SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    915601 8z71:Sc (3.6) BS01 rna N/A GO:0000462 ... P0CX29 N/A
    915602 8z71:Sd (3.6) BS01 rna N/A GO:0000462 ... P0CX31 N/A
    915603 8z71:Se (3.6) BS01 rna N/A N/A P39938 N/A
    915604 8z71:Sf (3.6) BS01 rna N/A GO:0000028 ... P35997 N/A
    915605 8z71:Sg (3.6) BS01 rna N/A GO:0002181 ... P0CX33 N/A
    915606 8z71:T (3.6) BS01 rna N/A GO:0002181 ... P0CX82 N/A
    915607 8z71:T (3.6) BS02 rna N/A GO:0002181 ... P0CX82 N/A
    915608 8z71:U (3.6) BS01 rna N/A GO:0002181 ... P0CX23 N/A
    915609 8z71:U (3.6) BS02 rna N/A GO:0002181 ... P0CX23 N/A
    915610 8z71:V (3.6) BS01 rna N/A GO:0002181 ... Q02753 N/A
    915611 8z71:V (3.6) BS02 rna N/A GO:0002181 ... Q02753 N/A
    915612 8z71:W (3.6) BS01 rna N/A N/A P05749 N/A
    915613 8z71:X (3.6) BS01 rna N/A GO:0002181 ... P0CX41 N/A
    915614 8z71:Y (3.6) BS01 rna N/A N/A P04449 N/A
    915615 8z71:Z (3.6) BS01 rna N/A N/A P04456 N/A
    915616 8z71:Z (3.6) BS02 rna N/A N/A P04456 N/A
    915617 8z71:a (3.6) BS01 rna N/A GO:0002181 ... P05743 N/A
    915618 8z71:a (3.6) BS02 rna N/A GO:0002181 ... P05743 N/A
    915619 8z71:b (3.6) BS01 rna N/A GO:0002181 ... P0C2H6 N/A
    915620 8z71:c (3.6) BS01 rna N/A GO:0002181 ... P02406 N/A
    915621 8z71:d (3.6) BS01 rna N/A GO:0002181 ... P05747 N/A
    915622 8z71:e (3.6) BS01 rna N/A GO:0002181 ... P14120 N/A
    915623 8z71:f (3.6) BS01 rna N/A GO:0002181 ... P0C2H8 N/A
    915624 8z71:g (3.6) BS01 rna N/A GO:0002181 ... P38061 N/A
    915625 8z71:h (3.6) BS01 rna N/A GO:0000027 ... P05744 N/A
    915626 8z71:i (3.6) BS01 rna N/A GO:0002181 ... P87262 N/A
    915627 8z71:j (3.6) BS01 rna N/A GO:0000463 ... P0CX84 N/A
    915628 8z71:j (3.6) BS02 rna N/A GO:0000463 ... P0CX84 N/A
    915629 8z71:k (3.6) BS01 rna N/A GO:0002181 ... P05745 N/A
    915630 8z71:l (3.6) BS01 rna N/A GO:0000448 ... P49166 N/A
    915631 8z71:l (3.6) BS02 rna N/A GO:0000448 ... P49166 N/A
    915632 8z71:m (3.6) BS01 rna N/A GO:0002181 ... P49167 N/A
    915633 8z71:n (3.6) BS01 rna N/A GO:0002181 ... P04650 N/A
    915634 8z71:n (3.6) BS02 rna N/A GO:0002181 ... P04650 N/A
    915635 8z71:o (3.6) BS01 rna N/A N/A P0CH08 N/A
    915636 8z71:q (3.6) BS01 rna N/A GO:0002181 ... P0CX27 N/A
    915637 8z71:r (3.6) BS01 rna N/A GO:0002181 ... P0CX25 N/A
    915638 8z71:v (3.6) BS01 rna N/A GO:0002182 ... P16521 N/A
    915639 8z71:x (3.6) BS01 rna N/A GO:0000049 ... P68105 N/A
    915640 8z71:x (3.6) BS02 rna N/A GO:0000049 ... P68105 N/A
    915641 8z74:C (3.01) BS01 CLR N/A N/A P0ABE7
    P35414
    39747115
    915642 8z74:D (3.01) BS01 CLR N/A N/A P0ABE7
    P35414
    39747115
