SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    914001 8yuo:i (2.25) BS01 rna N/A GO:0002181 ... P0AA10 39300229
    914002 8yuo:j (2.25) BS01 rna N/A GO:0002181 ... P0ADY3 39300229
    914003 8yuo:j (2.25) BS02 rna N/A GO:0002181 ... P0ADY3 39300229
    914004 8yuo:k (2.25) BS01 rna N/A GO:0002181 ... P02413 39300229
    914005 8yuo:l (2.25) BS01 rna N/A GO:0000027 ... P0ADY7 39300229
    914006 8yuo:l (2.25) BS02 rna N/A GO:0000027 ... P0ADY7 39300229
    914007 8yuo:l (2.25) BS03 rna N/A GO:0000027 ... P0ADY7 39300229
    914008 8yuo:m (2.25) BS01 rna N/A GO:0000027 ... P0AG44 39300229
    914009 8yuo:n (2.25) BS01 rna N/A GO:0002181 ... P0C018 39300229
    914010 8yuo:n (2.25) BS02 rna N/A GO:0002181 ... P0C018 39300229
    914011 8yuo:o (2.25) BS01 rna N/A GO:0000027 ... P0A7K6 39300229
    914012 8yuo:o (2.25) BS02 rna N/A GO:0000027 ... P0A7K6 39300229
    914013 8yuo:p (2.25) BS01 rna N/A GO:0000027 ... P0A7L3 39300229
    914014 8yuo:q (2.25) BS01 rna N/A GO:0002181 ... P0AG48 39300229
    914015 8yuo:r (2.25) BS01 rna N/A GO:0002181 ... P61175 39300229
    914016 8yuo:s (2.25) BS01 rna N/A GO:0000027 ... P0ADZ0 39300229
    914017 8yuo:t (2.25) BS01 rna N/A GO:0000027 ... P60624 39300229
    914018 8yuo:u (2.25) BS01 rna N/A GO:0000027 ... P68919 39300229
    914019 8yuo:v (2.25) BS01 rna N/A GO:0000027 ... P0A7L8 39300229
    914020 8yuo:v (2.25) BS02 rna N/A GO:0000027 ... P0A7L8 39300229
    914021 8yuo:w (2.25) BS01 rna N/A GO:0000027 ... P0A7M2 39300229
    914022 8yuo:x (2.25) BS01 rna N/A GO:0000027 ... P0A7M6 39300229
    914023 8yuo:y (2.25) BS01 rna N/A GO:0000027 ... P0AG51 39300229
    914024 8yuo:z (2.25) BS01 rna N/A GO:0000027 ... P0A7N4 39300229
    914025 8yup:0 (2.39) BS01 rna N/A GO:0000027 ... P0A7N9 N/A
    914026 8yup:1 (2.39) BS01 rna N/A GO:0002181 ... P0A7P5 N/A
    914027 8yup:2 (2.39) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    914028 8yup:3 (2.39) BS01 rna N/A GO:0002181 ... P0A7Q6 N/A
    914029 8yup:4 (2.39) BS01 rna N/A GO:0002181 ... P0A7M9 N/A
    914030 8yup:B (2.39) BS01 rna N/A GO:0000028 ... P0A7V0 N/A
    914031 8yup:C (2.39) BS01 rna N/A GO:0000028 ... P0A7V3 N/A
    914032 8yup:D (2.39) BS01 rna N/A GO:0000028 ... P0A7V8 N/A
    914033 8yup:E (2.39) BS01 rna N/A GO:0000028 ... P0A7W1 N/A
    914034 8yup:F (2.39) BS01 rna N/A GO:0002181 ... P02358 N/A
    914035 8yup:G (2.39) BS01 rna N/A GO:0000028 ... P02359 N/A
    914036 8yup:H (2.39) BS01 rna N/A GO:0000028 ... P0A7W7 N/A
    914037 8yup:I (2.39) BS01 rna N/A GO:0000049 ... P0A7X3 N/A
    914038 8yup:I (2.39) BS02 rna N/A GO:0000049 ... P0A7X3 N/A
    914039 8yup:J (2.39) BS01 rna N/A GO:0000049 ... P0A7R5 N/A
    914040 8yup:K (2.39) BS01 rna N/A GO:0002181 ... P0A7R9 N/A
