SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    915601 8xbo:A (2.53) BS02 MG N/A GO:0000287 ... P20906 N/A
    915602 8xbp:A (1.99) BS01 ACO N/A GO:0005737 ... Q9ZV05 N/A
    915603 8xbp:A (1.99) BS02 CA N/A GO:0005737 ... Q9ZV05 N/A
    915604 8xbp:A (1.99) BS03 CA N/A GO:0005737 ... Q9ZV05 N/A
    915605 8xbp:Q (1.99) BS01 CA N/A GO:0005737 ... Q9ZV05 N/A
    915606 8xbp:Q (1.99) BS02 ACO N/A GO:0005737 ... Q9ZV05 N/A
    915607 8xbp:Q (1.99) BS03 CA N/A GO:0005737 ... Q9ZV05 N/A
    915608 8xbq:A (2.05) BS01 TPP N/A GO:0000287 ... P20906 N/A
    915609 8xbq:A (2.05) BS02 MG N/A GO:0000287 ... P20906 N/A
    915610 8xbr:A (1.92) BS01 TPP N/A GO:0000287 ... P20906 N/A
    915611 8xbr:A (1.92) BS02 MG N/A GO:0000287 ... P20906 N/A
    915612 8xbs:A (2.21) BS01 ZN ? GO:0003725 ... Q9GZC8 38742627
    915613 8xbs:A (2.21) BS02 CLR ? GO:0003725 ... Q9GZC8 38742627
    915614 8xbs:A (2.21) BS03 CLR ? GO:0003725 ... Q9GZC8 38742627
    915615 8xbs:A (2.21) BS04 CLR ? GO:0003725 ... Q9GZC8 38742627
    915616 8xbs:B (2.21) BS01 ZN ? GO:0003725 ... Q9GZC8 38742627
    915617 8xbs:B (2.21) BS02 CLR ? GO:0003725 ... Q9GZC8 38742627
    915618 8xbs:B (2.21) BS03 CLR ? GO:0003725 ... Q9GZC8 38742627
    915619 8xbs:B (2.21) BS04 CLR ? GO:0003725 ... Q9GZC8 38742627
    915620 8xbt:A (4.12) BS01 dna ? GO:0000786 ... P68431 38509361
    915621 8xbt:A (4.12) BS02 dna ? GO:0000786 ... P68431 38509361
    915622 8xbt:B (4.12) BS01 dna ? GO:0000781 ... P62805 38509361
    915623 8xbt:B (4.12) BS02 dna ? GO:0000781 ... P62805 38509361
    915624 8xbt:C (4.12) BS01 dna ? GO:0000786 ... P04908 38509361
    915625 8xbt:C (4.12) BS02 dna ? GO:0000786 ... P04908 38509361
    915626 8xbt:D (4.12) BS01 dna ? GO:0000786 ... P06899 38509361
    915627 8xbt:D (4.12) BS02 dna ? GO:0000786 ... P06899 38509361
    915628 8xbt:E (4.12) BS01 dna ? GO:0000786 ... P68431 38509361
    915629 8xbt:E (4.12) BS02 dna ? GO:0000786 ... P68431 38509361
    915630 8xbt:F (4.12) BS01 dna ? GO:0000781 ... P62805 38509361
    915631 8xbt:F (4.12) BS02 dna ? GO:0000781 ... P62805 38509361
    915632 8xbt:G (4.12) BS01 dna ? GO:0000786 ... P04908 38509361
    915633 8xbt:G (4.12) BS02 dna ? GO:0000786 ... P04908 38509361
    915634 8xbt:H (4.12) BS01 dna ? GO:0000786 ... P06899 38509361
    915635 8xbt:H (4.12) BS02 dna ? GO:0000786 ... P06899 38509361
    915636 8xbt:O (4.12) BS01 dna ? GO:0000150 ... Q06609 38509361
    915637 8xbu:A (4.24) BS01 dna ? GO:0000786 ... P68431 38509361
    915638 8xbu:A (4.24) BS02 dna ? GO:0000786 ... P68431 38509361
    915639 8xbu:B (4.24) BS01 dna ? GO:0000781 ... P62805 38509361
    915640 8xbu:B (4.24) BS02 dna ? GO:0000781 ... P62805 38509361
