SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    913601 8ypd:P (2.78) BS01 CRT N/A N/A O82943 39858518
    913602 8ypd:P (2.78) BS02 BCL N/A N/A O82943 39858518
    913603 8ypd:P (2.78) BS03 BCL N/A N/A O82943 39858518
    913604 8ypd:Q (2.78) BS01 CRT N/A N/A N/A 39858518
    913605 8ypd:Q (2.78) BS02 CRT N/A N/A N/A 39858518
    913606 8ypd:Q (2.78) BS03 BCL N/A N/A N/A 39858518
    913607 8ypd:Q (2.78) BS04 BCL N/A N/A N/A 39858518
    913608 8ypd:Q (2.78) BS05 CRT N/A N/A N/A 39858518
    913609 8ypd:R (2.78) BS01 CRT N/A N/A O82943 39858518
    913610 8ypd:R (2.78) BS02 BCL N/A N/A O82943 39858518
    913611 8ypd:R (2.78) BS03 BCL N/A N/A O82943 39858518
    913612 8ypd:S (2.78) BS01 CRT N/A N/A N/A 39858518
    913613 8ypd:S (2.78) BS02 CRT N/A N/A N/A 39858518
    913614 8ypd:S (2.78) BS03 BCL N/A N/A N/A 39858518
    913615 8ypd:S (2.78) BS04 BCL N/A N/A N/A 39858518
    913616 8ypd:S (2.78) BS05 CRT N/A N/A N/A 39858518
    913617 8ypd:T (2.78) BS01 CRT N/A N/A O82943 39858518
    913618 8ypd:T (2.78) BS02 BCL N/A N/A O82943 39858518
    913619 8ypd:T (2.78) BS03 BCL N/A N/A O82943 39858518
    913620 8ypd:U (2.78) BS01 CRT N/A N/A N/A 39858518
    913621 8ypd:U (2.78) BS02 CRT N/A N/A N/A 39858518
    913622 8ypd:U (2.78) BS03 BCL N/A N/A N/A 39858518
    913623 8ypd:U (2.78) BS04 BCL N/A N/A N/A 39858518
    913624 8ypd:U (2.78) BS05 CRT N/A N/A N/A 39858518
    913625 8ypd:V (2.78) BS01 CRT N/A N/A O82943 39858518
    913626 8ypd:V (2.78) BS02 BCL N/A N/A O82943 39858518
    913627 8ypd:V (2.78) BS03 BCL N/A N/A O82943 39858518
    913628 8ypd:W (2.78) BS01 CRT N/A N/A N/A 39858518
    913629 8ypd:W (2.78) BS02 CRT N/A N/A N/A 39858518
    913630 8ypd:W (2.78) BS03 BCL N/A N/A N/A 39858518
    913631 8ypd:W (2.78) BS04 BCL N/A N/A N/A 39858518
    913632 8ypd:W (2.78) BS05 CRT N/A N/A N/A 39858518
    913633 8ypd:X (2.78) BS01 CRT N/A N/A O82943 39858518
    913634 8ypd:X (2.78) BS02 BCL N/A N/A O82943 39858518
    913635 8ypd:X (2.78) BS03 BCL N/A N/A O82943 39858518
    913636 8ypd:Y (2.78) BS01 CRT N/A N/A N/A 39858518
    913637 8ypd:Y (2.78) BS02 CRT N/A N/A N/A 39858518
    913638 8ypd:Y (2.78) BS03 BCL N/A N/A N/A 39858518
    913639 8ypd:Y (2.78) BS04 BCL N/A N/A N/A 39858518
    913640 8ypd:Y (2.78) BS05 CRT N/A N/A N/A 39858518
    913641 8ypd:Z (2.78) BS01 CRT N/A N/A O82943 39858518
    913642 8ypd:Z (2.78) BS02 BCL N/A N/A O82943 39858518
    913643 8ypd:Z (2.78) BS03 BCL N/A N/A O82943 39858518
