SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    913801 8ysg:A (2.171) BS01 GTP N/A N/A A0A345ILN6 39761885
    913802 8ysg:A (2.171) BS02 GTP N/A N/A A0A345ILN6 39761885
    913803 8ysg:A (2.171) BS03 MG N/A N/A A0A345ILN6 39761885
    913804 8ysg:A (2.171) BS04 MG N/A N/A A0A345ILN6 39761885
    913805 8ysi:A (1.897) BS01 UTP N/A N/A A0A345ILN6 39761885
    913806 8ysi:A (1.897) BS02 UTP N/A N/A A0A345ILN6 39761885
    913807 8ysj:A (1.903) BS01 2KH N/A N/A A0A345ILN6 39761885
    913808 8ysj:A (1.903) BS02 2KH N/A N/A A0A345ILN6 39761885
    913809 8ysk:A (1.984) BS01 UTP N/A N/A A0A345ILN6 39761885
    913810 8ysk:A (1.984) BS02 MN N/A N/A A0A345ILN6 39761885
    913811 8ysk:A (1.984) BS03 MN N/A N/A A0A345ILN6 39761885
    913812 8ysl:A (1.98) BS01 ATP N/A N/A A0A345ILN6 39761885
    913813 8ysl:A (1.98) BS02 UTP N/A N/A A0A345ILN6 39761885
    913814 8ysl:A (1.98) BS03 MG N/A N/A A0A345ILN6 39761885
    913815 8ysl:A (1.98) BS04 MG N/A N/A A0A345ILN6 39761885
    913816 8ysm:A (1.5) BS01 CTP N/A N/A A0A345ILN6 39761885
    913817 8ysm:A (1.5) BS02 MN N/A N/A A0A345ILN6 39761885
    913818 8ysm:A (1.5) BS03 MN N/A N/A A0A345ILN6 39761885
    913819 8yso:A (1.68) BS01 ATP N/A N/A A0A345ILN6 39761885
    913820 8yso:A (1.68) BS02 ATP N/A N/A A0A345ILN6 39761885
    913821 8yso:A (1.68) BS03 MG N/A N/A A0A345ILN6 39761885
    913822 8yso:A (1.68) BS04 MG N/A N/A A0A345ILN6 39761885
    913823 8ysr:A (2.04) BS01 TEW N/A N/A A0A345ILN6 39761885
    913824 8ysu:A (1.944) BS01 CTP N/A N/A A0A345ILN6 39761885
    913825 8ysu:A (1.944) BS02 CTP N/A N/A A0A345ILN6 39761885
    913826 8ysu:A (1.944) BS03 MG N/A N/A A0A345ILN6 39761885
    913827 8ysu:A (1.944) BS04 MG N/A N/A A0A345ILN6 39761885
    913828 8ysx:A (2.2) BS01 A1L0D N/A GO:0000502 ... Q5W412 38906067
    913829 8ysx:C (2.2) BS01 A1L0D N/A GO:0004298 ... Q5W416 38906067
    913830 8ysx:D (2.2) BS01 A1L0D N/A GO:0004298 ... Q5W416 38906067
    913831 8ysx:F (2.2) BS01 A1L0D N/A GO:0000502 ... Q5W412 38906067
    913832 8yt1:A (2.22) BS01 ZN N/A GO:0005737 ... Q83V25 N/A
    913833 8yt1:B (2.22) BS01 ZN N/A GO:0005737 ... Q83V25 N/A
    913834 8yt1:C (2.22) BS01 ZN N/A GO:0005737 ... Q83V25 N/A
    913835 8yt2:A (2.02) BS01 ZN N/A GO:0005737 ... Q83V25 N/A
    913836 8yt2:B (2.02) BS01 ZN N/A GO:0005737 ... Q83V25 N/A
    913837 8yt2:C (2.02) BS01 ZN N/A GO:0005737 ... Q83V25 N/A
    913838 8yt5:A (1.6) BS01 ADP 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    913839 8yt5:A (1.6) BS02 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    913840 8yt5:A (1.6) BS03 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    913841 8yt8:B (3.5) BS01 peptide N/A N/A P82349 39663450
    913842 8yt8:D (3.5) BS01 CLR N/A N/A P82347 39663450
    913843 8yt8:E (3.5) BS01 ZN N/A N/A P11531 39663450
    913844 8yt8:G (3.5) BS01 P5S N/A N/A P82348 39663450
    913845 8yt8:O (3.5) BS01 peptide N/A N/A Q62165 39663450
    913846 8yt8:O (3.5) BS02 CA N/A N/A Q62165 39663450
    913847 8yt8:S (3.5) BS01 CLR N/A N/A Q62147 39663450
    913848 8ytd:A (2.34) BS01 peptide N/A N/A P04629 38950284
    913849 8ytd:A (2.34) BS02 peptide N/A N/A P04629 38950284
    913850 8yte:A (2.26) BS01 peptide N/A N/A P04629 38950284
    913851 8yte:C (2.26) BS01 peptide N/A N/A P04629 38950284
    913852 8yte:C (2.26) BS02 GM1 N/A N/A P04629 38950284
    913853 8ytf:A (1.59) BS01 peptide N/A N/A Q7Z5L9 39616187