    914041 8yup:L (2.39) BS01 rna N/A GO:0000049 ... P0A7S3 N/A
    914042 8yup:L (2.39) BS02 rna N/A GO:0000049 ... P0A7S3 N/A
    914043 8yup:M (2.39) BS01 rna N/A GO:0000049 ... P0A7S9 N/A
    914044 8yup:M (2.39) BS02 rna N/A GO:0000049 ... P0A7S9 N/A
    914045 8yup:N (2.39) BS01 rna N/A GO:0000028 ... P0AG59 N/A
    914046 8yup:O (2.39) BS01 rna N/A GO:0000028 ... P0ADZ4 N/A
    914047 8yup:O (2.39) BS02 rna N/A GO:0000028 ... P0ADZ4 N/A
    914048 8yup:P (2.39) BS01 rna N/A GO:0000028 ... P0A7T3 N/A
    914049 8yup:Q (2.39) BS01 rna N/A GO:0000028 ... P0AG63 N/A
    914050 8yup:R (2.39) BS01 rna N/A GO:0002181 ... P0A7T7 N/A
    914051 8yup:S (2.39) BS01 rna N/A GO:0000028 ... P0A7U3 N/A
    914052 8yup:T (2.39) BS01 rna N/A GO:0000028 ... P0A7U7 N/A
    914053 8yup:U (2.39) BS01 rna N/A GO:0000028 ... P68679 N/A
    914054 8yup:c (2.39) BS01 rna N/A GO:0000027 ... P60422 N/A
    914055 8yup:d (2.39) BS01 rna N/A GO:0000027 ... P60438 N/A
    914056 8yup:e (2.39) BS01 rna N/A GO:0001070 ... P60723 N/A
    914057 8yup:f (2.39) BS01 rna N/A GO:0000027 ... P62399 N/A
    914058 8yup:f (2.39) BS02 rna N/A GO:0000027 ... P62399 N/A
    914059 8yup:f (2.39) BS03 rna N/A GO:0000027 ... P62399 N/A
    914060 8yup:g (2.39) BS01 rna N/A GO:0000027 ... P0AG55 N/A
    914061 8yup:h (2.39) BS01 rna N/A GO:0002181 ... P0A7R1 N/A
    914062 8yup:i (2.39) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    914063 8yup:j (2.39) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    914064 8yup:j (2.39) BS02 rna N/A GO:0002181 ... P0ADY3 N/A
    914065 8yup:k (2.39) BS01 rna N/A GO:0002181 ... P02413 N/A
    914066 8yup:l (2.39) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    914067 8yup:l (2.39) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    914068 8yup:l (2.39) BS03 rna N/A GO:0000027 ... P0ADY7 N/A
    914069 8yup:m (2.39) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    914070 8yup:n (2.39) BS01 rna N/A GO:0002181 ... P0C018 N/A
    914071 8yup:n (2.39) BS02 rna N/A GO:0002181 ... P0C018 N/A
    914072 8yup:o (2.39) BS01 rna N/A GO:0000027 ... P0A7K6 N/A
    914073 8yup:o (2.39) BS02 rna N/A GO:0000027 ... P0A7K6 N/A
    914074 8yup:p (2.39) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    914075 8yup:q (2.39) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    914076 8yup:r (2.39) BS01 rna N/A GO:0002181 ... P61175 N/A
    914077 8yup:s (2.39) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    914078 8yup:t (2.39) BS01 rna N/A GO:0000027 ... P60624 N/A
    914079 8yup:u (2.39) BS01 rna N/A GO:0000027 ... P68919 N/A
    914080 8yup:v (2.39) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    914081 8yup:v (2.39) BS02 rna N/A GO:0000027 ... P0A7L8 N/A