    913644 8ypd:a (2.78) BS01 CRT N/A N/A N/A 39858518
    913645 8ypd:a (2.78) BS02 CRT N/A N/A N/A 39858518
    913646 8ypd:a (2.78) BS03 BCL N/A N/A N/A 39858518
    913647 8ypd:a (2.78) BS04 CRT N/A N/A N/A 39858518
    913648 8ypd:a (2.78) BS05 BCL N/A N/A N/A 39858518
    913649 8ypd:b (2.78) BS01 BCL N/A N/A O82943 39858518
    913650 8ypd:b (2.78) BS02 BCL N/A N/A O82943 39858518
    913651 8ypd:b (2.78) BS03 CRT N/A N/A O82943 39858518
    913652 8ypk:A (2.7) BS01 A1L0C N/A GO:0004298 ... Q60692 38906067
    913653 8ypk:C (2.7) BS01 A1L0C N/A GO:0004298 ... O55234 38906067
    913654 8ypk:D (2.7) BS01 A1L0C N/A GO:0004298 ... O55234 38906067
    913655 8ypk:F (2.7) BS01 A1L0C N/A GO:0004298 ... Q60692 38906067
    913656 8yq8:A (2.1) BS01 A1LZS N/A GO:0000166 ... D9N170 39026651
    913657 8yq8:A (2.1) BS02 NDP N/A GO:0000166 ... D9N170 39026651
    913658 8yq8:A (2.1) BS03 UMP N/A GO:0000166 ... D9N170 39026651
    913659 8yq8:A (2.1) BS04 UMP N/A GO:0000166 ... D9N170 39026651
    913660 8yq8:B (2.1) BS01 UMP N/A GO:0000166 ... D9N170 39026651
    913661 8yq8:B (2.1) BS02 A1LZS N/A GO:0000166 ... D9N170 39026651
    913662 8yq8:B (2.1) BS03 NDP N/A GO:0000166 ... D9N170 39026651
    913663 8yq8:B (2.1) BS04 UMP N/A GO:0000166 ... D9N170 39026651
    913664 8yq9:A (2.4) BS01 NDP N/A GO:0000166 ... D9N170 39026651
    913665 8yq9:A (2.4) BS02 A1LZT N/A GO:0000166 ... D9N170 39026651
    913666 8yq9:A (2.4) BS03 UMP N/A GO:0000166 ... D9N170 39026651
    913667 8yq9:A (2.4) BS04 UMP N/A GO:0000166 ... D9N170 39026651
    913668 8yq9:B (2.4) BS01 UMP N/A GO:0000166 ... D9N170 39026651
    913669 8yq9:B (2.4) BS02 NDP N/A GO:0000166 ... D9N170 39026651
    913670 8yq9:B (2.4) BS03 A1LZT N/A GO:0000166 ... D9N170 39026651
    913671 8yq9:B (2.4) BS04 UMP N/A GO:0000166 ... D9N170 39026651
    913672 8yqd:A (1.69) BS01 3MI N/A N/A P02766 39096004
    913673 8yqd:B (1.69) BS01 3MI N/A N/A P02766 39096004
    913674 8yqp:A (1.76) BS01 A1D6Y N/A GO:0016787 ... A0AAD3RSW3 39013318
    913675 8yqt:A (2.56) BS01 MG N/A GO:0000428 ... P42486 N/A
    913676 8yqt:A (2.56) BS02 ZN N/A GO:0000428 ... P42486 N/A
    913677 8yqt:B (2.56) BS01 ZN N/A GO:0000428 ... P42487 N/A
    913678 8yqt:G (2.56) BS01 ZN N/A N/A Q65157 N/A
    913679 8yqt:H (2.56) BS01 ZN N/A GO:0000428 ... P42488 N/A
    913680 8yqt:J (2.56) BS01 ZN N/A N/A Q65152 N/A
    913681 8yqt:J (2.56) BS02 ZN N/A N/A Q65152 N/A
    913682 8yqu:A (2.85) BS01 MG N/A GO:0000428 ... P42486 N/A