    913854 8ytf:A (1.59) BS02 ZN N/A N/A Q7Z5L9 39616187
    913855 8ytf:A (1.59) BS03 ZN N/A N/A Q7Z5L9 39616187
    913856 8ytg:A (1.45) BS01 peptide N/A N/A Q7Z5L9 39616187
    913857 8ytg:A (1.45) BS02 ZN N/A N/A Q7Z5L9 39616187
    913858 8ytg:A (1.45) BS03 ZN N/A N/A Q7Z5L9 39616187
    913859 8yth:A (2.4) BS01 peptide N/A N/A Q7Z5L9 39616187
    913860 8yth:A (2.4) BS02 ZN N/A N/A Q7Z5L9 39616187
    913861 8yth:A (2.4) BS03 ZN N/A N/A Q7Z5L9 39616187
    913862 8yti:A (2.7) BS01 dna ? GO:0000786 ... P68431 N/A
    913863 8yti:A (2.7) BS02 dna ? GO:0000786 ... P68431 N/A
    913864 8yti:B (2.7) BS01 dna ? GO:0000781 ... P62805 N/A
    913865 8yti:B (2.7) BS02 dna ? GO:0000781 ... P62805 N/A
    913866 8yti:C (2.7) BS01 dna ? GO:0000786 ... P04908 N/A
    913867 8yti:C (2.7) BS02 dna ? GO:0000786 ... P04908 N/A
    913868 8yti:D (2.7) BS01 dna ? GO:0000786 ... P06899 N/A
    913869 8yti:D (2.7) BS02 dna ? GO:0000786 ... P06899 N/A
    913870 8yti:E (2.7) BS01 dna ? GO:0000786 ... P68431 N/A
    913871 8yti:E (2.7) BS02 dna ? GO:0000786 ... P68431 N/A
    913872 8yti:F (2.7) BS01 dna ? GO:0000781 ... P62805 N/A
    913873 8yti:F (2.7) BS02 dna ? GO:0000781 ... P62805 N/A
    913874 8yti:G (2.7) BS01 dna ? GO:0000786 ... P04908 N/A
    913875 8yti:G (2.7) BS02 dna ? GO:0000786 ... P04908 N/A
    913876 8yti:G (2.7) BS03 CA ? GO:0000786 ... P04908 N/A
    913877 8yti:H (2.7) BS01 dna ? GO:0000786 ... P06899 N/A
    913878 8yti:H (2.7) BS02 dna ? GO:0000786 ... P06899 N/A
    913879 8yti:K (2.7) BS01 dna ? GO:0000786 ... P68431 N/A
    913880 8yti:K (2.7) BS02 dna ? GO:0000786 ... P68431 N/A
    913881 8yti:L (2.7) BS01 dna ? GO:0000781 ... P62805 N/A
    913882 8yti:L (2.7) BS02 dna ? GO:0000781 ... P62805 N/A
    913883 8yti:M (2.7) BS01 dna ? GO:0000786 ... P04908 N/A
    913884 8yti:M (2.7) BS02 dna ? GO:0000786 ... P04908 N/A
    913885 8yti:N (2.7) BS01 dna ? GO:0000786 ... P06899 N/A
    913886 8yti:N (2.7) BS02 dna ? GO:0000786 ... P06899 N/A
    913887 8yti:O (2.7) BS01 dna ? GO:0000786 ... P68431 N/A
    913888 8yti:O (2.7) BS02 dna ? GO:0000786 ... P68431 N/A
    913889 8yti:P (2.7) BS01 dna ? GO:0000781 ... P62805 N/A
    913890 8yti:P (2.7) BS02 dna ? GO:0000781 ... P62805 N/A
    913891 8yti:Q (2.7) BS01 dna ? GO:0000786 ... P04908 N/A
    913892 8yti:Q (2.7) BS02 dna ? GO:0000786 ... P04908 N/A
    913893 8yti:Q (2.7) BS03 CA ? GO:0000786 ... P04908 N/A
    913894 8yti:R (2.7) BS01 dna ? GO:0000786 ... P06899 N/A
    913895 8yti:R (2.7) BS02 dna ? GO:0000786 ... P06899 N/A
    913896 8yti:U (2.7) BS01 dna ? GO:0000786 ... Q92522 N/A
    913897 8yto:A (1.04) BS01 A1LZO N/A N/A N/A 38909835
    913898 8ytp:A (1.36) BS01 A1LZO N/A N/A N/A 38909835
    913899 8ytq:A (1.7) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    913900 8ytq:C (1.7) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    913901 8ytq:D (1.7) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    913902 8ytr:A (1.8) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    913903 8ytr:B (1.8) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    913904 8yts:A (1.15) BS01 HEC ? GO:0009055 ... W0DLP1 N/A
    913905 8yts:B (1.15) BS01 HEC ? GO:0009055 ... W0DLP1 N/A
    913906 8ytu:A (1.34) BS01 EDO N/A N/A A0A1H3QT72 39745946
    913907 8ytx:A (2.53) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38972078
    913908 8ytx:A (2.53) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 38972078
