SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    917601 8xls:B (2.3) BS02 CLA N/A GO:0000287 ... A0T0M9 39480899
    917602 8xls:B (2.3) BS03 CLA N/A GO:0000287 ... A0T0M9 39480899
    917603 8xls:B (2.3) BS04 CLA N/A GO:0000287 ... A0T0M9 39480899
    917604 8xls:B (2.3) BS05 CLA N/A GO:0000287 ... A0T0M9 39480899
    917605 8xls:B (2.3) BS06 CLA N/A GO:0000287 ... A0T0M9 39480899
    917606 8xls:B (2.3) BS07 SF4 N/A GO:0000287 ... A0T0M9 39480899
    917607 8xls:B (2.3) BS08 CLA N/A GO:0000287 ... A0T0M9 39480899
    917608 8xls:B (2.3) BS09 CLA N/A GO:0000287 ... A0T0M9 39480899
    917609 8xls:B (2.3) BS10 CLA N/A GO:0000287 ... A0T0M9 39480899
    917610 8xls:B (2.3) BS11 CLA N/A GO:0000287 ... A0T0M9 39480899
    917611 8xls:B (2.3) BS12 CLA N/A GO:0000287 ... A0T0M9 39480899
    917612 8xls:B (2.3) BS13 CLA N/A GO:0000287 ... A0T0M9 39480899
    917613 8xls:B (2.3) BS14 CLA N/A GO:0000287 ... A0T0M9 39480899
    917614 8xls:B (2.3) BS15 CLA N/A GO:0000287 ... A0T0M9 39480899
    917615 8xls:B (2.3) BS16 CLA N/A GO:0000287 ... A0T0M9 39480899
    917616 8xls:B (2.3) BS17 CLA N/A GO:0000287 ... A0T0M9 39480899
    917617 8xls:B (2.3) BS18 CLA N/A GO:0000287 ... A0T0M9 39480899
    917618 8xls:B (2.3) BS19 CLA N/A GO:0000287 ... A0T0M9 39480899
    917619 8xls:B (2.3) BS20 CLA N/A GO:0000287 ... A0T0M9 39480899
    917620 8xls:B (2.3) BS21 CLA N/A GO:0000287 ... A0T0M9 39480899
    917621 8xls:B (2.3) BS22 CLA N/A GO:0000287 ... A0T0M9 39480899
    917622 8xls:B (2.3) BS23 CLA N/A GO:0000287 ... A0T0M9 39480899
    917623 8xls:B (2.3) BS24 CLA N/A GO:0000287 ... A0T0M9 39480899
    917624 8xls:B (2.3) BS25 CLA N/A GO:0000287 ... A0T0M9 39480899
    917625 8xls:B (2.3) BS26 CLA N/A GO:0000287 ... A0T0M9 39480899
    917626 8xls:B (2.3) BS27 CLA N/A GO:0000287 ... A0T0M9 39480899
    917627 8xls:B (2.3) BS28 CLA N/A GO:0000287 ... A0T0M9 39480899
    917628 8xls:B (2.3) BS29 CLA N/A GO:0000287 ... A0T0M9 39480899
    917629 8xls:B (2.3) BS30 CLA N/A GO:0000287 ... A0T0M9 39480899
    917630 8xls:B (2.3) BS31 CLA N/A GO:0000287 ... A0T0M9 39480899
    917631 8xls:B (2.3) BS32 CLA N/A GO:0000287 ... A0T0M9 39480899
    917632 8xls:B (2.3) BS33 CLA N/A GO:0000287 ... A0T0M9 39480899
    917633 8xls:B (2.3) BS34 CLA N/A GO:0000287 ... A0T0M9 39480899
    917634 8xls:B (2.3) BS35 CLA N/A GO:0000287 ... A0T0M9 39480899
    917635 8xls:B (2.3) BS36 CLA N/A GO:0000287 ... A0T0M9 39480899
    917636 8xls:B (2.3) BS37 CLA N/A GO:0000287 ... A0T0M9 39480899
    917637 8xls:B (2.3) BS38 CLA N/A GO:0000287 ... A0T0M9 39480899
    917638 8xls:B (2.3) BS39 CLA N/A GO:0000287 ... A0T0M9 39480899
    917639 8xls:B (2.3) BS40 CLA N/A GO:0000287 ... A0T0M9 39480899
    917640 8xls:B (2.3) BS41 CLA N/A GO:0000287 ... A0T0M9 39480899