    913683 8yqu:A (2.85) BS02 ZN N/A GO:0000428 ... P42486 N/A
    913684 8yqu:A (2.85) BS03 ZN N/A GO:0000428 ... P42486 N/A
    913685 8yqu:B (2.85) BS01 ZN N/A GO:0000428 ... P42487 N/A
    913686 8yqu:G (2.85) BS01 ZN N/A N/A Q65157 N/A
    913687 8yqu:G (2.85) BS02 ZN N/A N/A Q65157 N/A
    913688 8yqu:H (2.85) BS01 ZN N/A GO:0000428 ... P42488 N/A
    913689 8yqu:J (2.85) BS01 ZN N/A N/A Q65152 N/A
    913690 8yqu:J (2.85) BS02 ZN N/A N/A Q65152 N/A
    913691 8yqu:J (2.85) BS03 ZN N/A N/A Q65152 N/A
    913692 8yqv:A (2.67) BS01 MG N/A GO:0000428 ... P42486 N/A
    913693 8yqv:A (2.67) BS02 ZN N/A GO:0000428 ... P42486 N/A
    913694 8yqv:B (2.67) BS01 ZN N/A GO:0000428 ... P42487 N/A
    913695 8yqv:G (2.67) BS01 ZN N/A N/A Q65157 N/A
    913696 8yqv:H (2.67) BS01 ZN N/A GO:0000428 ... P42488 N/A
    913697 8yqw:A (2.68) BS01 MG N/A GO:0000428 ... P42486 N/A
    913698 8yqw:A (2.68) BS02 ZN N/A GO:0000428 ... P42486 N/A
    913699 8yqw:A (2.68) BS03 ZN N/A GO:0000428 ... P42486 N/A
    913700 8yqw:B (2.68) BS01 ZN N/A GO:0000428 ... P42487 N/A
    913701 8yqw:G (2.68) BS01 ZN N/A N/A Q65157 N/A
    913702 8yqw:G (2.68) BS02 ZN N/A N/A Q65157 N/A
    913703 8yqw:H (2.68) BS01 ZN N/A GO:0000428 ... P42488 N/A
    913704 8yqw:J (2.68) BS01 ZN N/A N/A Q65152 N/A
    913705 8yqw:J (2.68) BS02 ZN N/A N/A Q65152 N/A
    913706 8yqy:A (3.68) BS01 MG N/A GO:0000428 ... P42486 N/A
    913707 8yqy:A (3.68) BS02 ZN N/A GO:0000428 ... P42486 N/A
    913708 8yqy:A (3.68) BS03 ZN N/A GO:0000428 ... P42486 N/A
    913709 8yqy:B (3.68) BS01 ZN N/A GO:0000428 ... P42487 N/A
    913710 8yqy:G (3.68) BS01 ZN N/A N/A Q65157 N/A
    913711 8yqy:G (3.68) BS02 ZN N/A N/A Q65157 N/A
    913712 8yqy:H (3.68) BS01 ZN N/A GO:0000428 ... P42488 N/A
    913713 8yqy:J (3.68) BS01 ZN N/A N/A Q65152 N/A
    913714 8yqy:J (3.68) BS02 ZN N/A N/A Q65152 N/A
    913715 8yqy:J (3.68) BS03 ZN N/A N/A Q65152 N/A
    913716 8yqz:A (2.78) BS01 MG N/A GO:0000428 ... P42486 N/A
    913717 8yqz:A (2.78) BS02 ZN N/A GO:0000428 ... P42486 N/A
    913718 8yqz:B (2.78) BS01 dna N/A GO:0000428 ... P42487 N/A
    913719 8yqz:B (2.78) BS02 ZN N/A GO:0000428 ... P42487 N/A
    913720 8yqz:G (2.78) BS01 ZN N/A N/A Q65157 N/A
    913721 8yqz:H (2.78) BS01 ZN N/A GO:0000428 ... P42488 N/A
    913722 8yr2:A (2.89) BS01 41U ? GO:0003779 ... P23975 38750358
    913723 8yr2:A (2.89) BS02 PIO ? GO:0003779 ... P23975 38750358
    913724 8yr2:A (2.89) BS03 CLR ? GO:0003779 ... P23975 38750358
