SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    913201 8yoo:LP (2.0) BS02 rna N/A GO:0002181 ... P18621 38942792
    913202 8yoo:LQ (2.0) BS01 rna N/A GO:0002181 ... Q07020 38942792
    913203 8yoo:LR (2.0) BS01 rna N/A GO:0002181 ... P84098 38942792
    913204 8yoo:LR (2.0) BS02 rna N/A GO:0002181 ... P84098 38942792
    913205 8yoo:LS (2.0) BS01 rna N/A GO:0002181 ... Q02543 38942792
    913206 8yoo:LS (2.0) BS02 rna N/A GO:0002181 ... Q02543 38942792
    913207 8yoo:LT (2.0) BS01 rna N/A GO:0002181 ... P46778 38942792
    913208 8yoo:LT (2.0) BS02 rna N/A GO:0002181 ... P46778 38942792
    913209 8yoo:LU (2.0) BS01 rna N/A GO:0002181 ... P35268 38942792
    913210 8yoo:LV (2.0) BS01 rna N/A GO:0000122 ... P62829 38942792
    913211 8yoo:LW (2.0) BS01 rna N/A GO:0000027 ... P83731 38942792
    913212 8yoo:LW (2.0) BS02 rna N/A GO:0000027 ... P83731 38942792
    913213 8yoo:LX (2.0) BS01 rna N/A GO:0002181 ... P62750 38942792
    913214 8yoo:LX (2.0) BS02 rna N/A GO:0002181 ... P62750 38942792
    913215 8yoo:LY (2.0) BS01 rna N/A GO:0002181 ... P61254 38942792
    913216 8yoo:LY (2.0) BS02 rna N/A GO:0002181 ... P61254 38942792
    913217 8yoo:LZ (2.0) BS01 rna N/A GO:0002181 ... P61353 38942792
    913218 8yoo:La (2.0) BS01 rna N/A GO:0002181 ... P46776 38942792
    913219 8yoo:Lb (2.0) BS01 rna N/A GO:0002181 ... P47914 38942792
    913220 8yoo:Lc (2.0) BS01 rna N/A GO:0002181 ... P62888 38942792
    913221 8yoo:Ld (2.0) BS01 rna N/A GO:0002181 ... P62899 38942792
    913222 8yoo:Le (2.0) BS01 rna N/A GO:0002181 ... P62910 38942792
    913223 8yoo:Le (2.0) BS02 MG N/A GO:0002181 ... P62910 38942792
    913224 8yoo:Lf (2.0) BS01 rna N/A GO:0000049 ... P18077 38942792
    913225 8yoo:Lg (2.0) BS01 rna N/A GO:0002181 ... P49207 38942792
    913226 8yoo:Lg (2.0) BS02 MG N/A GO:0002181 ... P49207 38942792
    913227 8yoo:Lg (2.0) BS03 ZN N/A GO:0002181 ... P49207 38942792
    913228 8yoo:Lh (2.0) BS01 rna N/A GO:0000463 ... P42766 38942792
    913229 8yoo:Lh (2.0) BS02 rna N/A GO:0000463 ... P42766 38942792
    913230 8yoo:Li (2.0) BS01 rna N/A GO:0002181 ... Q9Y3U8 38942792
    913231 8yoo:Lj (2.0) BS01 rna N/A GO:0002181 ... P61927 38942792
    913232 8yoo:Lj (2.0) BS02 rna N/A GO:0002181 ... P61927 38942792
    913233 8yoo:Lj (2.0) BS03 ZN N/A GO:0002181 ... P61927 38942792
    913234 8yoo:Lk (2.0) BS01 rna N/A GO:0001501 ... P63173 38942792
    913235 8yoo:Ll (2.0) BS01 rna N/A GO:0002181 ... P62891 38942792
    913236 8yoo:Ll (2.0) BS02 rna N/A GO:0002181 ... P62891 38942792
    913237 8yoo:Lm (2.0) BS01 rna N/A GO:0002181 ... P62987 38942792
    913238 8yoo:Lm (2.0) BS02 ZN N/A GO:0002181 ... P62987 38942792
    913239 8yoo:Lo (2.0) BS01 rna N/A GO:0002181 ... P83881 38942792
    913240 8yoo:Lo (2.0) BS02 ZN N/A GO:0002181 ... P83881 38942792