    913909 8ytx:A (2.53) BS03 A1D68 3.6.5.- GO:0000226 ... Q2XVP4 38972078
    913910 8ytx:B (2.53) BS01 GDP 6.3.2.25 GO:0003924 ... A0A287AGU7 38972078
    913911 8ytx:B (2.53) BS02 A1D68 6.3.2.25 GO:0003924 ... A0A287AGU7 38972078
    913912 8ytx:C (2.53) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38972078
    913913 8ytx:C (2.53) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 38972078
    913914 8ytx:D (2.53) BS01 GDP 6.3.2.25 GO:0003924 ... A0A287AGU7 38972078
    913915 8ytx:D (2.53) BS02 A1D68 6.3.2.25 GO:0003924 ... A0A287AGU7 38972078
    913916 8ytx:F (2.53) BS01 ACP 6.3.2.25 GO:0000226 ... A0A8V0Z8P0 38972078
    913917 8ytz:A (1.7) BS01 ZN N/A N/A A0A3E0H050 39745946
    913918 8yu5:A (1.45) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    913919 8yu5:A (1.45) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    913920 8yu5:A (1.45) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    913921 8yu5:B (1.45) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    913922 8yu5:B (1.45) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    913923 8yu6:A (1.55) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    913924 8yu6:A (1.55) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    913925 8yu6:A (1.55) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    913926 8yu6:A (1.55) BS04 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    913927 8yu6:B (1.55) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    913928 8yu6:B (1.55) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    913929 8yu6:B (1.55) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    913930 8yu9:A (3.25) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38972078
    913931 8yu9:A (3.25) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 38972078
    913932 8yu9:B (3.25) BS01 A1D7A ? GO:0003924 ... A0A287AGU7 38972078
    913933 8yu9:B (3.25) BS02 GDP ? GO:0003924 ... A0A287AGU7 38972078
    913934 8yu9:B (3.25) BS03 MG ? GO:0003924 ... A0A287AGU7 38972078
    913935 8yu9:C (3.25) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38972078
    913936 8yu9:C (3.25) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 38972078
    913937 8yu9:C (3.25) BS03 A1D7A 3.6.5.- GO:0000226 ... Q2XVP4 38972078
    913938 8yu9:D (3.25) BS01 A1D7A ? GO:0003924 ... A0A287AGU7 38972078
    913939 8yu9:D (3.25) BS02 GDP ? GO:0003924 ... A0A287AGU7 38972078
    913940 8yu9:F (3.25) BS01 ACP 6.3.2.25 GO:0000226 ... A0A8V0Z8P0 38972078
    913941 8yua:A (2.37) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38972078
    913942 8yua:A (2.37) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 38972078
    913943 8yua:A (2.37) BS03 MG 3.6.5.- GO:0000226 ... Q2XVP4 38972078
    913944 8yua:B (2.37) BS01 GDP ? GO:0003924 ... A0A287AGU7 38972078
    913945 8yua:B (2.37) BS02 A1D69 ? GO:0003924 ... A0A287AGU7 38972078
    913946 8yua:C (2.37) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38972078
    913947 8yua:C (2.37) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 38972078
    913948 8yua:D (2.37) BS01 GDP ? GO:0003924 ... A0A287AGU7 38972078
    913949 8yua:D (2.37) BS02 A1D69 ? GO:0003924 ... A0A287AGU7 38972078
    913950 8yua:F (2.37) BS01 ACP 6.3.2.25 GO:0000226 ... A0A8V0Z8P0 38972078