    914082 8yup:w (2.39) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    914083 8yup:x (2.39) BS01 rna N/A GO:0000027 ... P0A7M6 N/A
    914084 8yup:y (2.39) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    914085 8yup:y (2.39) BS02 rna N/A GO:0000027 ... P0AG51 N/A
    914086 8yup:z (2.39) BS01 rna N/A GO:0000027 ... P0A7N4 N/A
    914087 8yuq:0 (2.41) BS01 rna N/A GO:0000027 ... P0A7N9 39300229
    914088 8yuq:1 (2.41) BS01 rna N/A GO:0002181 ... P0A7P5 39300229
    914089 8yuq:2 (2.41) BS01 rna N/A GO:0002181 ... P0A7Q1 39300229
    914090 8yuq:3 (2.41) BS01 rna N/A GO:0002181 ... P0A7Q6 39300229
    914091 8yuq:4 (2.41) BS01 rna N/A GO:0002181 ... P0A7M9 39300229
    914092 8yuq:B (2.41) BS01 rna N/A GO:0000028 ... P0A7V0 39300229
    914093 8yuq:C (2.41) BS01 rna N/A GO:0000028 ... P0A7V3 39300229
    914094 8yuq:D (2.41) BS01 rna N/A GO:0000028 ... P0A7V8 39300229
    914095 8yuq:E (2.41) BS01 rna N/A GO:0000028 ... P0A7W1 39300229
    914096 8yuq:F (2.41) BS01 rna N/A GO:0002181 ... P02358 39300229
    914097 8yuq:G (2.41) BS01 rna N/A GO:0000028 ... P02359 39300229
    914098 8yuq:H (2.41) BS01 rna N/A GO:0000028 ... P0A7W7 39300229
    914099 8yuq:I (2.41) BS01 rna N/A GO:0000049 ... P0A7X3 39300229
    914100 8yuq:I (2.41) BS02 rna N/A GO:0000049 ... P0A7X3 39300229
    914101 8yuq:J (2.41) BS01 rna N/A GO:0000049 ... P0A7R5 39300229
    914102 8yuq:K (2.41) BS01 rna N/A GO:0002181 ... P0A7R9 39300229
    914103 8yuq:L (2.41) BS01 rna N/A GO:0000049 ... P0A7S3 39300229
    914104 8yuq:M (2.41) BS01 rna N/A GO:0000049 ... P0A7S9 39300229
    914105 8yuq:M (2.41) BS02 rna N/A GO:0000049 ... P0A7S9 39300229
    914106 8yuq:N (2.41) BS01 rna N/A GO:0000028 ... P0AG59 39300229
    914107 8yuq:O (2.41) BS01 rna N/A GO:0000028 ... P0ADZ4 39300229
    914108 8yuq:O (2.41) BS02 rna N/A GO:0000028 ... P0ADZ4 39300229
    914109 8yuq:P (2.41) BS01 rna N/A GO:0000028 ... P0A7T3 39300229
    914110 8yuq:Q (2.41) BS01 rna N/A GO:0000028 ... P0AG63 39300229
    914111 8yuq:R (2.41) BS01 rna N/A GO:0002181 ... P0A7T7 39300229
    914112 8yuq:S (2.41) BS01 rna N/A GO:0000028 ... P0A7U3 39300229
    914113 8yuq:T (2.41) BS01 rna N/A GO:0000028 ... P0A7U7 39300229
    914114 8yuq:U (2.41) BS01 rna N/A GO:0000028 ... P68679 39300229
    914115 8yuq:c (2.41) BS01 rna N/A GO:0000027 ... P60422 39300229
    914116 8yuq:c (2.41) BS02 rna N/A GO:0000027 ... P60422 39300229
    914117 8yuq:d (2.41) BS01 rna N/A GO:0000027 ... P60438 39300229
    914118 8yuq:e (2.41) BS01 rna N/A GO:0001070 ... P60723 39300229
    914119 8yuq:f (2.41) BS01 rna N/A GO:0000027 ... P62399 39300229
    914120 8yuq:f (2.41) BS02 rna N/A GO:0000027 ... P62399 39300229
    914121 8yuq:f (2.41) BS03 rna N/A GO:0000027 ... P62399 39300229
