SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    914401 8yyk:D (3.2) BS01 MN N/A N/A Q5HPR6 39742998
    914402 8yyn:A (1.9) BS01 XYP 3.2.1.8 GO:0004553 ... I3VTR8 N/A
    914403 8yyn:B (1.9) BS01 XYP 3.2.1.8 GO:0004553 ... I3VTR8 N/A
    914404 8yyo:A (1.7) BS01 XYP 3.2.1.8 GO:0004553 ... I3VTR8 N/A
    914405 8yyo:B (1.7) BS01 XYP 3.2.1.8 GO:0004553 ... I3VTR8 N/A
    914406 8yyp:A (2.6) BS01 ADE N/A N/A A0A2H5B8Z8 39508763
    914407 8yyp:A (2.6) BS02 HEM N/A N/A A0A2H5B8Z8 39508763
    914408 8yyp:B (2.6) BS01 ADE N/A N/A A0A2H5B8Z8 39508763
    914409 8yyp:B (2.6) BS02 HEM N/A N/A A0A2H5B8Z8 39508763
    914410 8yyp:B (2.6) BS03 UYM N/A N/A A0A2H5B8Z8 39508763
    914411 8yyq:A (1.95) BS01 A1L0G ? GO:0000166 ... A0A0F7R6G7 38805007
    914412 8yyr:A (1.8) BS01 A1L0H ? GO:0000166 ... A0A0F7R6G7 38805007
    914413 8yz8:A (2.86) BS01 HEM N/A N/A A0A2H5B8Z8 39508763
    914414 8yz8:A (2.86) BS02 ADE N/A N/A A0A2H5B8Z8 39508763
    914415 8yz8:B (2.86) BS01 HEM N/A N/A A0A2H5B8Z8 39508763
    914416 8yz8:B (2.86) BS02 ADE N/A N/A A0A2H5B8Z8 39508763
    914417 8yza:A (2.0) BS01 UYM N/A N/A A0A2H5B8Z8 39508763
    914418 8yza:A (2.0) BS02 HEM N/A N/A A0A2H5B8Z8 39508763
    914419 8yzi:B (3.05) BS01 ZN N/A GO:0001525 ... P79143 N/A
    914420 8yzi:D (3.05) BS01 ZN N/A GO:0001525 ... P79143 N/A
    914421 8yzr:A (1.8) BS01 peptide N/A N/A A0A143Y4R2 N/A
    914422 8yzs:A (2.31) BS01 dna N/A GO:0003677 ... Q96RE7 39225042
    914423 8yzs:A (2.31) BS02 dna N/A GO:0003677 ... Q96RE7 39225042
    914424 8yzs:B (2.31) BS01 dna N/A GO:0003677 ... Q96RE7 39225042
    914425 8yzs:B (2.31) BS02 dna N/A GO:0003677 ... Q96RE7 39225042
    914426 8yzt:A (2.58) BS01 dna N/A GO:0003677 ... Q8N9N5 39225042
    914427 8yzt:C (2.58) BS01 dna N/A GO:0003677 ... Q8N9N5 39225042
    914428 8yzt:C (2.58) BS02 dna N/A GO:0003677 ... Q8N9N5 39225042
    914429 8yzt:D (2.58) BS01 dna N/A GO:0003677 ... Q8N9N5 39225042
    914430 8yzt:D (2.58) BS02 dna N/A GO:0003677 ... Q8N9N5 39225042
    914431 8yzw:A (2.36) BS01 peptide N/A N/A A0A143Y4R2 N/A
    914432 8yzw:D (2.36) BS01 peptide N/A N/A A0A143Y4R2 N/A
    914433 8yzz:A (1.88) BS01 peptide N/A N/A A0A143Y4R2 N/A
    914434 8z02:A (2.32) BS01 COA N/A N/A N/A 39642882
    914435 8z02:A (2.32) BS02 PO4 N/A N/A N/A 39642882
    914436 8z03:A (1.99) BS01 COA N/A N/A N/A 39642882