    917641 8xls:B (2.3) BS42 CLA N/A GO:0000287 ... A0T0M9 39480899
    917642 8xls:B (2.3) BS43 CLA N/A GO:0000287 ... A0T0M9 39480899
    917643 8xls:B (2.3) BS44 CLA N/A GO:0000287 ... A0T0M9 39480899
    917644 8xls:B (2.3) BS45 PQN N/A GO:0000287 ... A0T0M9 39480899
    917645 8xls:B (2.3) BS46 CLA N/A GO:0000287 ... A0T0M9 39480899
    917646 8xls:B (2.3) BS47 CLA N/A GO:0000287 ... A0T0M9 39480899
    917647 8xls:B (2.3) BS48 CLA N/A GO:0000287 ... A0T0M9 39480899
    917648 8xls:C (2.3) BS01 SF4 N/A GO:0009055 ... B8LEV1 39480899
    917649 8xls:C (2.3) BS02 SF4 N/A GO:0009055 ... B8LEV1 39480899
    917650 8xls:F (2.3) BS01 CLA N/A GO:0009522 ... A0T0V0 39480899
    917651 8xls:F (2.3) BS02 CLA N/A GO:0009522 ... A0T0V0 39480899
    917652 8xls:F (2.3) BS03 CLA N/A GO:0009522 ... A0T0V0 39480899
    917653 8xls:F (2.3) BS04 CLA N/A GO:0009522 ... A0T0V0 39480899
    917654 8xls:F (2.3) BS05 CLA N/A GO:0009522 ... A0T0V0 39480899
    917655 8xls:F (2.3) BS06 CLA N/A GO:0009522 ... A0T0V0 39480899
    917656 8xls:F (2.3) BS07 CLA N/A GO:0009522 ... A0T0V0 39480899
    917657 8xls:I (2.3) BS01 CLA N/A GO:0009522 ... A0T0S9 39480899
    917658 8xls:I (2.3) BS02 CLA N/A GO:0009522 ... A0T0S9 39480899
    917659 8xls:I (2.3) BS03 CLA N/A GO:0009522 ... A0T0S9 39480899
    917660 8xls:J (2.3) BS01 CLA N/A GO:0009522 ... A0T0V1 39480899
    917661 8xls:J (2.3) BS02 CLA N/A GO:0009522 ... A0T0V1 39480899
    917662 8xls:J (2.3) BS03 CLA N/A GO:0009522 ... A0T0V1 39480899
    917663 8xls:J (2.3) BS04 CLA N/A GO:0009522 ... A0T0V1 39480899
    917664 8xls:J (2.3) BS05 CLA N/A GO:0009522 ... A0T0V1 39480899
    917665 8xls:J (2.3) BS06 CLA N/A GO:0009522 ... A0T0V1 39480899
    917666 8xls:J (2.3) BS07 5X6 N/A GO:0009522 ... A0T0V1 39480899
    917667 8xls:L (2.3) BS01 CLA N/A GO:0009522 ... A0T0U5 39480899
    917668 8xls:L (2.3) BS02 CLA N/A GO:0009522 ... A0T0U5 39480899
    917669 8xls:L (2.3) BS03 CLA N/A GO:0009522 ... A0T0U5 39480899
    917670 8xls:L (2.3) BS04 CLA N/A GO:0009522 ... A0T0U5 39480899
    917671 8xls:L (2.3) BS05 CLA N/A GO:0009522 ... A0T0U5 39480899
    917672 8xls:L (2.3) BS06 CLA N/A GO:0009522 ... A0T0U5 39480899
    917673 8xls:L (2.3) BS07 CLA N/A GO:0009522 ... A0T0U5 39480899
    917674 8xls:L (2.3) BS08 CLA N/A GO:0009522 ... A0T0U5 39480899
    917675 8xls:L (2.3) BS09 CLA N/A GO:0009522 ... A0T0U5 39480899
    917676 8xls:L (2.3) BS10 CLA N/A GO:0009522 ... A0T0U5 39480899
    917677 8xls:M (2.3) BS01 CLA N/A GO:0009535 ... A0T0S1 39480899
    917678 8xls:M (2.3) BS02 A86 N/A GO:0009535 ... A0T0S1 39480899
    917679 8xls:u (2.3) BS01 CLA N/A N/A N/A 39480899
    917680 8xls:u (2.3) BS02 CLA N/A N/A N/A 39480899
    917681 8xlw:A (1.49) BS01 A1LV9 N/A GO:0003868 ... P93836 N/A
    917682 8xlw:A (1.49) BS02 CO N/A GO:0003868 ... P93836 N/A
