SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    918401 8xp3:SW (3.4) BS01 rna N/A GO:0002181 ... P62244 39533057
    918402 8xp3:SX (3.4) BS01 rna N/A GO:0002181 ... P62266 39533057
    918403 8xp3:SY (3.4) BS01 rna N/A GO:0002181 ... P62847 39533057
    918404 8xp3:SZ (3.4) BS01 rna N/A GO:0002181 ... P62851 39533057
    918405 8xp3:Sa (3.4) BS01 rna N/A GO:0002181 ... P62854 39533057
    918406 8xp3:Sa (3.4) BS02 ZN N/A GO:0002181 ... P62854 39533057
    918407 8xp3:Sb (3.4) BS01 rna N/A GO:0002181 ... P42677 39533057
    918408 8xp3:Sb (3.4) BS02 ZN N/A GO:0002181 ... P42677 39533057
    918409 8xp3:Sc (3.4) BS01 rna N/A GO:0000028 ... P62857 39533057
    918410 8xp3:Sd (3.4) BS01 rna N/A GO:0002181 ... P62273 39533057
    918411 8xp3:Se (3.4) BS01 rna N/A GO:0003735 ... P62861 39533057
    918412 8xp3:Sf (3.4) BS01 rna N/A GO:0002181 ... P62979 39533057
    918413 8xp3:Sf (3.4) BS02 ZN N/A GO:0002181 ... P62979 39533057
    918414 8xp3:Sg (3.4) BS01 rna N/A GO:0001891 ... P63244 39533057
    918415 8xp4:A (2.26) BS01 ALY N/A GO:0000166 ... Q15046 N/A
    918416 8xp4:B (2.26) BS01 ALY N/A GO:0000166 ... Q15046 N/A
    918417 8xp5:A (2.55) BS01 ZN ? GO:0000976 ... P04637
    Q07817
    N/A
    918418 8xp5:B (2.55) BS01 ZN ? GO:0000976 ... P04637
    Q07817
    N/A
    918419 8xp6:A (1.4) BS01 FE N/A GO:0016706 ... A0ACD6BAK2 N/A
    918420 8xpf:A (1.5) BS01 peptide N/A GO:0016706 ... A0ACD6BAK2 N/A
    918421 8xpf:A (1.5) BS02 AKG N/A GO:0016706 ... A0ACD6BAK2 N/A
    918422 8xpf:A (1.5) BS03 FE N/A GO:0016706 ... A0ACD6BAK2 N/A
    918423 8xph:A (2.2) BS01 CA N/A GO:0004553 ... N/A 39287396
    918424 8xph:A (2.2) BS02 CA N/A GO:0004553 ... N/A 39287396
    918425 8xph:B (2.2) BS01 CA N/A GO:0004553 ... N/A 39287396
    918426 8xph:B (2.2) BS02 CA N/A GO:0004553 ... N/A 39287396
    918427 8xpk:A (2.0) BS01 GLC N/A GO:0004553 ... N/A 39287396
    918428 8xpk:A (2.0) BS02 BGC N/A GO:0004553 ... N/A 39287396
    918429 8xpk:A (2.0) BS03 CA N/A GO:0004553 ... N/A 39287396
    918430 8xpk:A (2.0) BS04 CA N/A GO:0004553 ... N/A 39287396
    918431 8xpk:B (2.0) BS01 GLC N/A GO:0004553 ... N/A 39287396
    918432 8xpk:B (2.0) BS02 BGC N/A GO:0004553 ... N/A 39287396
    918433 8xpk:B (2.0) BS03 BGC N/A GO:0004553 ... N/A 39287396
    918434 8xpk:B (2.0) BS04 CA N/A GO:0004553 ... N/A 39287396
    918435 8xpk:B (2.0) BS05 CA N/A GO:0004553 ... N/A 39287396
    918436 8xpn:A (2.1) BS01 ZN 3.4.19.12 GO:0004843 ... P40818 N/A
    918437 8xpn:B (2.1) BS01 ZN 3.4.19.12 GO:0004843 ... P40818 N/A
    918438 8xpn:C (2.1) BS01 ZN 3.4.19.12 GO:0004843 ... P40818 N/A
    918439 8xpo:L (3.02) BS01 rna N/A GO:0000166 ... Q6Y630 39737930
    918440 8xpo:L (3.02) BS02 rna N/A GO:0000166 ... Q6Y630 39737930
    918441 8xpo:L (3.02) BS03 rna N/A GO:0000166 ... Q6Y630 39737930
