZ N/A GO:0008233 ... P0DTC1 N/A
    913022 8ylt:A (3.09) BS01 NAD N/A N/A D4G637 39059542
    913023 8ylt:B (3.09) BS01 NAD N/A N/A D4G637 39059542
    913024 8ylt:C (3.09) BS01 NAD N/A N/A D4G637 39059542
    913025 8ylt:D (3.09) BS01 NAD N/A N/A D4G637 39059542
    913026 8ylu:A (2.8) BS01 dna N/A GO:0000819 ... P07065 N/A
    913027 8ylu:A (2.8) BS02 dna N/A GO:0000819 ... P07065 N/A
    913028 8ylu:B (2.8) BS01 dna N/A GO:0000819 ... P07065 N/A
    913029 8ylu:B (2.8) BS02 dna N/A GO:0000819 ... P07065 N/A
    913030 8ylu:C (2.8) BS01 dna N/A GO:0000819 ... A0A346FJ89 N/A
    913031 8ylu:C (2.8) BS02 dna N/A GO:0000819 ... A0A346FJ89 N/A
    913032 8ylu:D (2.8) BS01 dna N/A GO:0000819 ... A0A346FJ89 N/A
    913033 8ylu:D (2.8) BS02 dna N/A GO:0000819 ... A0A346FJ89 N/A
    913034 8ym2:A (2.0) BS01 peptide ? N/A Q8BIZ1 38759928
    913035 8ym7:A (2.83) BS01 FAD 1.14.99.66 GO:0005634 ... O60341 N/A
    913036 8ym7:A (2.83) BS02 A1LZJ 1.14.99.66 GO:0005634 ... O60341 N/A
    913037 8ymb:A (2.95) BS01 A1LY0 N/A N/A O60885 39735913
    913038 8ymb:D (2.95) BS01 A1LY0 N/A N/A P40337 39735913
    913039 8ymb:F (2.95) BS01 A1LY0 N/A N/A O60885 39735913
    913040 8ymb:I (2.95) BS01 A1LY0 N/A N/A P40337 39735913
    913041 8ymd:A (1.08) BS01 GLC N/A N/A P17931 39227094
    913042 8ymd:A (1.08) BS02 GLA N/A N/A P17931 39227094
    913043 8ymz:E (2.95) BS01 dna N/A N/A O43298 39344089
    913044 8ymz:E (2.95) BS02 dna N/A N/A O43298 39344089
    913045 8ymz:E (2.95) BS03 ZN N/A N/A O43298 39344089
    913046 8ymz:E (2.95) BS04 ZN N/A N/A O43298 39344089
    913047 8ymz:E (2.95) BS05 ZN N/A N/A O43298 39344089
    913048 8ymz:F (2.95) BS01 dna N/A N/A O43298 39344089
    913049 8ymz:F (2.95) BS02 dna N/A N/A O43298 39344089
    913050 8ymz:F (2.95) BS03 ZN N/A N/A O43298 39344089
    913051 8ymz:F (2.95) BS04 ZN N/A N/A O43298 39344089
    913052 8yn0:A (2.49) BS01 ATP N/A N/A N/A N/A
    913053 8yn0:A (2.49) BS02 APR N/A N/A N/A N/A
    913054 8yn0:B (2.49) BS01 APR N/A N/A N/A N/A
    913055 8yn0:B (2.49) BS02 ATP N/A N/A N/A N/A
    913056 8yn0:C (2.49) BS01 ATP N/A N/A N/A N/A
    913057 8yn0:C (2.49) BS02 APR N/A N/A N/A N/A
    913058 8yn0:E (2.49) BS01 APR N/A N/A N/A N/A
    913059 8yn0:E (2.49) BS02 ATP N/A N/A N/A N/A
    913060 8yn1:A (3.09) BS01 APR N/A N/A N/A N/A
    913061 8yn1:A (3.09) BS02 ATP N/A N/A N/A N/A
    913062 8yn1:B (3.09) BS01 APR N/A N/A N/A N/A
    913063 8yn1:B (3.09) BS02 ATP N/A N/A N/A N/A
    913064 8yn2:R (2.66) BS01 HSM N/A GO:0004930 ... P35367 39333117
    913065 8yn2:R (2.66) BS02 CLR N/A GO:0004930 ... P35367 39333117
    913066 8yn2:R (2.66) BS03 CLR N/A GO:0004930 ... P35367 39333117
    913067 8yn2:R (2.66) BS04 CLR N/A GO:0004930 ... P35367 39333117
    913068 8yn2:R (2.66) BS05 CLR N/A GO:0004930 ... P35367 39333117
    913069 8yn3:R (2.56) BS01 HSM N/A N/A P25021 39333117
    913070 8yn3:R (2.56) BS02 CLR N/A N/A P25021 39333117