    913241 8yoo:Lp (2.0) BS01 rna N/A GO:0002181 ... P61513 38942792
    913242 8yoo:Lp (2.0) BS02 ZN N/A GO:0002181 ... P61513 38942792
    913243 8yoo:Lr (2.0) BS01 rna N/A GO:0002181 ... P46779 38942792
    913244 8yoo:Ls (2.0) BS01 rna N/A GO:0002181 ... P05388 38942792
    913245 8yoo:Lt (2.0) BS01 rna N/A GO:0002181 ... P30050 38942792
    913246 8yoo:SA (2.0) BS01 rna N/A GO:0000028 ... P08865 38942792
    913247 8yoo:SB (2.0) BS01 rna N/A GO:0002181 ... P61247 38942792
    913248 8yoo:SC (2.0) BS01 rna N/A GO:0002181 ... P15880 38942792
    913249 8yoo:SD (2.0) BS01 rna N/A GO:0000977 ... P23396 38942792
    913250 8yoo:SE (2.0) BS01 rna N/A GO:0002181 ... P62701 38942792
    913251 8yoo:SF (2.0) BS01 rna N/A GO:0000028 ... P46782 38942792
    913252 8yoo:SG (2.0) BS01 rna N/A GO:0000082 ... P62753 38942792
    913253 8yoo:SH (2.0) BS01 rna N/A GO:0001843 ... P62081 38942792
    913254 8yoo:SI (2.0) BS01 rna N/A GO:0000462 ... P62241 38942792
    913255 8yoo:SI (2.0) BS02 rna N/A GO:0000462 ... P62241 38942792
    913256 8yoo:SJ (2.0) BS01 rna N/A GO:0002181 ... P46781 38942792
    913257 8yoo:SK (2.0) BS01 rna N/A GO:0002181 ... P46783 38942792
    913258 8yoo:SL (2.0) BS01 rna N/A GO:0002181 ... P62280 38942792
    913259 8yoo:SL (2.0) BS02 rna N/A GO:0002181 ... P62280 38942792
    913260 8yoo:SM (2.0) BS01 rna N/A GO:0002181 ... P25398 38942792
    913261 8yoo:SN (2.0) BS01 rna N/A GO:0002181 ... P62277 38942792
    913262 8yoo:SN (2.0) BS02 rna N/A GO:0002181 ... P62277 38942792
    913263 8yoo:SO (2.0) BS01 rna N/A GO:0000028 ... P62263 38942792
    913264 8yoo:SP (2.0) BS01 rna N/A GO:0000028 ... P62841 38942792
    913265 8yoo:SQ (2.0) BS01 rna N/A GO:0000462 ... P62249 38942792
    913266 8yoo:SR (2.0) BS01 rna N/A GO:0002181 ... P08708 38942792
    913267 8yoo:SS (2.0) BS01 rna N/A GO:0002181 ... P62269 38942792
    913268 8yoo:ST (2.0) BS01 rna N/A GO:0000028 ... P39019 38942792
    913269 8yoo:SU (2.0) BS01 rna N/A GO:0002181 ... P60866 38942792
    913270 8yoo:SW (2.0) BS01 rna N/A GO:0002181 ... P62244 38942792
    913271 8yoo:SX (2.0) BS01 rna N/A GO:0002181 ... P62266 38942792
    913272 8yoo:SY (2.0) BS01 rna N/A GO:0002181 ... P62847 38942792
    913273 8yoo:SZ (2.0) BS01 rna N/A GO:0002181 ... P62851 38942792
    913274 8yoo:Sa (2.0) BS01 rna N/A GO:0002181 ... P62854 38942792
    913275 8yoo:Sa (2.0) BS02 ZN N/A GO:0002181 ... P62854 38942792
    913276 8yoo:Sb (2.0) BS01 rna N/A GO:0000028 ... P42677 38942792
    913277 8yoo:Sc (2.0) BS01 rna N/A GO:0000028 ... P62857 38942792
    913278 8yoo:Sd (2.0) BS01 rna N/A GO:0002181 ... P62273 38942792
    913279 8yoo:Sd (2.0) BS02 ZN N/A GO:0002181 ... P62273 38942792
    913280 8yoo:Se (2.0) BS01 rna N/A GO:0003735 ... P62861 38942792