    915641 8xbu:C (4.24) BS01 dna ? GO:0000786 ... P04908 38509361
    915642 8xbu:C (4.24) BS02 dna ? GO:0000786 ... P04908 38509361
    915643 8xbu:D (4.24) BS01 dna ? GO:0000786 ... P06899 38509361
    915644 8xbu:D (4.24) BS02 dna ? GO:0000786 ... P06899 38509361
    915645 8xbu:E (4.24) BS01 dna ? GO:0000786 ... P68431 38509361
    915646 8xbu:E (4.24) BS02 dna ? GO:0000786 ... P68431 38509361
    915647 8xbu:F (4.24) BS01 dna ? GO:0000781 ... P62805 38509361
    915648 8xbu:F (4.24) BS02 dna ? GO:0000781 ... P62805 38509361
    915649 8xbu:G (4.24) BS01 dna ? GO:0000786 ... P04908 38509361
    915650 8xbu:G (4.24) BS02 dna ? GO:0000786 ... P04908 38509361
    915651 8xbu:H (4.24) BS01 dna ? GO:0000786 ... P06899 38509361
    915652 8xbu:H (4.24) BS02 dna ? GO:0000786 ... P06899 38509361
    915653 8xbu:L (4.24) BS01 dna ? GO:0000150 ... Q06609 38509361
    915654 8xbu:M (4.24) BS01 dna ? GO:0000150 ... Q06609 38509361
    915655 8xbu:R (4.24) BS01 dna ? GO:0000150 ... Q06609 38509361
    915656 8xbw:E (2.89) BS01 dna ? GO:0000786 ... P68431 38509361
    915657 8xbw:F (2.89) BS01 dna ? GO:0000781 ... P62805 38509361
    915658 8xc1:A (2.21) BS01 rna ? GO:0003725 ... Q9GZC8 38742627
    915659 8xc1:A (2.21) BS02 rna ? GO:0003725 ... Q9GZC8 38742627
    915660 8xc1:A (2.21) BS03 ZN ? GO:0003725 ... Q9GZC8 38742627
    915661 8xc1:A (2.21) BS04 CLR ? GO:0003725 ... Q9GZC8 38742627
    915662 8xc1:A (2.21) BS05 CLR ? GO:0003725 ... Q9GZC8 38742627
    915663 8xc1:A (2.21) BS06 CLR ? GO:0003725 ... Q9GZC8 38742627
    915664 8xc1:B (2.21) BS01 rna ? GO:0003725 ... Q9GZC8 38742627
    915665 8xc1:B (2.21) BS02 rna ? GO:0003725 ... Q9GZC8 38742627
    915666 8xc1:B (2.21) BS03 ZN ? GO:0003725 ... Q9GZC8 38742627
    915667 8xc1:B (2.21) BS04 CLR ? GO:0003725 ... Q9GZC8 38742627
    915668 8xc1:B (2.21) BS05 CLR ? GO:0003725 ... Q9GZC8 38742627
    915669 8xc1:B (2.21) BS06 CLR ? GO:0003725 ... Q9GZC8 38742627
    915670 8xc2:A (1.5) BS01 HEM N/A GO:0004601 ... P02185 N/A
    915671 8xc2:A (1.5) BS02 Y6C N/A GO:0004601 ... P02185 N/A
    915672 8xc2:A (1.5) BS03 Y6C N/A GO:0004601 ... P02185 N/A
    915673 8xc3:A (1.79) BS01 CO N/A N/A B6U9L0 39133859
    915674 8xc3:A (1.79) BS02 AKG N/A N/A B6U9L0 39133859
    915675 8xc3:B (1.79) BS01 CO N/A N/A B6U9L0 39133859
    915676 8xc3:B (1.79) BS02 AKG N/A N/A B6U9L0 39133859
    915677 8xc3:B (1.79) BS03 92X N/A N/A B6U9L0 39133859
    915678 8xc4:B (3.24) BS01 FUC ? GO:0019031 ... Q4VCP5 38773072
    915679 8xc5:B (3.5) BS01 peptide N/A N/A P55259 40550004
    915680 8xc5:C (3.5) BS01 peptide N/A N/A P55259 40550004
    915681 8xc9:A (1.89) BS01 GLC N/A GO:0004553 ... A0A1H4DB11 N/A