    913071 8yn4:R (2.97) BS01 HSM N/A N/A P25021 39333117
    913072 8yn4:R (2.97) BS02 CLR N/A N/A P25021 39333117
    913073 8yn5:R (2.7) BS01 HSM N/A GO:0004930 ... Q9Y5N1 39333117
    913074 8yn5:R (2.7) BS02 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    913075 8yn5:R (2.7) BS03 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    913076 8yn5:R (2.7) BS04 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    913077 8yn5:R (2.7) BS05 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    913078 8yn5:R (2.7) BS06 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    913079 8yn6:R (2.77) BS01 ITF N/A GO:0004930 ... Q9Y5N1 39333117
    913080 8yn6:R (2.77) BS02 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    913081 8yn6:R (2.77) BS03 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    913082 8yn6:R (2.77) BS04 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    913083 8yn6:R (2.77) BS05 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    913084 8yn6:R (2.77) BS06 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    913085 8yn7:R (2.77) BS01 A1LY2 N/A GO:0004930 ... Q9Y5N1 39333117
    913086 8yn7:R (2.77) BS02 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    913087 8yn7:R (2.77) BS03 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    913088 8yn7:R (2.77) BS04 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    913089 8yn7:R (2.77) BS05 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    913090 8yn8:R (2.77) BS01 A1LY3 N/A GO:0004930 ... Q9Y5N1 39333117
    913091 8yn8:R (2.77) BS02 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    913092 8yn8:R (2.77) BS03 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    913093 8yn8:R (2.77) BS04 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    913094 8yn9:R (2.3) BS01 HSM N/A GO:0004930 ... Q9H3N8 39333117
    913095 8yn9:R (2.3) BS02 CLR N/A GO:0004930 ... Q9H3N8 39333117
    913096 8yn9:R (2.3) BS03 CLR N/A GO:0004930 ... Q9H3N8 39333117
    913097 8yn9:R (2.3) BS04 CLR N/A GO:0004930 ... Q9H3N8 39333117
    913098 8yn9:R (2.3) BS05 CLR N/A GO:0004930 ... Q9H3N8 39333117
    913099 8yn9:R (2.3) BS06 CLR N/A GO:0004930 ... Q9H3N8 39333117
    913100 8yn9:R (2.3) BS07 CLR N/A GO:0004930 ... Q9H3N8 39333117
    913101 8yn9:R (2.3) BS08 CLR N/A GO:0004930 ... Q9H3N8 39333117
    913102 8yna:R (2.63) BS01 A1LY4 N/A GO:0004930 ... Q9H3N8 39333117
    913103 8yna:R (2.63) BS02 CLR N/A GO:0004930 ... Q9H3N8 39333117
    913104 8yna:R (2.63) BS03 CLR N/A GO:0004930 ... Q9H3N8 39333117
    913105 8yna:R (2.63) BS04 CLR N/A GO:0004930 ... Q9H3N8 39333117
    913106 8yna:R (2.63) BS05 CLR N/A GO:0004930 ... Q9H3N8 39333117
    913107 8yna:R (2.63) BS06 CLR N/A GO:0004930 ... Q9H3N8 39333117
    913108 8yna:R (2.63) BS07 CLR N/A GO:0004930 ... Q9H3N8 39333117
    913109 8yna:R (2.63) BS08 CLR N/A GO:0004930 ... Q9H3N8 39333117
    913110 8ynq:A (2.45) BS01 ADP N/A N/A N/A N/A