    918442 8xpo:L (3.02) BS04 A1LVZ N/A GO:0000166 ... Q6Y630 39737930
    918443 8xpp:A (3.0) BS01 rna N/A GO:0003723 ... B6F2F5 39737930
    918444 8xpp:A (3.0) BS02 rna N/A GO:0003723 ... B6F2F5 39737930
    918445 8xpp:A (3.0) BS03 ZN N/A GO:0003723 ... B6F2F5 39737930
    918446 8xpt:A (3.35) BS01 SAH 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    918447 8xpt:A (3.35) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    918448 8xpt:A (3.35) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    918449 8xpt:A (3.35) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    918450 8xpt:A (3.35) BS05 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    918451 8xpt:B (3.35) BS01 SAH 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    918452 8xpt:B (3.35) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    918453 8xpt:B (3.35) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    918454 8xpt:B (3.35) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    918455 8xpt:B (3.35) BS05 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    918456 8xpt:C (3.35) BS01 SAH 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    918457 8xpt:C (3.35) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    918458 8xpt:C (3.35) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    918459 8xpt:C (3.35) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    918460 8xpt:C (3.35) BS05 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    918461 8xpt:D (3.35) BS01 SAH 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    918462 8xpt:D (3.35) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    918463 8xpt:D (3.35) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    918464 8xpt:D (3.35) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    918465 8xpt:D (3.35) BS05 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    918466 8xpu:B (3.3) BS01 VRW N/A GO:0002720 ... Q01650 38956038
    918467 8xpv:A (1.55) BS01 4Z5 2.7.10.1 GO:0004672 ... P29317 N/A
    918468 8xq0:A (1.95) BS01 A1LV4 N/A GO:0004672 ... P43405 N/A
    918469 8xq0:B (1.95) BS01 A1LV4 N/A GO:0004672 ... P43405 N/A
    918470 8xq0:C (1.95) BS01 A1LV4 N/A GO:0004672 ... P43405 N/A
    918471 8xq0:D (1.95) BS01 A1LV4 N/A GO:0004672 ... P43405 N/A
    918472 8xq1:A (1.5) BS01 A1LV6 N/A GO:0004672 ... P43405 N/A
    918473 8xq1:B (1.5) BS01 A1LV6 N/A GO:0004672 ... P43405 N/A
    918474 8xq2:A (1.8) BS01 A1LV7 N/A GO:0004672 ... P43405 N/A
    918475 8xq2:B (1.8) BS01 A1LV7 N/A GO:0004672 ... P43405 N/A
    918476 8xq7:A (3.15) BS01 CMP N/A GO:0005216 ... A3RL54 38957574
    918477 8xq7:B (3.15) BS01 CMP N/A GO:0005216 ... A3RL54 38957574
    918478 8xq8:A (3.35) BS01 CMP N/A GO:0005216 ... A3RL54 38957574