    915682 8xc9:A (1.89) BS02 AC1 N/A GO:0004553 ... A0A1H4DB11 N/A
    915683 8xc9:B (1.89) BS01 GLC N/A GO:0004553 ... A0A1H4DB11 N/A
    915684 8xc9:B (1.89) BS02 AC1 N/A GO:0004553 ... A0A1H4DB11 N/A
    915685 8xca:A (3.1) BS01 rna N/A N/A N/A 39516663
    915686 8xca:A (3.1) BS02 dna N/A N/A N/A 39516663
    915687 8xca:A (3.1) BS03 dna N/A N/A N/A 39516663
    915688 8xcb:A (1.83) BS01 ZN N/A GO:0000976 ... P04637 N/A
    915689 8xcb:A (1.83) BS02 A1LUZ N/A GO:0000976 ... P04637 N/A
    915690 8xcb:B (1.83) BS01 A1LUZ N/A GO:0000976 ... P04637 N/A
    915691 8xcb:B (1.83) BS02 ZN N/A GO:0000976 ... P04637 N/A
    915692 8xcb:C (1.83) BS01 ZN N/A GO:0000976 ... P04637 N/A
    915693 8xcb:C (1.83) BS02 A1LUZ N/A GO:0000976 ... P04637 N/A
    915694 8xcb:D (1.83) BS01 A1LUZ N/A GO:0000976 ... P04637 N/A
    915695 8xcb:D (1.83) BS02 ZN N/A GO:0000976 ... P04637 N/A
    915696 8xcc:A (3.2) BS01 rna N/A N/A N/A 39516663
    915697 8xcc:A (3.2) BS02 dna N/A N/A N/A 39516663
    915698 8xcc:A (3.2) BS03 dna N/A N/A N/A 39516663
    915699 8xcd:A (3.49) BS01 TCH N/A GO:0005886 ... G7PAR4 39455604
    915700 8xcd:A (3.49) BS02 TCH N/A GO:0005886 ... G7PAR4 39455604
    915701 8xce:A (2.0) BS01 ZN N/A GO:0000976 ... P04637 N/A
    915702 8xce:B (2.0) BS01 ZN N/A GO:0000976 ... P04637 N/A
    915703 8xce:C (2.0) BS01 ZN N/A GO:0000976 ... P04637 N/A
    915704 8xce:D (2.0) BS01 ZN N/A GO:0000976 ... P04637 N/A
    915705 8xce:D (2.0) BS02 A1LU0 N/A GO:0000976 ... P04637 N/A
    915706 8xcg:L (3.46) BS01 SF4 ? GO:0030430 ... P03738 38760367
    915707 8xcg:N (3.46) BS01 SF4 ? GO:0030430 ... P03738 38760367
    915708 8xcg:f (3.46) BS01 SF4 ? GO:0030430 ... P03738 38760367
    915709 8xch:A (3.4) BS01 rna N/A GO:0003723 ... P0DTD1 41130208
    915710 8xch:A (3.4) BS02 rna N/A GO:0003723 ... P0DTD1 41130208
    915711 8xch:A (3.4) BS03 ZN N/A GO:0003723 ... P0DTD1 41130208
    915712 8xch:A (3.4) BS04 ZN N/A GO:0003723 ... P0DTD1 41130208
    915713 8xch:B (3.4) BS01 rna N/A GO:0004197 ... P0DTD1 41130208
    915714 8xch:D (3.4) BS01 rna N/A GO:0004197 ... P0DTD1 41130208
    915715 8xch:D (3.4) BS02 rna N/A GO:0004197 ... P0DTD1 41130208
    915716 8xch:E (3.4) BS01 rna N/A GO:0004386 ... P0DTD1 41130208
    915717 8xch:E (3.4) BS02 rna N/A GO:0004386 ... P0DTD1 41130208
    915718 8xch:E (3.4) BS03 ZN N/A GO:0004386 ... P0DTD1 41130208
    915719 8xch:E (3.4) BS04 ZN N/A GO:0004386 ... P0DTD1 41130208
    915720 8xch:E (3.4) BS05 ZN N/A GO:0004386 ... P0DTD1 41130208
    915721 8xch:E (3.4) BS06 ADP N/A GO:0004386 ... P0DTD1 41130208
    915722 8xch:F (3.4) BS01 ZN N/A GO:0004386 ... P0DTD1 41130208
    915723 8xch:F (3.4) BS02 ZN N/A GO:0004386 ... P0DTD1 41130208