    914122 8yuq:g (2.41) BS01 rna N/A GO:0000027 ... P0AG55 39300229
    914123 8yuq:h (2.41) BS01 rna N/A GO:0002181 ... P0A7R1 39300229
    914124 8yuq:i (2.41) BS01 rna N/A GO:0002181 ... P0AA10 39300229
    914125 8yuq:j (2.41) BS01 rna N/A GO:0002181 ... P0ADY3 39300229
    914126 8yuq:j (2.41) BS02 rna N/A GO:0002181 ... P0ADY3 39300229
    914127 8yuq:k (2.41) BS01 rna N/A GO:0002181 ... P02413 39300229
    914128 8yuq:l (2.41) BS01 rna N/A GO:0000027 ... P0ADY7 39300229
    914129 8yuq:l (2.41) BS02 rna N/A GO:0000027 ... P0ADY7 39300229
    914130 8yuq:l (2.41) BS03 rna N/A GO:0000027 ... P0ADY7 39300229
    914131 8yuq:m (2.41) BS01 rna N/A GO:0000027 ... P0AG44 39300229
    914132 8yuq:n (2.41) BS01 rna N/A GO:0002181 ... P0C018 39300229
    914133 8yuq:n (2.41) BS02 rna N/A GO:0002181 ... P0C018 39300229
    914134 8yuq:o (2.41) BS01 rna N/A GO:0000027 ... P0A7K6 39300229
    914135 8yuq:o (2.41) BS02 rna N/A GO:0000027 ... P0A7K6 39300229
    914136 8yuq:p (2.41) BS01 rna N/A GO:0000027 ... P0A7L3 39300229
    914137 8yuq:q (2.41) BS01 rna N/A GO:0002181 ... P0AG48 39300229
    914138 8yuq:r (2.41) BS01 rna N/A GO:0002181 ... P61175 39300229
    914139 8yuq:s (2.41) BS01 rna N/A GO:0000027 ... P0ADZ0 39300229
    914140 8yuq:t (2.41) BS01 rna N/A GO:0000027 ... P60624 39300229
    914141 8yuq:u (2.41) BS01 rna N/A GO:0000027 ... P68919 39300229
    914142 8yuq:v (2.41) BS01 rna N/A GO:0000027 ... P0A7L8 39300229
    914143 8yuq:v (2.41) BS02 rna N/A GO:0000027 ... P0A7L8 39300229
    914144 8yuq:w (2.41) BS01 rna N/A GO:0000027 ... P0A7M2 39300229
    914145 8yuq:x (2.41) BS01 rna N/A GO:0000027 ... P0A7M6 39300229
    914146 8yuq:y (2.41) BS01 rna N/A GO:0000027 ... P0AG51 39300229
    914147 8yuq:z (2.41) BS01 rna N/A GO:0000027 ... P0A7N4 39300229
    914148 8yur:0 (2.47) BS01 rna N/A GO:0000027 ... P0A7N9 39300229
    914149 8yur:1 (2.47) BS01 rna N/A GO:0002181 ... P0A7P5 39300229
    914150 8yur:2 (2.47) BS01 rna N/A GO:0002181 ... P0A7Q1 39300229
    914151 8yur:3 (2.47) BS01 rna N/A GO:0002181 ... P0A7Q6 39300229
    914152 8yur:4 (2.47) BS01 rna N/A GO:0002181 ... P0A7M9 39300229
    914153 8yur:B (2.47) BS01 rna N/A GO:0000028 ... P0A7V0 39300229
    914154 8yur:C (2.47) BS01 rna N/A GO:0000028 ... P0A7V3 39300229
    914155 8yur:D (2.47) BS01 rna N/A GO:0000028 ... P0A7V8 39300229
    914156 8yur:E (2.47) BS01 rna N/A GO:0000028 ... P0A7W1 39300229
    914157 8yur:F (2.47) BS01 rna N/A GO:0002181 ... P02358 39300229
    914158 8yur:G (2.47) BS01 rna N/A GO:0000028 ... P02359 39300229
    914159 8yur:G (2.47) BS02 rna N/A GO:0000028 ... P02359 39300229
    914160 8yur:H (2.47) BS01 rna N/A GO:0000028 ... P0A7W7 39300229
    914161 8yur:I (2.47) BS01 rna N/A GO:0000049 ... P0A7X3 39300229