    913281 8yoo:Sf (2.0) BS01 rna N/A GO:0002181 ... P62979 38942792
    913282 8yoo:Sf (2.0) BS02 ZN N/A GO:0002181 ... P62979 38942792
    913283 8yoo:Sg (2.0) BS01 rna N/A GO:0001891 ... P63244 38942792
    913284 8yop:LA (2.2) BS01 rna N/A GO:0002181 ... P62917 38942792
    913285 8yop:LA (2.2) BS02 rna N/A GO:0002181 ... P62917 38942792
    913286 8yop:LA (2.2) BS03 MG N/A GO:0002181 ... P62917 38942792
    913287 8yop:LB (2.2) BS01 rna N/A GO:0002181 ... P39023 38942792
    913288 8yop:LC (2.2) BS01 rna N/A GO:0002181 ... P36578 38942792
    913289 8yop:LC (2.2) BS02 rna N/A GO:0002181 ... P36578 38942792
    913290 8yop:LD (2.2) BS01 rna N/A GO:0000027 ... P46777 38942792
    913291 8yop:LD (2.2) BS02 rna N/A GO:0000027 ... P46777 38942792
    913292 8yop:LE (2.2) BS01 rna N/A GO:0002181 ... Q02878 38942792
    913293 8yop:LF (2.2) BS01 rna N/A GO:0000463 ... P18124 38942792
    913294 8yop:LF (2.2) BS02 rna N/A GO:0000463 ... P18124 38942792
    913295 8yop:LG (2.2) BS01 rna N/A GO:0000470 ... P62424 38942792
    913296 8yop:LG (2.2) BS02 rna N/A GO:0000470 ... P62424 38942792
    913297 8yop:LH (2.2) BS01 rna N/A GO:0002181 ... P32969 38942792
    913298 8yop:LI (2.2) BS01 rna N/A GO:0000122 ... P27635 38942792
    913299 8yop:LI (2.2) BS02 rna N/A GO:0000122 ... P27635 38942792
    913300 8yop:LJ (2.2) BS01 rna N/A GO:0000027 ... P62913 38942792
    913301 8yop:LJ (2.2) BS02 rna N/A GO:0000027 ... P62913 38942792
    913302 8yop:LL (2.2) BS01 rna N/A GO:0001824 ... P26373 38942792
    913303 8yop:LL (2.2) BS02 rna N/A GO:0001824 ... P26373 38942792
    913304 8yop:LM (2.2) BS01 rna N/A GO:0002181 ... P50914 38942792
    913305 8yop:LN (2.2) BS01 rna N/A GO:0002181 ... P61313 38942792
    913306 8yop:LN (2.2) BS02 rna N/A GO:0002181 ... P61313 38942792
    913307 8yop:LO (2.2) BS01 rna N/A GO:0002181 ... P40429 38942792
    913308 8yop:LP (2.2) BS01 rna N/A GO:0002181 ... P18621 38942792
    913309 8yop:LP (2.2) BS02 rna N/A GO:0002181 ... P18621 38942792
    913310 8yop:LQ (2.2) BS01 rna N/A GO:0002181 ... Q07020 38942792
    913311 8yop:LR (2.2) BS01 rna N/A GO:0002181 ... P84098 38942792
    913312 8yop:LR (2.2) BS02 rna N/A GO:0002181 ... P84098 38942792
    913313 8yop:LS (2.2) BS01 rna N/A GO:0002181 ... Q02543 38942792
    913314 8yop:LS (2.2) BS02 rna N/A GO:0002181 ... Q02543 38942792
    913315 8yop:LT (2.2) BS01 rna N/A GO:0002181 ... P46778 38942792
    913316 8yop:LT (2.2) BS02 rna N/A GO:0002181 ... P46778 38942792
    913317 8yop:LU (2.2) BS01 rna N/A GO:0002181 ... P35268 38942792
    913318 8yop:LV (2.2) BS01 rna N/A GO:0000122 ... P62829 38942792
    913319 8yop:LW (2.2) BS01 rna N/A GO:0000027 ... P83731 38942792
    913320 8yop:LW (2.2) BS02 rna N/A GO:0000027 ... P83731 38942792