    918479 8xqc:A (3.25) BS01 dna N/A GO:0003677 ... P26358 N/A
    918480 8xqc:A (3.25) BS02 dna N/A GO:0003677 ... P26358 N/A
    918481 8xqc:A (3.25) BS03 SAH N/A GO:0003677 ... P26358 N/A
    918482 8xqc:A (3.25) BS04 ZN N/A GO:0003677 ... P26358 N/A
    918483 8xqc:A (3.25) BS05 ZN N/A GO:0003677 ... P26358 N/A
    918484 8xqe:R (3.48) BS01 peptide N/A GO:0004930 ... P35414 39747115
    918485 8xqf:R (3.13) BS01 peptide N/A GO:0004930 ... P35414 39747115
    918486 8xqi:A (3.25) BS01 CLR N/A GO:0004930 ... P35414 39747115
    918487 8xqi:B (3.25) BS01 CLR N/A GO:0004930 ... P35414 39747115
    918488 8xqi:B (3.25) BS02 CLR N/A GO:0004930 ... P35414 39747115
    918489 8xqj:C (2.95) BS01 CLR N/A GO:0004930 ... P35414 39747115
    918490 8xqj:C (2.95) BS02 CLR N/A GO:0004930 ... P35414 39747115
    918491 8xqj:C (2.95) BS03 CLR N/A GO:0004930 ... P35414 39747115
    918492 8xqj:D (2.95) BS01 CLR N/A GO:0004930 ... P35414 39747115
    918493 8xqj:D (2.95) BS02 CLR N/A GO:0004930 ... P35414 39747115
    918494 8xql:A (2.99) BS01 GOQ N/A GO:0003924 ... P63092 38776963
    918495 8xql:R (2.99) BS01 GOQ N/A GO:0001580 ... Q59310
    Q9NYV8
    38776963
    918496 8xql:R (2.99) BS02 GOQ N/A GO:0001580 ... Q59310
    Q9NYV8
    38776963
    918497 8xql:R (2.99) BS03 CLR N/A GO:0001580 ... Q59310
    Q9NYV8
    38776963
    918498 8xqn:R (3.05) BS01 GOQ N/A GO:0001580 ... Q59310
    Q9NYV8
    38776963
    918499 8xqn:R (3.05) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8
    38776963
    918500 8xqo:R (2.77) BS01 GOQ N/A GO:0001580 ... Q59310
    Q9NYV8
    38776963
    918501 8xqo:R (2.77) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8
    38776963
    918502 8xqp:R (3.29) BS01 GOQ N/A GO:0001580 ... Q59310
    Q9NYV8
    38776963
    918503 8xqp:R (3.29) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8
    38776963
    918504 8xqr:R (3.2) BS01 FLF N/A GO:0001580 ... Q59310
    Q9NYV8
    38776963
    918505 8xqs:R (3.3) BS01 FLF N/A GO:0001580 ... Q59310
    Q9NYV8
    38776963
    918506 8xqs:R (3.3) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8
    38776963
    918507 8xqt:R (2.94) BS01 CLR N/A GO:0001580 ... Q59310
    Q9NYV8
    38776963
    918508 8xqt:R (2.94) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8
    38776963
    918509 8xqv:A (2.698) BS01 CO N/A GO:0003868 ... P93836 N/A
    918510 8xqv:A (2.698) BS02 A1LWU N/A GO:0003868 ... P93836 N/A
    918511 8xqv:B (2.698) BS01 CO N/A GO:0003868 ... P93836 N/A
    918512 8xqv:B (2.698) BS02 A1LWU N/A GO:0003868 ... P93836 N/A
    918513 8xqw:A (2.9) BS01 ANP N/A GO:0004176 ... N/A 39197449
    918514 8xqw:C (2.9) BS01 ANP N/A GO:0004176 ... N/A 39197449
    918515 8xqw:D (2.9) BS01 A1LXL N/A N/A A0A218N8A7 39197449
    918516 8xqw:E (2.9) BS01 ANP N/A GO:0004176 ... N/A 39197449