    914437 8z03:A (1.99) BS02 PO4 N/A N/A N/A 39642882
    914438 8z05:A (1.96) BS01 peptide N/A N/A A0A140T955 N/A
    914439 8z06:A (2.39) BS01 peptide N/A N/A A0A143Y4R2 N/A
    914440 8z07:A (2.7) BS01 peptide N/A N/A A0A143Y4R2 N/A
    914441 8z08:C (2.01) BS01 peptide N/A N/A A0A143Y4R2 N/A
    914442 8z0f:A (3.27) BS01 ATP N/A GO:0000038 ... P28288 N/A
    914443 8z0f:A (3.27) BS02 ATP N/A GO:0000038 ... P28288 N/A
    914444 8z0f:B (3.27) BS01 ATP N/A GO:0000038 ... P28288 N/A
    914445 8z0f:B (3.27) BS02 ATP N/A GO:0000038 ... P28288 N/A
    914446 8z0g:A (2.65) BS01 ILE N/A N/A P0AD96 39400357
    914447 8z0h:A (1.72) BS01 peptide N/A N/A O46789 N/A
    914448 8z0h:D (1.72) BS01 peptide N/A N/A O46789 N/A
    914449 8z0h:G (1.72) BS01 peptide N/A N/A O46789 N/A
    914450 8z0h:J (1.72) BS01 peptide N/A N/A O46789 N/A
    914451 8z0k:A (2.51) BS01 dna N/A N/A A0A1K1P0W7 39251884
    914452 8z0k:A (2.51) BS02 rna N/A N/A A0A1K1P0W7 39251884
    914453 8z0k:B (2.51) BS01 dna N/A N/A A0A1K1P0W7 39251884
    914454 8z0k:B (2.51) BS02 rna N/A N/A A0A1K1P0W7 39251884
    914455 8z0k:C (2.51) BS01 dna N/A N/A A0A1K1P0W7 39251884
    914456 8z0k:C (2.51) BS02 rna N/A N/A A0A1K1P0W7 39251884
    914457 8z0k:D (2.51) BS01 dna N/A N/A A0A1K1P0W7 39251884
    914458 8z0k:D (2.51) BS02 rna N/A N/A A0A1K1P0W7 39251884
    914459 8z0k:E (2.51) BS01 dna N/A N/A A0A1K1NY43 39251884
    914460 8z0k:E (2.51) BS02 rna N/A N/A A0A1K1NY43 39251884
    914461 8z0k:F (2.51) BS01 dna N/A GO:0004519 ... A0A1K1NYH3 39251884
    914462 8z0k:F (2.51) BS02 dna N/A GO:0004519 ... A0A1K1NYH3 39251884
    914463 8z0k:F (2.51) BS03 rna N/A GO:0004519 ... A0A1K1NYH3 39251884
    914464 8z0k:G (2.51) BS01 dna N/A N/A A0A1K1P0W7 39251884
    914465 8z0k:G (2.51) BS02 rna N/A N/A A0A1K1P0W7 39251884
    914466 8z0k:H (2.51) BS01 dna N/A N/A A0A1K1P0W7 39251884
    914467 8z0k:H (2.51) BS02 rna N/A N/A A0A1K1P0W7 39251884
    914468 8z0k:M (2.51) BS01 rna N/A N/A A0A1K1NXL9 39251884
    914469 8z0l:A (2.57) BS01 dna N/A N/A A0A1K1P0W7 39251884
    914470 8z0l:A (2.57) BS02 rna N/A N/A A0A1K1P0W7 39251884
    914471 8z0l:B (2.57) BS01 dna N/A N/A A0A1K1P0W7 39251884
    914472 8z0l:B (2.57) BS02 rna N/A N/A A0A1K1P0W7 39251884
    914473 8z0l:C (2.57) BS01 dna N/A N/A A0A1K1P0W7 39251884
    914474 8z0l:C (2.57) BS02 rna N/A N/A A0A1K1P0W7 39251884