    915643 8z75:A (1.45) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    915644 8z75:B (1.45) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    915645 8z75:C (1.45) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    915646 8z76:A (1.8) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    915647 8z76:A (1.8) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    915648 8z76:A (1.8) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    915649 8z76:B (1.8) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    915650 8z76:B (1.8) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    915651 8z76:B (1.8) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    915652 8z76:C (1.8) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    915653 8z76:C (1.8) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    915654 8z76:C (1.8) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    915655 8z77:A (2.0) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    915656 8z77:A (2.0) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    915657 8z77:A (2.0) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    915658 8z77:B (2.0) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    915659 8z77:B (2.0) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    915660 8z77:B (2.0) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    915661 8z77:C (2.0) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    915662 8z77:C (2.0) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    915663 8z77:C (2.0) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    915664 8z79:A (2.65) BS01 dna N/A GO:0016829 ... A0A0S0N8M3 39268585
    915665 8z79:A (2.65) BS02 dna N/A GO:0016829 ... A0A0S0N8M3 39268585
    915666 8z79:A (2.65) BS03 FAD N/A GO:0016829 ... A0A0S0N8M3 39268585
    915667 8z79:B (2.65) BS01 dna N/A GO:0016829 ... A0A0S0N8M3 39268585
    915668 8z79:B (2.65) BS02 dna N/A GO:0016829 ... A0A0S0N8M3 39268585
    915669 8z79:B (2.65) BS03 dna N/A GO:0016829 ... A0A0S0N8M3 39268585
    915670 8z79:B (2.65) BS04 FAD N/A GO:0016829 ... A0A0S0N8M3 39268585
    915671 8z79:C (2.65) BS01 FAD N/A GO:0016829 ... A0A0S0N8M3 39268585
    915672 8z79:D (2.65) BS01 FAD N/A GO:0016829 ... A0A0S0N8M3 39268585
    915673 8z7c:A (1.52) BS01 ZN N/A N/A Q96KQ7 38914346
    915674 8z7c:A (1.52) BS02 ZN N/A N/A Q96KQ7 38914346
    915675 8z7c:A (1.52) BS03 ZN N/A N/A Q96KQ7 38914346
    915676 8z7c:A (1.52) BS04 ZN N/A N/A Q96KQ7 38914346
    915677 8z7c:A (1.52) BS05 SFG N/A N/A Q96KQ7 38914346
    915678 8z7c:A (1.52) BS06 A1L07 N/A N/A Q96KQ7 38914346
    915679 8z7c:B (1.52) BS01 ZN N/A N/A Q96KQ7 38914346
    915680 8z7c:B (1.52) BS02 ZN N/A N/A Q96KQ7 38914346
    915681 8z7c:B (1.52) BS03 ZN N/A N/A Q96KQ7 38914346
    915682 8z7c:B (1.52) BS04 ZN N/A N/A Q96KQ7 38914346
    915683 8z7c:B (1.52) BS05 SFG N/A N/A Q96KQ7 38914346
    915684 8z7c:B (1.52) BS06 A1L07 N/A N/A Q96KQ7 38914346
    915685 8z7d:A (1.581) BS01 ZN N/A N/A Q96KQ7 38914346
    915686 8z7d:A (1.581) BS02 ZN N/A N/A Q96KQ7 38914346
    915687 8z7d:A (1.581) BS03 ZN N/A N/A Q96KQ7 38914346
    915688 8z7d:A (1.581) BS04 ZN N/A N/A Q96KQ7 38914346
    915689 8z7d:A (1.581) BS05 SFG N/A N/A Q96KQ7 38914346
    915690 8z7d:A (1.581) BS06 A1L08 N/A N/A Q96KQ7 38914346
    915691 8z7d:B (1.581) BS01 ZN N/A N/A Q96KQ7 38914346
    915692 8z7d:B (1.581) BS02 ZN N/A N/A Q96KQ7 38914346
    915693 8z7d:B (1.581) BS03 ZN N/A N/A Q96KQ7 38914346