    913725 8yr2:A (2.89) BS04 CLR ? GO:0003779 ... P23975 38750358
    913726 8yr2:A (2.89) BS05 CLR ? GO:0003779 ... P23975 38750358
    913727 8yr2:A (2.89) BS06 CLR ? GO:0003779 ... P23975 38750358
    913728 8yr2:A (2.89) BS07 A1LX7 ? GO:0003779 ... P23975 38750358
    913729 8yr2:A (2.89) BS08 A1LX7 ? GO:0003779 ... P23975 38750358
    913730 8yr2:A (2.89) BS09 CLR ? GO:0003779 ... P23975 38750358
    913731 8yr2:A (2.89) BS10 CLR ? GO:0003779 ... P23975 38750358
    913732 8yr2:A (2.89) BS11 CLR ? GO:0003779 ... P23975 38750358
    913733 8yr2:A (2.89) BS12 CLR ? GO:0003779 ... P23975 38750358
    913734 8yr2:B (2.89) BS01 41U ? GO:0003779 ... P23975 38750358
    913735 8yr2:B (2.89) BS02 PIO ? GO:0003779 ... P23975 38750358
    913736 8yr2:B (2.89) BS03 CLR ? GO:0003779 ... P23975 38750358
    913737 8yr2:B (2.89) BS04 CLR ? GO:0003779 ... P23975 38750358
    913738 8yr2:B (2.89) BS05 CLR ? GO:0003779 ... P23975 38750358
    913739 8yr2:B (2.89) BS06 CLR ? GO:0003779 ... P23975 38750358
    913740 8yr2:B (2.89) BS07 A1LX7 ? GO:0003779 ... P23975 38750358
    913741 8yr2:B (2.89) BS08 A1LX7 ? GO:0003779 ... P23975 38750358
    913742 8yr2:B (2.89) BS09 CLR ? GO:0003779 ... P23975 38750358
    913743 8yr2:B (2.89) BS10 CLR ? GO:0003779 ... P23975 38750358
    913744 8yr2:B (2.89) BS11 CLR ? GO:0003779 ... P23975 38750358
    913745 8yr2:B (2.89) BS12 CLR ? GO:0003779 ... P23975 38750358
    913746 8yr3:A (3.2) BS01 GSH N/A GO:0005524 ... Q9NP58 38822018
    913747 8yr3:B (3.2) BS01 GSH N/A GO:0005524 ... Q9NP58 38822018
    913748 8yr4:A (3.1) BS01 FGA N/A GO:0005524 ... Q9NP58 38822018
    913749 8yr4:B (3.1) BS01 FGA N/A GO:0005524 ... Q9NP58 38822018
    913750 8yr6:A (2.44) BS01 A1LZV N/A GO:0003882 ... P23830 39693441
    913751 8yrc:A (1.7) BS01 CL ? GO:0005829 ... A0A0H3JTJ5 38581951
    913752 8yrg:R (3.14) BS01 A1LZU ? GO:0004930 ... P0ABE7
    Q96LA9
    38718132
    913753 8yrh:A (1.841) BS01 ROA N/A GO:0008233 ... P0DTD1 38865813
    913754 8yrl:A (2.37) BS01 MN N/A GO:0016020 ... B0YDN6 39507050
    913755 8yrl:A (2.37) BS02 UDP N/A GO:0016020 ... B0YDN6 39507050
    913756 8yrl:A (2.37) BS03 GZL N/A GO:0016020 ... B0YDN6 39507050
    913757 8yrl:B (2.37) BS01 UDP N/A GO:0016020 ... B0YDN6 39507050
    913758 8yrl:B (2.37) BS02 MN N/A GO:0016020 ... B0YDN6 39507050
    913759 8yrl:B (2.37) BS03 GZL N/A GO:0016020 ... B0YDN6 39507050
    913760 8yrs:A (2.43) BS01 dna N/A GO:0003676 ... P46063 N/A
    913761 8yrs:A (2.43) BS02 dna N/A GO:0003676 ... P46063 N/A