    914162 8yur:I (2.47) BS02 rna N/A GO:0000049 ... P0A7X3 39300229
    914163 8yur:J (2.47) BS01 rna N/A GO:0000049 ... P0A7R5 39300229
    914164 8yur:K (2.47) BS01 rna N/A GO:0002181 ... P0A7R9 39300229
    914165 8yur:L (2.47) BS01 rna N/A GO:0000049 ... P0A7S3 39300229
    914166 8yur:L (2.47) BS02 rna N/A GO:0000049 ... P0A7S3 39300229
    914167 8yur:M (2.47) BS01 rna N/A GO:0000049 ... P0A7S9 39300229
    914168 8yur:M (2.47) BS02 rna N/A GO:0000049 ... P0A7S9 39300229
    914169 8yur:N (2.47) BS01 rna N/A GO:0000028 ... P0AG59 39300229
    914170 8yur:O (2.47) BS01 rna N/A GO:0000028 ... P0ADZ4 39300229
    914171 8yur:O (2.47) BS02 rna N/A GO:0000028 ... P0ADZ4 39300229
    914172 8yur:P (2.47) BS01 rna N/A GO:0000028 ... P0A7T3 39300229
    914173 8yur:Q (2.47) BS01 rna N/A GO:0000028 ... P0AG63 39300229
    914174 8yur:R (2.47) BS01 rna N/A GO:0002181 ... P0A7T7 39300229
    914175 8yur:S (2.47) BS01 rna N/A GO:0000028 ... P0A7U3 39300229
    914176 8yur:T (2.47) BS01 rna N/A GO:0000028 ... P0A7U7 39300229
    914177 8yur:U (2.47) BS01 rna N/A GO:0000028 ... P68679 39300229
    914178 8yur:c (2.47) BS01 rna N/A GO:0000027 ... P60422 39300229
    914179 8yur:d (2.47) BS01 rna N/A GO:0000027 ... P60438 39300229
    914180 8yur:e (2.47) BS01 rna N/A GO:0001070 ... P60723 39300229
    914181 8yur:f (2.47) BS01 rna N/A GO:0000027 ... P62399 39300229
    914182 8yur:f (2.47) BS02 rna N/A GO:0000027 ... P62399 39300229
    914183 8yur:f (2.47) BS03 rna N/A GO:0000027 ... P62399 39300229
    914184 8yur:g (2.47) BS01 rna N/A GO:0000027 ... P0AG55 39300229
    914185 8yur:h (2.47) BS01 rna N/A GO:0002181 ... P0A7R1 39300229
    914186 8yur:i (2.47) BS01 rna N/A GO:0002181 ... P0AA10 39300229
    914187 8yur:j (2.47) BS01 rna N/A GO:0002181 ... P0ADY3 39300229
    914188 8yur:j (2.47) BS02 rna N/A GO:0002181 ... P0ADY3 39300229
    914189 8yur:k (2.47) BS01 rna N/A GO:0002181 ... P02413 39300229
    914190 8yur:l (2.47) BS01 rna N/A GO:0000027 ... P0ADY7 39300229
    914191 8yur:l (2.47) BS02 rna N/A GO:0000027 ... P0ADY7 39300229
    914192 8yur:l (2.47) BS03 rna N/A GO:0000027 ... P0ADY7 39300229
    914193 8yur:m (2.47) BS01 rna N/A GO:0000027 ... P0AG44 39300229
    914194 8yur:n (2.47) BS01 rna N/A GO:0002181 ... P0C018 39300229
    914195 8yur:n (2.47) BS02 rna N/A GO:0002181 ... P0C018 39300229
    914196 8yur:o (2.47) BS01 rna N/A GO:0000027 ... P0A7K6 39300229
    914197 8yur:o (2.47) BS02 rna N/A GO:0000027 ... P0A7K6 39300229
    914198 8yur:p (2.47) BS01 rna N/A GO:0000027 ... P0A7L3 39300229
    914199 8yur:q (2.47) BS01 rna N/A GO:0002181 ... P0AG48 39300229
    914200 8yur:r (2.47) BS01 rna N/A GO:0002181 ... P61175 39300229

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).