    914475 8z0l:D (2.57) BS01 dna N/A N/A A0A1K1P0W7 39251884
    914476 8z0l:D (2.57) BS02 rna N/A N/A A0A1K1P0W7 39251884
    914477 8z0l:E (2.57) BS01 dna N/A N/A A0A1K1NY43 39251884
    914478 8z0l:E (2.57) BS02 rna N/A N/A A0A1K1NY43 39251884
    914479 8z0l:F (2.57) BS01 dna N/A GO:0004519 ... A0A1K1NYH3 39251884
    914480 8z0l:F (2.57) BS02 dna N/A GO:0004519 ... A0A1K1NYH3 39251884
    914481 8z0l:F (2.57) BS03 rna N/A GO:0004519 ... A0A1K1NYH3 39251884
    914482 8z0l:G (2.57) BS01 dna N/A N/A A0A1K1P0W7 39251884
    914483 8z0l:G (2.57) BS02 rna N/A N/A A0A1K1P0W7 39251884
    914484 8z0l:H (2.57) BS01 rna N/A N/A A0A1K1P0W7 39251884
    914485 8z0l:M (2.57) BS01 rna N/A N/A A0A1K1NXL9 39251884
    914486 8z0o:A (3.2) BS01 UDP N/A GO:0004100 ... G4Z2L3 39519219
    914487 8z0o:B (3.2) BS01 UDP N/A GO:0004100 ... G4Z2L3 39519219
    914488 8z0p:A (3.1) BS01 ZN N/A GO:0003723 ... Q9BQ52 39494506
    914489 8z10:A (2.35) BS01 PRO ? GO:0007155 ... P35222 N/A
    914490 8z11:A (2.74) BS01 CLA N/A N/A N/A 39642204
    914491 8z11:A (2.74) BS02 CLA N/A N/A N/A 39642204
    914492 8z11:A (2.74) BS03 CLA N/A N/A N/A 39642204
    914493 8z11:A (2.74) BS04 CLA N/A N/A N/A 39642204
    914494 8z11:A (2.74) BS05 CLA N/A N/A N/A 39642204
    914495 8z11:A (2.74) BS06 CLA N/A N/A N/A 39642204
    914496 8z11:A (2.74) BS07 CLA N/A N/A N/A 39642204
    914497 8z11:A (2.74) BS08 CLA N/A N/A N/A 39642204
    914498 8z11:A (2.74) BS09 CLA N/A N/A N/A 39642204
    914499 8z11:A (2.74) BS10 KC2 N/A N/A N/A 39642204
    914500 8z11:A (2.74) BS11 CLA N/A N/A N/A 39642204
    914501 8z11:A (2.74) BS12 DD6 N/A N/A N/A 39642204
    914502 8z11:A (2.74) BS13 DD6 N/A N/A N/A 39642204
    914503 8z11:A (2.74) BS14 DD6 N/A N/A N/A 39642204
    914504 8z11:A (2.74) BS15 DD6 N/A N/A N/A 39642204
    914505 8z11:A (2.74) BS16 DD6 N/A N/A N/A 39642204
    914506 8z11:B (2.74) BS01 CLA N/A N/A N/A 39642204
    914507 8z11:B (2.74) BS02 CLA N/A N/A N/A 39642204
    914508 8z11:B (2.74) BS03 CLA N/A N/A N/A 39642204
    914509 8z11:B (2.74) BS04 CLA N/A N/A N/A 39642204
    914510 8z11:B (2.74) BS05 CLA N/A N/A N/A 39642204
    914511 8z11:B (2.74) BS06 DD6 N/A N/A N/A 39642204
    914512 8z11:B (2.74) BS07 CLA N/A N/A N/A 39642204
    914513 8z11:B (2.74) BS08 CLA N/A N/A N/A 39642204
    914514 8z11:C (2.74) BS01 CLA N/A N/A N/A 39642204
    914515 8z11:C (2.74) BS02 KC2 N/A N/A N/A 39642204