    915694 8z7d:B (1.581) BS04 ZN N/A N/A Q96KQ7 38914346
    915695 8z7d:B (1.581) BS05 SFG N/A N/A Q96KQ7 38914346
    915696 8z7d:B (1.581) BS06 A1L08 N/A N/A Q96KQ7 38914346
    915697 8z7e:A (1.545) BS01 ZN N/A N/A Q96KQ7 38914346
    915698 8z7e:A (1.545) BS02 ZN N/A N/A Q96KQ7 38914346
    915699 8z7e:A (1.545) BS03 ZN N/A N/A Q96KQ7 38914346
    915700 8z7e:A (1.545) BS04 ZN N/A N/A Q96KQ7 38914346
    915701 8z7e:A (1.545) BS05 SFG N/A N/A Q96KQ7 38914346
    915702 8z7e:A (1.545) BS06 A1L09 N/A N/A Q96KQ7 38914346
    915703 8z7e:B (1.545) BS01 ZN N/A N/A Q96KQ7 38914346
    915704 8z7e:B (1.545) BS02 ZN N/A N/A Q96KQ7 38914346
    915705 8z7e:B (1.545) BS03 ZN N/A N/A Q96KQ7 38914346
    915706 8z7e:B (1.545) BS04 ZN N/A N/A Q96KQ7 38914346
    915707 8z7e:B (1.545) BS05 SFG N/A N/A Q96KQ7 38914346
    915708 8z7e:B (1.545) BS06 A1L09 N/A N/A Q96KQ7 38914346
    915709 8z7s:A (3.05) BS01 VIB N/A N/A Q9BZV2 39738067
    915710 8z7t:A (3.39) BS01 UEG N/A N/A Q9BZV2 39738067
    915711 8z7u:A (3.1) BS01 2TA N/A N/A Q9BZV2 39738067
    915712 8z7v:A (3.1) BS01 A1H5C N/A N/A Q9BZV2 39738067
    915713 8z7w:A (3.09) BS01 MF8 N/A N/A Q9BZV2 39738067
    915714 8z7x:A (3.36) BS01 VIB N/A N/A Q9BZV2 39738067
    915715 8z7y:A (3.02) BS01 2TA N/A N/A Q9BZV2 39738067
    915716 8z7z:A (3.23) BS01 VIB N/A N/A O60779 39738067
    915717 8z80:B (3.7) BS01 UEG N/A N/A O60779 39738067
    915718 8z81:0 (2.2) BS01 BCL N/A N/A A1WXF9 39915441
    915719 8z81:0 (2.2) BS02 BCL N/A N/A A1WXF9 39915441
    915720 8z81:0 (2.2) BS03 BCL N/A N/A A1WXF9 39915441
    915721 8z81:0 (2.2) BS04 BCL N/A N/A A1WXF9 39915441
    915722 8z81:1 (2.2) BS01 CRT N/A N/A A1WXF8 39915441
    915723 8z81:1 (2.2) BS02 BCL N/A N/A A1WXF8 39915441
    915724 8z81:1 (2.2) BS03 BCL N/A N/A A1WXF8 39915441
    915725 8z81:1 (2.2) BS04 BCL N/A N/A A1WXF8 39915441
    915726 8z81:1 (2.2) BS05 CRT N/A N/A A1WXF8 39915441
    915727 8z81:2 (2.2) BS01 BCL N/A N/A A1WXF9 39915441
    915728 8z81:2 (2.2) BS02 BCL N/A N/A A1WXF9 39915441
    915729 8z81:2 (2.2) BS03 BCL N/A N/A A1WXF9 39915441
    915730 8z81:2 (2.2) BS04 BCL N/A N/A A1WXF9 39915441
    915731 8z81:3 (2.2) BS01 BCL N/A N/A A1WWW5 39915441
    915732 8z81:3 (2.2) BS02 BCL N/A N/A A1WWW5 39915441
    915733 8z81:3 (2.2) BS03 CRT N/A N/A A1WWW5 39915441
    915734 8z81:3 (2.2) BS04 BCL N/A N/A A1WWW5 39915441
    915735 8z81:3 (2.2) BS05 BCL N/A N/A A1WWW5 39915441
    915736 8z81:4 (2.2) BS01 BCL N/A N/A A1WWW6 39915441
    915737 8z81:4 (2.2) BS02 CRT N/A N/A A1WWW6 39915441
    915738 8z81:4 (2.2) BS03 BCL N/A N/A A1WWW6 39915441
    915739 8z81:5 (2.2) BS01 CRT N/A N/A A1WXF8 39915441
    915740 8z81:5 (2.2) BS02 BCL N/A N/A A1WXF8 39915441
    915741 8z81:5 (2.2) BS03 BCL N/A N/A A1WXF8 39915441
    915742 8z81:5 (2.2) BS04 BCL N/A N/A A1WXF8 39915441
    915743 8z81:5 (2.2) BS05 CRT N/A N/A A1WXF8 39915441
    915744 8z81:6 (2.2) BS01 BCL N/A N/A A1WXF9 39915441
    915745 8z81:6 (2.2) BS02 BCL N/A N/A A1WXF9 39915441
    915746 8z81:6 (2.2) BS03 BCL N/A N/A A1WXF9 39915441
    915747 8z81:6 (2.2) BS04 BCL N/A N/A A1WXF9 39915441