    915724 8xch:F (3.4) BS03 ZN N/A GO:0004386 ... P0DTD1 41130208
    915725 8xch:I (3.4) BS01 rna N/A GO:0003723 ... P0DTD1 41130208
    915726 8xch:I (3.4) BS02 rna N/A GO:0003723 ... P0DTD1 41130208
    915727 8xch:I (3.4) BS03 ZN N/A GO:0003723 ... P0DTD1 41130208
    915728 8xch:I (3.4) BS04 ZN N/A GO:0003723 ... P0DTD1 41130208
    915729 8xch:I (3.4) BS05 MG N/A GO:0003723 ... P0DTD1 41130208
    915730 8xch:J (3.4) BS01 rna N/A GO:0004197 ... P0DTD1 41130208
    915731 8xch:L (3.4) BS01 rna N/A GO:0004197 ... P0DTD1 41130208
    915732 8xch:M (3.4) BS01 ZN N/A GO:0004386 ... P0DTD1 41130208
    915733 8xch:M (3.4) BS02 ZN N/A GO:0004386 ... P0DTD1 41130208
    915734 8xch:M (3.4) BS03 ZN N/A GO:0004386 ... P0DTD1 41130208
    915735 8xch:N (3.4) BS01 rna N/A GO:0004386 ... P0DTD1 41130208
    915736 8xch:N (3.4) BS02 rna N/A GO:0004386 ... P0DTD1 41130208
    915737 8xch:N (3.4) BS03 ZN N/A GO:0004386 ... P0DTD1 41130208
    915738 8xch:N (3.4) BS04 ZN N/A GO:0004386 ... P0DTD1 41130208
    915739 8xch:N (3.4) BS05 ZN N/A GO:0004386 ... P0DTD1 41130208
    915740 8xch:Q (3.4) BS01 rna N/A GO:0003723 ... P0DTD1 41130208
    915741 8xch:Q (3.4) BS02 rna N/A GO:0003723 ... P0DTD1 41130208
    915742 8xch:Q (3.4) BS03 ZN N/A GO:0003723 ... P0DTD1 41130208
    915743 8xch:Q (3.4) BS04 ZN N/A GO:0003723 ... P0DTD1 41130208
    915744 8xch:T (3.4) BS01 rna N/A GO:0004197 ... P0DTD1 41130208
    915745 8xch:T (3.4) BS02 rna N/A GO:0004197 ... P0DTD1 41130208
    915746 8xch:U (3.4) BS01 rna N/A GO:0004386 ... P0DTD1 41130208
    915747 8xch:U (3.4) BS02 ZN N/A GO:0004386 ... P0DTD1 41130208
    915748 8xch:U (3.4) BS03 ZN N/A GO:0004386 ... P0DTD1 41130208
    915749 8xch:U (3.4) BS04 ZN N/A GO:0004386 ... P0DTD1 41130208
    915750 8xch:V (3.4) BS01 rna N/A GO:0004386 ... P0DTD1 41130208
    915751 8xch:V (3.4) BS02 ZN N/A GO:0004386 ... P0DTD1 41130208
    915752 8xch:V (3.4) BS03 ZN N/A GO:0004386 ... P0DTD1 41130208
    915753 8xch:V (3.4) BS04 ZN N/A GO:0004386 ... P0DTD1 41130208
    915754 8xch:Y (3.4) BS01 rna N/A GO:0003723 ... P0DTD1 41130208
    915755 8xch:Y (3.4) BS02 rna N/A GO:0003723 ... P0DTD1 41130208
    915756 8xch:Y (3.4) BS03 ZN N/A GO:0003723 ... P0DTD1 41130208
    915757 8xch:Y (3.4) BS04 ZN N/A GO:0003723 ... P0DTD1 41130208
    915758 8xch:Y (3.4) BS05 MG N/A GO:0003723 ... P0DTD1 41130208
    915759 8xch:Z (3.4) BS01 rna N/A GO:0004197 ... P0DTD1 41130208
    915760 8xch:b (3.4) BS01 rna N/A GO:0004197 ... P0DTD1 41130208
    915761 8xch:b (3.4) BS02 rna N/A GO:0004197 ... P0DTD1 41130208
    915762 8xch:c (3.4) BS01 ZN N/A GO:0004386 ... P0DTD1 41130208
    915763 8xch:c (3.4) BS02 ZN N/A GO:0004386 ... P0DTD1 41130208