    913951 8yud:A (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    913952 8yud:A (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    913953 8yud:B (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    913954 8yud:B (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    913955 8yud:C (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    913956 8yud:C (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    913957 8yud:D (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    913958 8yud:D (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    913959 8yud:E (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    913960 8yud:E (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    913961 8yud:F (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    913962 8yud:F (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    913963 8yuo:0 (2.25) BS01 rna N/A GO:0000027 ... P0A7N9 39300229
    913964 8yuo:1 (2.25) BS01 rna N/A GO:0002181 ... P0A7P5 39300229
    913965 8yuo:2 (2.25) BS01 rna N/A GO:0002181 ... P0A7Q1 39300229
    913966 8yuo:3 (2.25) BS01 rna N/A GO:0002181 ... P0A7Q6 39300229
    913967 8yuo:4 (2.25) BS01 rna N/A GO:0002181 ... P0A7M9 39300229
    913968 8yuo:4 (2.25) BS02 rna N/A GO:0002181 ... P0A7M9 39300229
    913969 8yuo:B (2.25) BS01 rna N/A GO:0000028 ... P0A7V0 39300229
    913970 8yuo:C (2.25) BS01 rna N/A GO:0000028 ... P0A7V3 39300229
    913971 8yuo:D (2.25) BS01 rna N/A GO:0000028 ... P0A7V8 39300229
    913972 8yuo:E (2.25) BS01 rna N/A GO:0000028 ... P0A7W1 39300229
    913973 8yuo:F (2.25) BS01 rna N/A GO:0002181 ... P02358 39300229
    913974 8yuo:G (2.25) BS01 rna N/A GO:0000028 ... P02359 39300229
    913975 8yuo:H (2.25) BS01 rna N/A GO:0000028 ... P0A7W7 39300229
    913976 8yuo:I (2.25) BS01 rna N/A GO:0000049 ... P0A7X3 39300229
    913977 8yuo:I (2.25) BS02 rna N/A GO:0000049 ... P0A7X3 39300229
    913978 8yuo:J (2.25) BS01 rna N/A GO:0000049 ... P0A7R5 39300229
    913979 8yuo:K (2.25) BS01 rna N/A GO:0002181 ... P0A7R9 39300229
    913980 8yuo:L (2.25) BS01 rna N/A GO:0000049 ... P0A7S3 39300229
    913981 8yuo:L (2.25) BS02 rna N/A GO:0000049 ... P0A7S3 39300229
    913982 8yuo:M (2.25) BS01 rna N/A GO:0000049 ... P0A7S9 39300229
    913983 8yuo:M (2.25) BS02 rna N/A GO:0000049 ... P0A7S9 39300229
    913984 8yuo:N (2.25) BS01 rna N/A GO:0000028 ... P0AG59 39300229
    913985 8yuo:O (2.25) BS01 rna N/A GO:0000028 ... P0ADZ4 39300229
    913986 8yuo:O (2.25) BS02 rna N/A GO:0000028 ... P0ADZ4 39300229
    913987 8yuo:P (2.25) BS01 rna N/A GO:0000028 ... P0A7T3 39300229
    913988 8yuo:Q (2.25) BS01 rna N/A GO:0000028 ... P0AG63 39300229
    913989 8yuo:R (2.25) BS01 rna N/A GO:0002181 ... P0A7T7 39300229
    913990 8yuo:S (2.25) BS01 rna N/A GO:0000028 ... P0A7U3 39300229
    913991 8yuo:T (2.25) BS01 rna N/A GO:0000028 ... P0A7U7 39300229
    913992 8yuo:U (2.25) BS01 rna N/A GO:0000028 ... P68679 39300229
    913993 8yuo:c (2.25) BS01 rna N/A GO:0000027 ... P60422 39300229
    913994 8yuo:d (2.25) BS01 rna N/A GO:0000027 ... P60438 39300229
    913995 8yuo:e (2.25) BS01 rna N/A GO:0001070 ... P60723 39300229
    913996 8yuo:f (2.25) BS01 rna N/A GO:0000027 ... P62399 39300229
    913997 8yuo:f (2.25) BS02 rna N/A GO:0000027 ... P62399 39300229
    913998 8yuo:f (2.25) BS03 rna N/A GO:0000027 ... P62399 39300229
    913999 8yuo:g (2.25) BS01 rna N/A GO:0000027 ... P0AG55 39300229
    914000 8yuo:h (2.25) BS01 rna N/A GO:0002181 ... P0A7R1 39300229

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).