    915748 8z81:7 (2.2) BS01 BCL N/A N/A A1WWW5 39915441
    915749 8z81:7 (2.2) BS02 BCL N/A N/A A1WWW5 39915441
    915750 8z81:7 (2.2) BS03 CRT N/A N/A A1WWW5 39915441
    915751 8z81:7 (2.2) BS04 BCL N/A N/A A1WWW5 39915441
    915752 8z81:7 (2.2) BS05 BCL N/A N/A A1WWW5 39915441
    915753 8z81:8 (2.2) BS01 BCL N/A N/A A1WWW6 39915441
    915754 8z81:8 (2.2) BS02 CRT N/A N/A A1WWW6 39915441
    915755 8z81:8 (2.2) BS03 BCL N/A N/A A1WWW6 39915441
    915756 8z81:9 (2.2) BS01 CRT N/A N/A A1WXF8 39915441
    915757 8z81:9 (2.2) BS02 CRT N/A N/A A1WXF8 39915441
    915758 8z81:9 (2.2) BS03 BCL N/A N/A A1WXF8 39915441
    915759 8z81:9 (2.2) BS04 BCL N/A N/A A1WXF8 39915441
    915760 8z81:9 (2.2) BS05 BCL N/A N/A A1WXF8 39915441
    915761 8z81:A (2.2) BS01 BCL N/A N/A A1WWW5 39915441
    915762 8z81:A (2.2) BS02 CRT N/A N/A A1WWW5 39915441
    915763 8z81:A (2.2) BS03 BCL N/A N/A A1WWW5 39915441
    915764 8z81:A (2.2) BS04 BCL N/A N/A A1WWW5 39915441
    915765 8z81:B (2.2) BS01 BCL N/A N/A A1WWW6 39915441
    915766 8z81:B (2.2) BS02 CRT N/A N/A A1WWW6 39915441
    915767 8z81:B (2.2) BS03 BCL N/A N/A A1WWW6 39915441
    915768 8z81:C (2.2) BS01 CRT N/A N/A A1WXF8 39915441
    915769 8z81:C (2.2) BS02 BCL N/A N/A A1WXF8 39915441
    915770 8z81:C (2.2) BS03 BCL N/A N/A A1WXF8 39915441
    915771 8z81:C (2.2) BS04 BCL N/A N/A A1WXF8 39915441
    915772 8z81:C (2.2) BS05 CRT N/A N/A A1WXF8 39915441
    915773 8z81:D (2.2) BS01 BCL N/A N/A A1WXF9 39915441
    915774 8z81:D (2.2) BS02 BCL N/A N/A A1WXF9 39915441
    915775 8z81:D (2.2) BS03 BCL N/A N/A A1WXF9 39915441
    915776 8z81:D (2.2) BS04 BCL N/A N/A A1WXF9 39915441
    915777 8z81:E (2.2) BS01 BCL N/A N/A A1WWW5 39915441
    915778 8z81:E (2.2) BS02 BCL N/A N/A A1WWW5 39915441
    915779 8z81:E (2.2) BS03 CRT N/A N/A A1WWW5 39915441
    915780 8z81:E (2.2) BS04 BCL N/A N/A A1WWW5 39915441
    915781 8z81:E (2.2) BS05 BCL N/A N/A A1WWW5 39915441
    915782 8z81:F (2.2) BS01 BCL N/A N/A A1WWW6 39915441
    915783 8z81:F (2.2) BS02 CRT N/A N/A A1WWW6 39915441
    915784 8z81:F (2.2) BS03 BCL N/A N/A A1WWW6 39915441
    915785 8z81:G (2.2) BS01 CRT N/A N/A A1WXF8 39915441
    915786 8z81:G (2.2) BS02 BCL N/A N/A A1WXF8 39915441
    915787 8z81:G (2.2) BS03 BCL N/A N/A A1WXF8 39915441
    915788 8z81:G (2.2) BS04 BCL N/A N/A A1WXF8 39915441
    915789 8z81:G (2.2) BS05 CRT N/A N/A A1WXF8 39915441
    915790 8z81:H (2.2) BS01 BCL N/A N/A A1WXF9 39915441
    915791 8z81:H (2.2) BS02 BCL N/A N/A A1WXF9 39915441
    915792 8z81:H (2.2) BS03 BCL N/A N/A A1WXF9 39915441
    915793 8z81:H (2.2) BS04 BCL N/A N/A A1WXF9 39915441
    915794 8z81:I (2.2) BS01 BCL N/A N/A A1WWW5 39915441
    915795 8z81:I (2.2) BS02 BCL N/A N/A A1WWW5 39915441
    915796 8z81:I (2.2) BS03 CRT N/A N/A A1WWW5 39915441
    915797 8z81:I (2.2) BS04 BCL N/A N/A A1WWW5 39915441
    915798 8z81:J (2.2) BS01 BCL N/A N/A A1WWW6 39915441
    915799 8z81:J (2.2) BS02 CRT N/A N/A A1WWW6 39915441
    915800 8z81:J (2.2) BS03 BCL N/A N/A A1WWW6 39915441

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).