    913321 8yop:LX (2.2) BS01 rna N/A GO:0002181 ... P62750 38942792
    913322 8yop:LX (2.2) BS02 rna N/A GO:0002181 ... P62750 38942792
    913323 8yop:LY (2.2) BS01 rna N/A GO:0002181 ... P61254 38942792
    913324 8yop:LY (2.2) BS02 rna N/A GO:0002181 ... P61254 38942792
    913325 8yop:LZ (2.2) BS01 rna N/A GO:0002181 ... P61353 38942792
    913326 8yop:La (2.2) BS01 rna N/A GO:0002181 ... P46776 38942792
    913327 8yop:Lb (2.2) BS01 rna N/A GO:0002181 ... P47914 38942792
    913328 8yop:Lc (2.2) BS01 rna N/A GO:0002181 ... P62888 38942792
    913329 8yop:Ld (2.2) BS01 rna N/A GO:0002181 ... P62899 38942792
    913330 8yop:Le (2.2) BS01 rna N/A GO:0002181 ... P62910 38942792
    913331 8yop:Le (2.2) BS02 MG N/A GO:0002181 ... P62910 38942792
    913332 8yop:Lf (2.2) BS01 rna N/A GO:0000049 ... P18077 38942792
    913333 8yop:Lg (2.2) BS01 rna N/A GO:0002181 ... P49207 38942792
    913334 8yop:Lg (2.2) BS02 MG N/A GO:0002181 ... P49207 38942792
    913335 8yop:Lg (2.2) BS03 ZN N/A GO:0002181 ... P49207 38942792
    913336 8yop:Lh (2.2) BS01 rna N/A GO:0000463 ... P42766 38942792
    913337 8yop:Lh (2.2) BS02 rna N/A GO:0000463 ... P42766 38942792
    913338 8yop:Li (2.2) BS01 rna N/A GO:0002181 ... Q9Y3U8 38942792
    913339 8yop:Lj (2.2) BS01 rna N/A GO:0002181 ... P61927 38942792
    913340 8yop:Lj (2.2) BS02 rna N/A GO:0002181 ... P61927 38942792
    913341 8yop:Lj (2.2) BS03 ZN N/A GO:0002181 ... P61927 38942792
    913342 8yop:Lk (2.2) BS01 rna N/A GO:0001501 ... P63173 38942792
    913343 8yop:Ll (2.2) BS01 rna N/A GO:0002181 ... P62891 38942792
    913344 8yop:Ll (2.2) BS02 rna N/A GO:0002181 ... P62891 38942792
    913345 8yop:Lm (2.2) BS01 rna N/A GO:0002181 ... P62987 38942792
    913346 8yop:Lm (2.2) BS02 ZN N/A GO:0002181 ... P62987 38942792
    913347 8yop:Lo (2.2) BS01 rna N/A GO:0002181 ... P83881 38942792
    913348 8yop:Lo (2.2) BS02 ZN N/A GO:0002181 ... P83881 38942792
    913349 8yop:Lp (2.2) BS01 rna N/A GO:0002181 ... P61513 38942792
    913350 8yop:Lp (2.2) BS02 ZN N/A GO:0002181 ... P61513 38942792
    913351 8yop:Lr (2.2) BS01 rna N/A GO:0002181 ... P46779 38942792
    913352 8yop:Ls (2.2) BS01 rna N/A GO:0002181 ... P05388 38942792
    913353 8yop:Lt (2.2) BS01 rna N/A GO:0002181 ... P30050 38942792
    913354 8yop:SA (2.2) BS01 rna N/A GO:0000028 ... P08865 38942792
    913355 8yop:SB (2.2) BS01 rna N/A GO:0002181 ... P61247 38942792
    913356 8yop:SC (2.2) BS01 rna N/A GO:0002181 ... P15880 38942792
    913357 8yop:SD (2.2) BS01 rna N/A GO:0000977 ... P23396 38942792
    913358 8yop:SE (2.2) BS01 rna N/A GO:0002181 ... P62701 38942792
    913359 8yop:SF (2.2) BS01 rna N/A GO:0000028 ... P46782 38942792
    913360 8yop:SG (2.2) BS01 rna N/A GO:0000082 ... P62753 38942792