    914516 8z11:C (2.74) BS03 CLA N/A N/A N/A 39642204
    914517 8z11:C (2.74) BS04 CLA N/A N/A N/A 39642204
    914518 8z11:C (2.74) BS05 CLA N/A N/A N/A 39642204
    914519 8z11:C (2.74) BS06 CLA N/A N/A N/A 39642204
    914520 8z11:C (2.74) BS07 CLA N/A N/A N/A 39642204
    914521 8z11:C (2.74) BS08 CLA N/A N/A N/A 39642204
    914522 8z11:C (2.74) BS09 DD6 N/A N/A N/A 39642204
    914523 8z11:C (2.74) BS10 A86 N/A N/A N/A 39642204
    914524 8z11:C (2.74) BS11 A86 N/A N/A N/A 39642204
    914525 8z11:C (2.74) BS12 CLA N/A N/A N/A 39642204
    914526 8z11:C (2.74) BS13 CLA N/A N/A N/A 39642204
    914527 8z11:C (2.74) BS14 CLA N/A N/A N/A 39642204
    914528 8z11:D (2.74) BS01 CLA N/A N/A N/A 39642204
    914529 8z11:D (2.74) BS02 DD6 N/A N/A N/A 39642204
    914530 8z11:D (2.74) BS03 CLA N/A N/A N/A 39642204
    914531 8z11:D (2.74) BS04 CLA N/A N/A N/A 39642204
    914532 8z11:D (2.74) BS05 CLA N/A N/A N/A 39642204
    914533 8z11:D (2.74) BS06 CLA N/A N/A N/A 39642204
    914534 8z11:D (2.74) BS07 CLA N/A N/A N/A 39642204
    914535 8z11:D (2.74) BS08 CLA N/A N/A N/A 39642204
    914536 8z11:D (2.74) BS09 CLA N/A N/A N/A 39642204
    914537 8z11:D (2.74) BS10 CLA N/A N/A N/A 39642204
    914538 8z11:D (2.74) BS11 CLA N/A N/A N/A 39642204
    914539 8z11:D (2.74) BS12 CLA N/A N/A N/A 39642204
    914540 8z11:D (2.74) BS13 CLA N/A N/A N/A 39642204
    914541 8z11:D (2.74) BS14 CLA N/A N/A N/A 39642204
    914542 8z11:D (2.74) BS15 DD6 N/A N/A N/A 39642204
    914543 8z11:D (2.74) BS16 DD6 N/A N/A N/A 39642204
    914544 8z11:D (2.74) BS17 DD6 N/A N/A N/A 39642204
    914545 8z11:D (2.74) BS18 DD6 N/A N/A N/A 39642204
    914546 8z11:D (2.74) BS19 CLA N/A N/A N/A 39642204
    914547 8z11:D (2.74) BS20 DD6 N/A N/A N/A 39642204
    914548 8z11:E (2.74) BS01 CLA N/A N/A N/A 39642204
    914549 8z11:E (2.74) BS02 DD6 N/A N/A N/A 39642204
    914550 8z11:E (2.74) BS03 A86 N/A N/A N/A 39642204
    914551 8z11:E (2.74) BS04 CLA N/A N/A N/A 39642204
    914552 8z11:E (2.74) BS05 CLA N/A N/A N/A 39642204
    914553 8z11:E (2.74) BS06 CLA N/A N/A N/A 39642204
    914554 8z11:E (2.74) BS07 CLA N/A N/A N/A 39642204
    914555 8z11:E (2.74) BS08 CLA N/A N/A N/A 39642204
    914556 8z11:E (2.74) BS09 CLA N/A N/A N/A 39642204
    914557 8z11:E (2.74) BS10 CLA N/A N/A N/A 39642204
    914558 8z11:E (2.74) BS11 CLA N/A N/A N/A 39642204