    913111 8ynq:C (2.45) BS01 ANP N/A N/A N/A N/A
    913112 8ynq:C (2.45) BS02 ANP N/A N/A N/A N/A
    913113 8ynq:D (2.45) BS01 AMP N/A N/A N/A N/A
    913114 8ynr:A (1.8) BS01 GNP N/A N/A Q9ULC3 39615683
    913115 8ynr:A (1.8) BS02 MG N/A N/A Q9ULC3 39615683
    913116 8yns:R (3.33) BS01 A1D6T N/A N/A A0A2R9AFP0
    P0ABE7
    39616153
    913117 8ynt:R (3.43) BS01 A1D6T N/A N/A A0A2R9AFP0
    P0ABE7
    Q99705
    39616153
    913118 8yny:A (4.52) BS01 dna N/A N/A P68431 39737984
    913119 8yny:A (4.52) BS02 dna N/A N/A P68431 39737984
    913120 8yny:B (4.52) BS01 dna N/A N/A P62805 39737984
    913121 8yny:B (4.52) BS02 dna N/A N/A P62805 39737984
    913122 8yny:C (4.52) BS01 dna N/A N/A P04908 39737984
    913123 8yny:C (4.52) BS02 dna N/A N/A P04908 39737984
    913124 8yny:D (4.52) BS01 dna N/A N/A P06899 39737984
    913125 8yny:E (4.52) BS01 dna N/A N/A P68431 39737984
    913126 8yny:E (4.52) BS02 dna N/A N/A P68431 39737984
    913127 8yny:F (4.52) BS01 dna N/A N/A P62805 39737984
    913128 8yny:F (4.52) BS02 dna N/A N/A P62805 39737984
    913129 8yny:G (4.52) BS01 dna N/A N/A P04908 39737984
    913130 8yny:G (4.52) BS02 dna N/A N/A P04908 39737984
    913131 8yny:H (4.52) BS01 dna N/A N/A P06899 39737984
    913132 8yny:H (4.52) BS02 dna N/A N/A P06899 39737984
    913133 8yny:X (4.52) BS01 dna N/A N/A Q99ZW2 39737984
    913134 8yny:X (4.52) BS02 dna N/A N/A Q99ZW2 39737984
    913135 8yny:X (4.52) BS03 dna N/A N/A Q99ZW2 39737984
    913136 8yny:X (4.52) BS04 rna N/A N/A Q99ZW2 39737984
    913137 8ynz:A (3.41) BS01 A1AQR N/A GO:0005886 ... P9WJY5 39441632
    913138 8ynz:B (3.41) BS01 A1AQR N/A GO:0005886 ... P9WJY5 39441632
    913139 8yo0:A (1.3) BS01 GDP N/A N/A Q9ULC3 39615683
    913140 8yo1:C (3.55) BS01 ANP N/A GO:0000819 ... A0A346FJ89 N/A
    913141 8yo1:D (3.55) BS01 ANP N/A GO:0000819 ... A0A346FJ89 N/A
    913142 8yo4:A (3.2) BS01 dna N/A GO:0000819 ... P07065 N/A
    913143 8yo4:A (3.2) BS02 dna N/A GO:0000819 ... P07065 N/A
    913144 8yo4:B (3.2) BS01 dna N/A GO:0000819 ... P07065 N/A
    913145 8yo4:B (3.2) BS02 dna N/A GO:0000819 ... P07065 N/A
    913146 8yo4:C (3.2) BS01 dna N/A GO:0000819 ... P09176 N/A
    913147 8yo4:C (3.2) BS02 dna N/A GO:0000819 ... P09176 N/A
    913148 8yo4:C (3.2) BS03 MG N/A GO:0000819 ... P09176 N/A
    913149 8yo4:D (3.2) BS01 dna N/A GO:0000819 ... P09176 N/A
    913150 8yo4:D (3.2) BS02 dna N/A GO:0000819 ... P09176 N/A
    913151 8yo4:D (3.2) BS03 MG N/A GO:0000819 ... P09176 N/A
    913152 8yo7:A (3.16) BS01 dna N/A GO:0000819 ... P07065 N/A
    913153 8yo7:A (3.16) BS02 dna N/A GO:0000819 ... P07065 N/A
    913154 8yo7:B (3.16) BS01 dna N/A GO:0000819 ... P07065 N/A
    913155 8yo7:B (3.16) BS02 dna N/A GO:0000819 ... P07065 N/A
    913156 8yo7:C (3.16) BS01 dna N/A GO:0000819 ... A0A346FJ89 N/A
    913157 8yo7:C (3.16) BS02 dna N/A GO:0000819 ... A0A346FJ89 N/A