    913361 8yop:SH (2.2) BS01 rna N/A GO:0001843 ... P62081 38942792
    913362 8yop:SI (2.2) BS01 rna N/A GO:0000462 ... P62241 38942792
    913363 8yop:SI (2.2) BS02 rna N/A GO:0000462 ... P62241 38942792
    913364 8yop:SJ (2.2) BS01 rna N/A GO:0002181 ... P46781 38942792
    913365 8yop:SK (2.2) BS01 rna N/A GO:0002181 ... P46783 38942792
    913366 8yop:SL (2.2) BS01 rna N/A GO:0002181 ... P62280 38942792
    913367 8yop:SL (2.2) BS02 rna N/A GO:0002181 ... P62280 38942792
    913368 8yop:SM (2.2) BS01 rna N/A GO:0002181 ... P25398 38942792
    913369 8yop:SN (2.2) BS01 rna N/A GO:0002181 ... P62277 38942792
    913370 8yop:SN (2.2) BS02 rna N/A GO:0002181 ... P62277 38942792
    913371 8yop:SO (2.2) BS01 rna N/A GO:0000028 ... P62263 38942792
    913372 8yop:SP (2.2) BS01 rna N/A GO:0000028 ... P62841 38942792
    913373 8yop:SQ (2.2) BS01 rna N/A GO:0000462 ... P62249 38942792
    913374 8yop:SR (2.2) BS01 rna N/A GO:0002181 ... P08708 38942792
    913375 8yop:SS (2.2) BS01 rna N/A GO:0002181 ... P62269 38942792
    913376 8yop:ST (2.2) BS01 rna N/A GO:0000028 ... P39019 38942792
    913377 8yop:SU (2.2) BS01 rna N/A GO:0002181 ... P60866 38942792
    913378 8yop:SW (2.2) BS01 rna N/A GO:0002181 ... P62244 38942792
    913379 8yop:SX (2.2) BS01 rna N/A GO:0002181 ... P62266 38942792
    913380 8yop:SY (2.2) BS01 rna N/A GO:0002181 ... P62847 38942792
    913381 8yop:SZ (2.2) BS01 rna N/A GO:0002181 ... P62851 38942792
    913382 8yop:Sa (2.2) BS01 rna N/A GO:0002181 ... P62854 38942792
    913383 8yop:Sa (2.2) BS02 ZN N/A GO:0002181 ... P62854 38942792
    913384 8yop:Sb (2.2) BS01 rna N/A GO:0000028 ... P42677 38942792
    913385 8yop:Sc (2.2) BS01 rna N/A GO:0000028 ... P62857 38942792
    913386 8yop:Sd (2.2) BS01 rna N/A GO:0002181 ... P62273 38942792
    913387 8yop:Sd (2.2) BS02 ZN N/A GO:0002181 ... P62273 38942792
    913388 8yop:Se (2.2) BS01 rna N/A GO:0003735 ... P62861 38942792
    913389 8yop:Sf (2.2) BS01 rna N/A GO:0002181 ... P62979 38942792
    913390 8yop:Sg (2.2) BS01 rna N/A GO:0001891 ... P63244 38942792
    913391 8yoq:A (1.79) BS01 6FA N/A N/A Q9BRQ8 39160155
    913392 8yoq:A (1.79) BS02 NDP N/A N/A Q9BRQ8 39160155
    913393 8you:A (1.8) BS01 SEK ? GO:0046872 ... A0A5C7ETD9 N/A
    913394 8you:A (1.8) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    913395 8you:A (1.8) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    913396 8you:A (1.8) BS04 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    913397 8you:A (1.8) BS05 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    913398 8you:B (1.8) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    913399 8you:B (1.8) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    913400 8you:B (1.8) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).