    917683 8xlx:A (1.56) BS01 A1LWA N/A GO:0003868 ... P93836 40032026
    917684 8xlx:A (1.56) BS02 CO N/A GO:0003868 ... P93836 40032026
    917685 8xly:A (2.106) BS01 CO N/A GO:0003868 ... P93836 N/A
    917686 8xly:B (2.106) BS01 CO N/A GO:0003868 ... P93836 N/A
    917687 8xly:B (2.106) BS02 PHE N/A GO:0003868 ... P93836 N/A
    917688 8xlz:A (1.84) BS01 UDP N/A N/A A0A5D0ENI3 39265897
    917689 8xlz:A (1.84) BS02 MG N/A N/A A0A5D0ENI3 39265897
    917690 8xlz:B (1.84) BS01 UDP N/A N/A A0A5D0ENI3 39265897
    917691 8xlz:B (1.84) BS02 MG N/A N/A A0A5D0ENI3 39265897
    917692 8xm3:A (1.92) BS01 ATP N/A GO:0000166 ... Q2G1R9 38458107
    917693 8xm3:A (1.92) BS02 A1LV5 N/A GO:0000166 ... Q2G1R9 38458107
    917694 8xm3:A (1.92) BS03 A1LV5 N/A GO:0000166 ... Q2G1R9 38458107
    917695 8xm4:A (1.67) BS01 ATP N/A GO:0000166 ... Q2G1R9 38458107
    917696 8xm4:A (1.67) BS02 XC9 N/A GO:0000166 ... Q2G1R9 38458107
    917697 8xm6:A (3.48) BS01 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    917698 8xm6:A (3.48) BS02 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    917699 8xm6:A (3.48) BS03 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    917700 8xm6:A (3.48) BS04 AV0 N/A GO:0000139 ... Q9Y6M5 39390258
    917701 8xm6:A (3.48) BS05 Y01 N/A GO:0000139 ... Q9Y6M5 39390258
    917702 8xm6:A (3.48) BS06 Y01 N/A GO:0000139 ... Q9Y6M5 39390258
    917703 8xm6:B (3.48) BS01 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    917704 8xm6:B (3.48) BS02 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    917705 8xm6:B (3.48) BS03 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    917706 8xm6:B (3.48) BS04 AV0 N/A GO:0000139 ... Q9Y6M5 39390258
    917707 8xm6:B (3.48) BS05 Y01 N/A GO:0000139 ... Q9Y6M5 39390258
    917708 8xm6:B (3.48) BS06 Y01 N/A GO:0000139 ... Q9Y6M5 39390258
    917709 8xm7:D (4.91) BS01 MG N/A GO:0003924 ... P84095 38857861
    917710 8xm7:D (4.91) BS02 GTP N/A GO:0003924 ... P84095 38857861
    917711 8xma:A (2.65) BS01 AV0 N/A GO:0000139 ... Q9Y6M5 39390258
    917712 8xma:A (2.65) BS02 Y01 N/A GO:0000139 ... Q9Y6M5 39390258
    917713 8xma:A (2.65) BS03 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    917714 8xma:A (2.65) BS04 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    917715 8xma:A (2.65) BS05 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    917716 8xma:A (2.65) BS06 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    917717 8xma:A (2.65) BS07 AV0 N/A GO:0000139 ... Q9Y6M5 39390258
    917718 8xma:B (2.65) BS01 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    917719 8xma:B (2.65) BS02 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    917720 8xma:B (2.65) BS03 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    917721 8xma:B (2.65) BS04 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    917722 8xma:B (2.65) BS05 AV0 N/A GO:0000139 ... Q9Y6M5 39390258