    915764 8xch:c (3.4) BS03 ZN N/A GO:0004386 ... P0DTD1 41130208
    915765 8xch:d (3.4) BS01 rna N/A GO:0004386 ... P0DTD1 41130208
    915766 8xch:d (3.4) BS02 rna N/A GO:0004386 ... P0DTD1 41130208
    915767 8xch:d (3.4) BS03 ZN N/A GO:0004386 ... P0DTD1 41130208
    915768 8xch:d (3.4) BS04 ZN N/A GO:0004386 ... P0DTD1 41130208
    915769 8xch:d (3.4) BS05 ZN N/A GO:0004386 ... P0DTD1 41130208
    915770 8xch:d (3.4) BS06 ADP N/A GO:0004386 ... P0DTD1 41130208
    915771 8xcm:A (3.08) BS01 FAD 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    915772 8xcm:A (3.08) BS02 F3S 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    915773 8xcm:C (3.08) BS01 HEC ? GO:0005506 ... M1V1V5 N/A
    915774 8xcm:C (3.08) BS02 HEC ? GO:0005506 ... M1V1V5 N/A
    915775 8xcm:C (3.08) BS03 HEC ? GO:0005506 ... M1V1V5 N/A
    915776 8xcm:C (3.08) BS04 U10 ? GO:0005506 ... M1V1V5 N/A
    915777 8xcn:A (3.02) BS01 FAD 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    915778 8xcn:A (3.02) BS02 F3S 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    915779 8xcn:C (3.02) BS01 HEC ? GO:0005506 ... M1V1V5 N/A
    915780 8xcn:C (3.02) BS02 HEC ? GO:0005506 ... M1V1V5 N/A
    915781 8xcn:C (3.02) BS03 HEC ? GO:0005506 ... M1V1V5 N/A
    915782 8xcn:C (3.02) BS04 U10 ? GO:0005506 ... M1V1V5 N/A
    915783 8xco:A (2.64) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    915784 8xcp:A (2.64) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    915785 8xcp:A (2.64) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    915786 8xcq:A (2.6) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    915787 8xcq:A (2.6) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    915788 8xcr:A (2.6) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    915789 8xcr:A (2.6) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    915790 8xcs:A (2.63) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    915791 8xcs:A (2.63) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 38750092
    915792 8xct:A (2.87) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    915793 8xcu:A (2.83) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    915794 8xcu:A (2.83) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    915795 8xcv:A (2.83) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    915796 8xcw:A (2.87) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    915797 8xcw:A (2.87) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 38750092
    915798 8xcx:A (2.83) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    915799 8xcx:A (2.83) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    915800 8xcy:A (2.91) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).