    913762 8yrs:A (2.43) BS03 ZN N/A GO:0003676 ... P46063 N/A
    913763 8yrs:B (2.43) BS01 dna N/A GO:0003676 ... P46063 N/A
    913764 8yrs:B (2.43) BS02 dna N/A GO:0003676 ... P46063 N/A
    913765 8yrs:B (2.43) BS03 ZN N/A GO:0003676 ... P46063 N/A
    913766 8yrt:A (2.0) BS01 PLP ? GO:0003824 ... F4KWH0 39406293
    913767 8yru:A (2.0) BS01 ZXN ? GO:0003824 ... F4KWH0 39406293
    913768 8yrv:A (1.7) BS01 OCF ? GO:0003824 ... F4KWH0 39539521
    913769 8ys2:M (5.2) BS01 CA N/A N/A P98155 39127734
    913770 8ys2:M (5.2) BS02 CA N/A N/A P98155 39127734
    913771 8ys2:N (5.2) BS01 CA N/A N/A P98155 39127734
    913772 8ys2:N (5.2) BS02 CA N/A N/A P98155 39127734
    913773 8ys2:O (5.2) BS01 CA N/A N/A P98155 39127734
    913774 8ys2:O (5.2) BS02 CA N/A N/A P98155 39127734
    913775 8ys2:P (5.2) BS01 CA N/A N/A P98155 39127734
    913776 8ys2:P (5.2) BS02 CA N/A N/A P98155 39127734
    913777 8ys4:M (4.8) BS01 CA N/A N/A P98155 39127734
    913778 8ys4:N (4.8) BS01 CA N/A N/A P98155 39127734
    913779 8ys4:O (4.8) BS01 CA N/A N/A P98155 39127734
    913780 8ys4:P (4.8) BS01 CA N/A N/A P98155 39127734
    913781 8ys4:Q (4.8) BS01 CA N/A N/A P98155 39127734
    913782 8ys4:R (4.8) BS01 CA N/A N/A P98155 39127734
    913783 8ys4:S (4.8) BS01 CA N/A N/A P98155 39127734
    913784 8ys4:T (4.8) BS01 CA N/A N/A P98155 39127734
    913785 8ys9:A (1.46) BS01 SAH N/A GO:0000773 ... S9SHS0 39356767
    913786 8ys9:A (1.46) BS02 A1L1H N/A GO:0000773 ... S9SHS0 39356767
    913787 8ys9:B (1.46) BS01 SAH N/A GO:0000773 ... S9SHS0 39356767
    913788 8ysa:A (1.5) BS01 peptide 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0008233 ... P0DTD1 N/A
    913789 8ysc:A (2.25) BS01 ATP N/A N/A A0A345ILN6 39761885
    913790 8ysc:A (2.25) BS02 ATP N/A N/A A0A345ILN6 39761885
    913791 8ysc:A (2.25) BS03 MG N/A N/A A0A345ILN6 39761885
    913792 8ysc:A (2.25) BS04 MG N/A N/A A0A345ILN6 39761885
    913793 8ysd:A (1.61) BS01 ATP N/A N/A A0A345ILN6 39761885
    913794 8ysd:A (1.61) BS02 ATP N/A N/A A0A345ILN6 39761885
    913795 8ysd:A (1.61) BS03 MG N/A N/A A0A345ILN6 39761885
    913796 8ysd:A (1.61) BS04 MG N/A N/A A0A345ILN6 39761885
    913797 8yse:A (2.19) BS01 DTP N/A N/A A0A345ILN6 39761885
    913798 8yse:A (2.19) BS02 DTP N/A N/A A0A345ILN6 39761885
    913799 8yse:A (2.19) BS03 MG N/A N/A A0A345ILN6 39761885
    913800 8yse:A (2.19) BS04 MG N/A N/A A0A345ILN6 39761885

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).