    917723 8xma:B (2.65) BS06 Y01 N/A GO:0000139 ... Q9Y6M5 39390258
    917724 8xma:B (2.65) BS07 Y01 N/A GO:0000139 ... Q9Y6M5 39390258
    917725 8xma:B (2.65) BS08 AV0 N/A GO:0000139 ... Q9Y6M5 39390258
    917726 8xmb:A (3.4) BS01 rna N/A GO:0000418 ... Q9LQ02 39178250
    917727 8xmb:A (3.4) BS02 MG N/A GO:0000418 ... Q9LQ02 39178250
    917728 8xmb:A (3.4) BS03 ZN N/A GO:0000418 ... Q9LQ02 39178250
    917729 8xmb:A (3.4) BS04 ZN N/A GO:0000418 ... Q9LQ02 39178250
    917730 8xmb:B (3.4) BS01 dna N/A GO:0000418 ... Q9LK40 39178250
    917731 8xmb:B (3.4) BS02 rna N/A GO:0000418 ... Q9LK40 39178250
    917732 8xmb:B (3.4) BS03 dna N/A GO:0000418 ... Q9LK40 39178250
    917733 8xmb:B (3.4) BS04 ZN N/A GO:0000418 ... Q9LK40 39178250
    917734 8xmb:B (3.4) BS05 GTP N/A GO:0000418 ... Q9LK40 39178250
    917735 8xmb:C (3.4) BS01 ZN N/A GO:0000418 ... Q39211 39178250
    917736 8xmb:I (3.4) BS01 ZN N/A GO:0000419 ... Q6NLH0 39178250
    917737 8xmb:I (3.4) BS02 ZN N/A GO:0000419 ... Q6NLH0 39178250
    917738 8xmb:L (3.4) BS01 ZN N/A GO:0000418 ... Q9FLM8 39178250
    917739 8xmc:A (3.1) BS01 dna N/A GO:0000418 ... Q9LQ02 39178250
    917740 8xmc:A (3.1) BS02 rna N/A GO:0000418 ... Q9LQ02 39178250
    917741 8xmc:A (3.1) BS03 dna N/A GO:0000418 ... Q9LQ02 39178250
    917742 8xmc:A (3.1) BS04 ZN N/A GO:0000418 ... Q9LQ02 39178250
    917743 8xmc:A (3.1) BS05 MG N/A GO:0000418 ... Q9LQ02 39178250
    917744 8xmc:A (3.1) BS06 ZN N/A GO:0000418 ... Q9LQ02 39178250
    917745 8xmc:A (3.1) BS07 ZN N/A GO:0000418 ... Q9LQ02 39178250
    917746 8xmc:B (3.1) BS01 rna N/A GO:0000418 ... Q9LK40 39178250
    917747 8xmc:B (3.1) BS02 dna N/A GO:0000418 ... Q9LK40 39178250
    917748 8xmc:B (3.1) BS03 ZN N/A GO:0000418 ... Q9LK40 39178250
    917749 8xmc:C (3.1) BS01 ZN N/A GO:0000418 ... Q39211 39178250
    917750 8xmc:E (3.1) BS01 dna N/A GO:0000418 ... O81098 39178250
    917751 8xmc:I (3.1) BS01 ZN N/A GO:0000419 ... Q6NLH0 39178250
    917752 8xmc:J (3.1) BS01 ZN N/A GO:0000418 ... Q8LFJ6 39178250
    917753 8xmc:L (3.1) BS01 ZN N/A GO:0000418 ... Q9FLM8 39178250
    917754 8xmd:A (3.4) BS01 dna N/A GO:0000418 ... Q9LQ02 39178250
    917755 8xmd:A (3.4) BS02 rna N/A GO:0000418 ... Q9LQ02 39178250
    917756 8xmd:A (3.4) BS03 dna N/A GO:0000418 ... Q9LQ02 39178250
    917757 8xmd:A (3.4) BS04 ZN N/A GO:0000418 ... Q9LQ02 39178250
    917758 8xmd:A (3.4) BS05 MG N/A GO:0000418 ... Q9LQ02 39178250
    917759 8xmd:A (3.4) BS06 ZN N/A GO:0000418 ... Q9LQ02 39178250
    917760 8xmd:A (3.4) BS07 ZN N/A GO:0000418 ... Q9LQ02 39178250
    917761 8xmd:B (3.4) BS01 rna N/A GO:0000418 ... Q9LK40 39178250