    913158 8yo7:C (3.16) BS03 ASW N/A GO:0000819 ... A0A346FJ89 N/A
    913159 8yo7:D (3.16) BS01 dna N/A GO:0000819 ... A0A346FJ89 N/A
    913160 8yo7:D (3.16) BS02 dna N/A GO:0000819 ... A0A346FJ89 N/A
    913161 8yo7:D (3.16) BS03 ASW N/A GO:0000819 ... A0A346FJ89 N/A
    913162 8yo8:A (2.0) BS01 6FA N/A N/A Q9BRQ8 39160155
    913163 8yo8:A (2.0) BS02 NAD N/A N/A Q9BRQ8 39160155
    913164 8yod:C (6.8) BS01 ANP N/A GO:0000819 ... A0A346FJ89 N/A
    913165 8yod:D (6.8) BS01 ANP N/A GO:0000819 ... A0A346FJ89 N/A
    913166 8yon:A (6.73) BS01 dna N/A GO:0000819 ... P07065 N/A
    913167 8yon:A (6.73) BS02 dna N/A GO:0000819 ... P07065 N/A
    913168 8yon:B (6.73) BS01 dna N/A GO:0000819 ... P07065 N/A
    913169 8yon:B (6.73) BS02 dna N/A GO:0000819 ... P07065 N/A
    913170 8yon:C (6.73) BS01 dna N/A GO:0000819 ... A0A346FJ89 N/A
    913171 8yon:C (6.73) BS02 dna N/A GO:0000819 ... A0A346FJ89 N/A
    913172 8yon:C (6.73) BS03 ANP N/A GO:0000819 ... A0A346FJ89 N/A
    913173 8yon:D (6.73) BS01 dna N/A GO:0000819 ... A0A346FJ89 N/A
    913174 8yon:D (6.73) BS02 dna N/A GO:0000819 ... A0A346FJ89 N/A
    913175 8yon:D (6.73) BS03 ANP N/A GO:0000819 ... A0A346FJ89 N/A
    913176 8yoo:LA (2.0) BS01 rna N/A GO:0002181 ... P62917 38942792
    913177 8yoo:LA (2.0) BS02 rna N/A GO:0002181 ... P62917 38942792
    913178 8yoo:LA (2.0) BS03 MG N/A GO:0002181 ... P62917 38942792
    913179 8yoo:LB (2.0) BS01 rna N/A GO:0002181 ... P39023 38942792
    913180 8yoo:LC (2.0) BS01 rna N/A GO:0002181 ... P36578 38942792
    913181 8yoo:LC (2.0) BS02 rna N/A GO:0002181 ... P36578 38942792
    913182 8yoo:LD (2.0) BS01 rna N/A GO:0000027 ... P46777 38942792
    913183 8yoo:LD (2.0) BS02 rna N/A GO:0000027 ... P46777 38942792
    913184 8yoo:LE (2.0) BS01 rna N/A GO:0002181 ... Q02878 38942792
    913185 8yoo:LF (2.0) BS01 rna N/A GO:0000463 ... P18124 38942792
    913186 8yoo:LF (2.0) BS02 rna N/A GO:0000463 ... P18124 38942792
    913187 8yoo:LG (2.0) BS01 rna N/A GO:0000470 ... P62424 38942792
    913188 8yoo:LG (2.0) BS02 rna N/A GO:0000470 ... P62424 38942792
    913189 8yoo:LH (2.0) BS01 rna N/A GO:0002181 ... P32969 38942792
    913190 8yoo:LI (2.0) BS01 rna N/A GO:0000122 ... P27635 38942792
    913191 8yoo:LI (2.0) BS02 rna N/A GO:0000122 ... P27635 38942792
    913192 8yoo:LJ (2.0) BS01 rna N/A GO:0000027 ... P62913 38942792
    913193 8yoo:LJ (2.0) BS02 rna N/A GO:0000027 ... P62913 38942792
    913194 8yoo:LL (2.0) BS01 rna N/A GO:0001824 ... P26373 38942792
    913195 8yoo:LL (2.0) BS02 rna N/A GO:0001824 ... P26373 38942792
    913196 8yoo:LM (2.0) BS01 rna N/A GO:0002181 ... P50914 38942792
    913197 8yoo:LN (2.0) BS01 rna N/A GO:0002181 ... P61313 38942792
    913198 8yoo:LN (2.0) BS02 rna N/A GO:0002181 ... P61313 38942792
    913199 8yoo:LO (2.0) BS01 rna N/A GO:0002181 ... P40429 38942792
    913200 8yoo:LP (2.0) BS01 rna N/A GO:0002181 ... P18621 38942792

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).