    918517 8xqw:F (2.9) BS01 ANP N/A GO:0004176 ... N/A 39197449
    918518 8xqw:F (2.9) BS02 ANP N/A GO:0004176 ... N/A 39197449
    918519 8xqw:I (2.9) BS01 Y01 N/A N/A N/A 39197449
    918520 8xqw:M (2.9) BS01 Y01 N/A GO:0016491 ... A0A2K3DQ46 39197449
    918521 8xqw:P (2.9) BS01 A1LXL N/A N/A A0A2K3DHV6 39197449
    918522 8xqw:P (2.9) BS02 A1LXL N/A N/A A0A2K3DHV6 39197449
    918523 8xqw:R (2.9) BS01 ZN N/A N/A A0A2K3DGW6 39197449
    918524 8xqw:R (2.9) BS02 ZN N/A N/A A0A2K3DGW6 39197449
    918525 8xqx:I (2.8) BS01 Y01 N/A N/A N/A 39197449
    918526 8xqx:M (2.8) BS01 Y01 N/A GO:0016491 ... A0A2K3DQ46 39197449
    918527 8xqx:P (2.8) BS01 A1LXL N/A N/A A0A2K3DHV6 39197449
    918528 8xqx:P (2.8) BS02 A1LXL N/A N/A A0A2K3DHV6 39197449
    918529 8xqx:R (2.8) BS01 ZN N/A N/A A0A2K3DGW6 39197449
    918530 8xqx:R (2.8) BS02 ZN N/A N/A A0A2K3DGW6 39197449
    918531 8xqy:A (2.003) BS01 A1LWP N/A GO:0003868 ... P93836 N/A
    918532 8xqy:A (2.003) BS02 CO N/A GO:0003868 ... P93836 N/A
    918533 8xqz:A (1.783) BS01 CO N/A GO:0003868 ... P93836 N/A
    918534 8xqz:A (1.783) BS02 A1LWQ N/A GO:0003868 ... P93836 N/A
    918535 8xr0:A (2.002) BS01 CO N/A GO:0003868 ... P93836 N/A
    918536 8xr0:A (2.002) BS02 A1LWR N/A GO:0003868 ... P93836 N/A
    918537 8xr4:A (1.94) BS01 NAP ? GO:0005829 ... A0A3R7J519 38459030
    918538 8xr4:B (1.94) BS01 NAP ? GO:0005829 ... A0A3R7J519 38459030
    918539 8xr4:C (1.94) BS01 NAP ? GO:0005829 ... A0A3R7J519 38459030
    918540 8xr4:D (1.94) BS01 NAP ? GO:0005829 ... A0A3R7J519 38459030
    918541 8xr4:E (1.94) BS01 NAP ? GO:0005829 ... A0A3R7J519 38459030
    918542 8xr4:F (1.94) BS01 NAP ? GO:0005829 ... A0A3R7J519 38459030
    918543 8xr4:G (1.94) BS01 NAP ? GO:0005829 ... A0A3R7J519 38459030
    918544 8xr4:H (1.94) BS01 NAP ? GO:0005829 ... A0A3R7J519 38459030
    918545 8xr5:A (1.95) BS01 A1LV3 N/A N/A Q9NZQ7 38465588
    918546 8xr5:B (1.95) BS01 A1LV3 N/A N/A Q9NZQ7 38465588
    918547 8xr6:0 (2.53) BS01 CLA N/A GO:0009765 ... N/A 38866834
    918548 8xr6:0 (2.53) BS02 CLA N/A GO:0009765 ... N/A 38866834
    918549 8xr6:0 (2.53) BS03 CLA N/A GO:0009765 ... N/A 38866834
    918550 8xr6:0 (2.53) BS04 CLA N/A GO:0009765 ... N/A 38866834
    918551 8xr6:0 (2.53) BS05 KC2 N/A GO:0009765 ... N/A 38866834
    918552 8xr6:0 (2.53) BS06 CLA N/A GO:0009765 ... N/A 38866834
    918553 8xr6:0 (2.53) BS07 CLA N/A GO:0009765 ... N/A 38866834
    918554 8xr6:0 (2.53) BS08 CLA N/A GO:0009765 ... N/A 38866834
    918555 8xr6:0 (2.53) BS09 CLA N/A GO:0009765 ... N/A 38866834
    918556 8xr6:0 (2.53) BS10 CLA N/A GO:0009765 ... N/A 38866834
    918557 8xr6:0 (2.53) BS11 CLA N/A GO:0009765 ... N/A 38866834
    918558 8xr6:0 (2.53) BS12 8CT N/A GO:0009765 ... N/A 38866834
    918559 8xr6:0 (2.53) BS13 II0 N/A GO:0009765 ... N/A 38866834