    917762 8xmd:B (3.4) BS02 dna N/A GO:0000418 ... Q9LK40 39178250
    917763 8xmd:B (3.4) BS03 ZN N/A GO:0000418 ... Q9LK40 39178250
    917764 8xmd:C (3.4) BS01 ZN N/A GO:0000418 ... Q39211 39178250
    917765 8xmd:E (3.4) BS01 dna N/A GO:0000418 ... O81098 39178250
    917766 8xmd:I (3.4) BS01 ZN N/A GO:0000419 ... Q6NLH0 39178250
    917767 8xmd:L (3.4) BS01 ZN N/A GO:0000418 ... Q9FLM8 39178250
    917768 8xme:A (3.1) BS01 rna N/A GO:0000418 ... Q9LQ02 39178250
    917769 8xme:A (3.1) BS02 dna N/A GO:0000418 ... Q9LQ02 39178250
    917770 8xme:A (3.1) BS03 ZN N/A GO:0000418 ... Q9LQ02 39178250
    917771 8xme:A (3.1) BS04 MG N/A GO:0000418 ... Q9LQ02 39178250
    917772 8xme:A (3.1) BS05 ZN N/A GO:0000418 ... Q9LQ02 39178250
    917773 8xme:A (3.1) BS06 ZN N/A GO:0000418 ... Q9LQ02 39178250
    917774 8xme:B (3.1) BS01 dna N/A GO:0000418 ... Q9LK40 39178250
    917775 8xme:B (3.1) BS02 rna N/A GO:0000418 ... Q9LK40 39178250
    917776 8xme:B (3.1) BS03 dna N/A GO:0000418 ... Q9LK40 39178250
    917777 8xme:E (3.1) BS01 dna N/A GO:0000418 ... O81098 39178250
    917778 8xme:I (3.1) BS01 ZN N/A GO:0000419 ... Q6NLH0 39178250
    917779 8xme:L (3.1) BS01 ZN N/A GO:0000418 ... Q9FLM8 39178250
    917780 8xmf:A (3.64) BS01 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    917781 8xmf:A (3.64) BS02 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    917782 8xmf:A (3.64) BS03 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    917783 8xmf:A (3.64) BS04 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    917784 8xmf:A (3.64) BS05 AV0 N/A GO:0000139 ... Q9Y6M5 39390258
    917785 8xmf:B (3.64) BS01 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    917786 8xmf:B (3.64) BS02 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    917787 8xmf:B (3.64) BS03 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    917788 8xmf:B (3.64) BS04 ZN N/A GO:0000139 ... Q9Y6M5 39390258
    917789 8xmf:B (3.64) BS05 AV0 N/A GO:0000139 ... Q9Y6M5 39390258
    917790 8xmf:B (3.64) BS06 Y01 N/A GO:0000139 ... Q9Y6M5 39390258
    917791 8xmh:A (2.85) BS01 ATP ? GO:0005267 ... O32080 38719864
    917792 8xmh:B (2.85) BS01 ATP ? GO:0005267 ... O32080 38719864
    917793 8xmh:C (2.85) BS01 ATP ? GO:0005267 ... O32080 38719864
    917794 8xmh:D (2.85) BS01 ATP ? GO:0005267 ... O32080 38719864
    917795 8xmh:E (2.85) BS01 ATP ? GO:0005267 ... O32080 38719864
    917796 8xmh:F (2.85) BS01 ATP ? GO:0005267 ... O32080 38719864
    917797 8xmh:G (2.85) BS01 ATP ? GO:0005267 ... O32080 38719864
    917798 8xmh:H (2.85) BS01 ATP ? GO:0005267 ... O32080 38719864
    917799 8xmi:A (3.0) BS01 ATP ? GO:0005267 ... O32080 38719864
    917800 8xmi:B (3.0) BS01 ATP ? GO:0005267 ... O32080 38719864

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).