    914559 8z11:E (2.74) BS12 CLA N/A N/A N/A 39642204
    914560 8z11:E (2.74) BS13 CLA N/A N/A N/A 39642204
    914561 8z11:E (2.74) BS14 KC2 N/A N/A N/A 39642204
    914562 8z11:E (2.74) BS15 CLA N/A N/A N/A 39642204
    914563 8z11:E (2.74) BS16 CLA N/A N/A N/A 39642204
    914564 8z11:E (2.74) BS17 DD6 N/A N/A N/A 39642204
    914565 8z11:E (2.74) BS18 DD6 N/A N/A N/A 39642204
    914566 8z11:E (2.74) BS19 DD6 N/A N/A N/A 39642204
    914567 8z11:E (2.74) BS20 DD6 N/A N/A N/A 39642204
    914568 8z11:F (2.74) BS01 CLA N/A N/A N/A 39642204
    914569 8z11:F (2.74) BS02 KC2 N/A N/A N/A 39642204
    914570 8z11:F (2.74) BS03 CLA N/A N/A N/A 39642204
    914571 8z11:F (2.74) BS04 CLA N/A N/A N/A 39642204
    914572 8z11:F (2.74) BS05 CLA N/A N/A N/A 39642204
    914573 8z11:F (2.74) BS06 CLA N/A N/A N/A 39642204
    914574 8z11:F (2.74) BS07 CLA N/A N/A N/A 39642204
    914575 8z11:F (2.74) BS08 CLA N/A N/A N/A 39642204
    914576 8z11:F (2.74) BS09 CLA N/A N/A N/A 39642204
    914577 8z11:F (2.74) BS10 KC2 N/A N/A N/A 39642204
    914578 8z11:F (2.74) BS11 CLA N/A N/A N/A 39642204
    914579 8z11:F (2.74) BS12 A86 N/A N/A N/A 39642204
    914580 8z11:F (2.74) BS13 A86 N/A N/A N/A 39642204
    914581 8z11:F (2.74) BS14 DD6 N/A N/A N/A 39642204
    914582 8z11:F (2.74) BS15 DD6 N/A N/A N/A 39642204
    914583 8z11:F (2.74) BS16 DD6 N/A N/A N/A 39642204
    914584 8z11:F (2.74) BS17 CLA N/A N/A N/A 39642204
    914585 8z11:F (2.74) BS18 CLA N/A N/A N/A 39642204
    914586 8z11:G (2.74) BS01 CLA N/A N/A N/A 39642204
    914587 8z11:G (2.74) BS02 KC2 N/A N/A N/A 39642204
    914588 8z11:G (2.74) BS03 CLA N/A N/A N/A 39642204
    914589 8z11:G (2.74) BS04 CLA N/A N/A N/A 39642204
    914590 8z11:G (2.74) BS05 CLA N/A N/A N/A 39642204
    914591 8z11:G (2.74) BS06 CLA N/A N/A N/A 39642204
    914592 8z11:G (2.74) BS07 CLA N/A N/A N/A 39642204
    914593 8z11:G (2.74) BS08 CLA N/A N/A N/A 39642204
    914594 8z11:G (2.74) BS09 KC2 N/A N/A N/A 39642204
    914595 8z11:G (2.74) BS10 A86 N/A N/A N/A 39642204
    914596 8z11:G (2.74) BS11 DD6 N/A N/A N/A 39642204
    914597 8z11:H (2.74) BS01 CLA N/A N/A N/A 39642204
    914598 8z11:H (2.74) BS02 A86 N/A N/A N/A 39642204
    914599 8z11:H (2.74) BS03 CLA N/A N/A N/A 39642204
    914600 8z11:H (2.74) BS04 CLA N/A N/A N/A 39642204

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).