    918560 8xr6:0 (2.53) BS14 II0 N/A GO:0009765 ... N/A 38866834
    918561 8xr6:0 (2.53) BS15 II0 N/A GO:0009765 ... N/A 38866834
    918562 8xr6:0 (2.53) BS16 II0 N/A GO:0009765 ... N/A 38866834
    918563 8xr6:0 (2.53) BS17 CLA N/A GO:0009765 ... N/A 38866834
    918564 8xr6:1 (2.53) BS01 CLA N/A GO:0009765 ... N/A 38866834
    918565 8xr6:1 (2.53) BS02 CLA N/A GO:0009765 ... N/A 38866834
    918566 8xr6:1 (2.53) BS03 CLA N/A GO:0009765 ... N/A 38866834
    918567 8xr6:1 (2.53) BS04 CLA N/A GO:0009765 ... N/A 38866834
    918568 8xr6:1 (2.53) BS05 CLA N/A GO:0009765 ... N/A 38866834
    918569 8xr6:1 (2.53) BS06 CLA N/A GO:0009765 ... N/A 38866834
    918570 8xr6:1 (2.53) BS07 CLA N/A GO:0009765 ... N/A 38866834
    918571 8xr6:1 (2.53) BS08 CLA N/A GO:0009765 ... N/A 38866834
    918572 8xr6:1 (2.53) BS09 CLA N/A GO:0009765 ... N/A 38866834
    918573 8xr6:1 (2.53) BS10 KC2 N/A GO:0009765 ... N/A 38866834
    918574 8xr6:1 (2.53) BS11 KC2 N/A GO:0009765 ... N/A 38866834
    918575 8xr6:1 (2.53) BS12 8CT N/A GO:0009765 ... N/A 38866834
    918576 8xr6:1 (2.53) BS13 II0 N/A GO:0009765 ... N/A 38866834
    918577 8xr6:1 (2.53) BS14 II0 N/A GO:0009765 ... N/A 38866834
    918578 8xr6:1 (2.53) BS15 II0 N/A GO:0009765 ... N/A 38866834
    918579 8xr6:1 (2.53) BS16 II0 N/A GO:0009765 ... N/A 38866834
    918580 8xr6:1 (2.53) BS17 CLA N/A GO:0009765 ... N/A 38866834
    918581 8xr6:2 (2.53) BS01 CLA N/A GO:0009765 ... N/A 38866834
    918582 8xr6:2 (2.53) BS02 CLA N/A GO:0009765 ... N/A 38866834
    918583 8xr6:2 (2.53) BS03 8CT N/A GO:0009765 ... N/A 38866834
    918584 8xr6:2 (2.53) BS04 II0 N/A GO:0009765 ... N/A 38866834
    918585 8xr6:2 (2.53) BS05 CLA N/A GO:0009765 ... N/A 38866834
    918586 8xr6:2 (2.53) BS06 CLA N/A GO:0009765 ... N/A 38866834
    918587 8xr6:2 (2.53) BS07 CLA N/A GO:0009765 ... N/A 38866834
    918588 8xr6:2 (2.53) BS08 CLA N/A GO:0009765 ... N/A 38866834
    918589 8xr6:2 (2.53) BS09 CLA N/A GO:0009765 ... N/A 38866834
    918590 8xr6:2 (2.53) BS10 CLA N/A GO:0009765 ... N/A 38866834
    918591 8xr6:2 (2.53) BS11 CLA N/A GO:0009765 ... N/A 38866834
    918592 8xr6:2 (2.53) BS12 CLA N/A GO:0009765 ... N/A 38866834
    918593 8xr6:2 (2.53) BS13 KC2 N/A GO:0009765 ... N/A 38866834
    918594 8xr6:2 (2.53) BS14 CLA N/A GO:0009765 ... N/A 38866834
    918595 8xr6:2 (2.53) BS15 II0 N/A GO:0009765 ... N/A 38866834
    918596 8xr6:2 (2.53) BS16 II0 N/A GO:0009765 ... N/A 38866834
    918597 8xr6:2 (2.53) BS17 II0 N/A GO:0009765 ... N/A 38866834
    918598 8xr6:2 (2.53) BS18 IHT N/A GO:0009765 ... N/A 38866834
    918599 8xr6:2 (2.53) BS19 II0 N/A GO:0009765 ... N/A 38866834
    918600 8xr6:2 (2.53) BS20 CLA N/A GO:0009765 ... N/A 38866834

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).