SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    919001 8xrj:B (3.6) BS01 rna N/A GO:0000781 ... P30876 40436841
    919002 8xrj:B (3.6) BS02 dna N/A GO:0000781 ... P30876 40436841
    919003 8xrj:B (3.6) BS03 ZN N/A GO:0000781 ... P30876 40436841
    919004 8xrj:C (3.6) BS01 ZN N/A GO:0003677 ... P19387 40436841
    919005 8xrj:E (3.6) BS01 dna N/A GO:0003677 ... P19388 40436841
    919006 8xrj:I (3.6) BS01 ZN N/A GO:0001193 ... P36954 40436841
    919007 8xrj:I (3.6) BS02 ZN N/A GO:0001193 ... P36954 40436841
    919008 8xrj:J (3.6) BS01 ZN N/A GO:0003677 ... P62875 40436841
    919009 8xrj:L (3.6) BS01 ZN N/A GO:0001650 ... P53803 40436841
    919010 8xrj:a (3.6) BS01 dna N/A GO:0000786 ... P68431 40436841
    919011 8xrj:a (3.6) BS02 dna N/A GO:0000786 ... P68431 40436841
    919012 8xrj:b (3.6) BS01 dna N/A GO:0000781 ... P62805 40436841
    919013 8xrj:b (3.6) BS02 dna N/A GO:0000781 ... P62805 40436841
    919014 8xrj:c (3.6) BS01 dna N/A GO:0000786 ... P04908 40436841
    919015 8xrj:c (3.6) BS02 dna N/A GO:0000786 ... P04908 40436841
    919016 8xrj:d (3.6) BS01 dna N/A GO:0000786 ... P06899 40436841
    919017 8xrj:d (3.6) BS02 dna N/A GO:0000786 ... P06899 40436841
    919018 8xrj:e (3.6) BS01 dna N/A GO:0000786 ... P68431 40436841
    919019 8xrj:e (3.6) BS02 dna N/A GO:0000786 ... P68431 40436841
    919020 8xrj:f (3.6) BS01 dna N/A GO:0000781 ... P62805 40436841
    919021 8xrj:f (3.6) BS02 dna N/A GO:0000781 ... P62805 40436841
    919022 8xrj:g (3.6) BS01 dna N/A GO:0000786 ... P04908 40436841
    919023 8xrj:g (3.6) BS02 dna N/A GO:0000786 ... P04908 40436841
    919024 8xrj:h (3.6) BS01 dna N/A GO:0000786 ... P06899 40436841
    919025 8xrm:A (3.13) BS01 rna N/A GO:0000287 ... P24928 40436841
    919026 8xrm:A (3.13) BS02 dna N/A GO:0000287 ... P24928 40436841
    919027 8xrm:A (3.13) BS03 ZN N/A GO:0000287 ... P24928 40436841
    919028 8xrm:A (3.13) BS04 MG N/A GO:0000287 ... P24928 40436841
    919029 8xrm:B (3.13) BS01 rna N/A GO:0000781 ... P30876 40436841
    919030 8xrm:B (3.13) BS02 dna N/A GO:0000781 ... P30876 40436841
    919031 8xrm:B (3.13) BS03 ZN N/A GO:0000781 ... P30876 40436841
    919032 8xrm:C (3.13) BS01 ZN N/A GO:0003677 ... P19387 40436841
    919033 8xrm:E (3.13) BS01 dna N/A GO:0003677 ... P19388 40436841
    919034 8xrm:I (3.13) BS01 ZN N/A GO:0001193 ... P36954 40436841
    919035 8xrm:I (3.13) BS02 ZN N/A GO:0001193 ... P36954 40436841
    919036 8xrm:J (3.13) BS01 ZN N/A GO:0003677 ... P62875 40436841
    919037 8xrm:L (3.13) BS01 ZN N/A GO:0001650 ... P53803 40436841
    919038 8xrm:M (3.13) BS01 rna N/A GO:0003676 ... Q7KZ85 40436841
    919039 8xrm:Q (3.13) BS01 ZN N/A GO:0000993 ... P60002 40436841
    919040 8xrr:A (2.57) BS01 A1LV8 N/A GO:0004672 ... A0A0B4J203 N/A
    919041 8xrt:A (2.4) BS01 CA N/A GO:0004553 ... A0AAT8XUK7 38527679
    919042 8xrt:B (2.4) BS01 CA N/A GO:0004553 ... A0AAT8XUK7 38527679
    919043 8xrt:C (2.4) BS01 CA N/A GO:0004553 ... A0AAT8XUK7 38527679
    919044 8xrt:D (2.4) BS01 CA N/A GO:0004553 ... A0AAT8XUK7 38527679
    919045 8xrt:E (2.4) BS01 CA N/A GO:0004553 ... A0AAT8XUK7 38527679
    919046 8xrt:F (2.4) BS01 CA N/A GO:0004553 ... A0AAT8XUK7 38527679
    919047 8xru:A (2.02) BS01 CA N/A GO:0004553 ... A0AAT8XUK7 38527679
    919048 8xru:B (2.02) BS01 CA N/A GO:0004553 ... A0AAT8XUK7 38527679
    919049 8xrv:A (2.4) BS01 BGC N/A GO:0004553 ... A0AAT8XUK7 38527679
    919050 8xrv:A (2.4) BS02 CA N/A GO:0004553 ... A0AAT8XUK7 38527679
    919051 8xrv:B (2.4) BS01 BGC N/A GO:0004553 ... A0AAT8XUK7 38527679
    919052 8xrv:B (2.4) BS02 CA N/A GO:0004553 ... A0AAT8XUK7 38527679
    919053 8xrv:C (2.4) BS01 BGC N/A GO:0004553 ... A0AAT8XUK7 38527679
    919054 8xrv:C (2.4) BS02 CA N/A GO:0004553 ... A0AAT8XUK7 38527679
    919055 8xrv:D (2.4) BS01 BGC N/A GO:0004553 ... A0AAT8XUK7 38527679
    919056 8xrv:D (2.4) BS02 CA N/A GO:0004553 ... A0AAT8XUK7 38527679
    919057 8xrv:E (2.4) BS01 BGC N/A GO:0004553 ... A0AAT8XUK7 38527679
    919058 8xrv:E (2.4) BS02 CA N/A GO:0004553 ... A0AAT8XUK7 38527679
    919059 8xrv:F (2.4) BS01 BGC N/A GO:0004553 ... A0AAT8XUK7 38527679
    919060 8xrv:F (2.4) BS02 CA N/A GO:0004553 ... A0AAT8XUK7 38527679
    919061 8xrw:I (2.2) BS01 ATP N/A GO:0003824 ... O26010 N/A
    919062 8xrw:J (2.2) BS01 ATP N/A GO:0003824 ... O26010 N/A
    919063 8xrw:L (2.2) BS01 ATP N/A GO:0003824 ... O26010 N/A
    919064 8xrx:A (2.5) BS01 BGC N/A GO:0004553 ... A0AAT8XUL0 38527679
    919065 8xrx:A (2.5) BS02 BGC N/A GO:0004553 ... A0AAT8XUL0 38527679
    919066 8xrx:A (2.5) BS03 CA N/A GO:0004553 ... A0AAT8XUL0 38527679
    919067 8xrx:B (2.5) BS01 BGC N/A GO:0004553 ... A0AAT8XUL0 38527679
    919068 8xrx:B (2.5) BS02 GLC N/A GO:0004553 ... A0AAT8XUL0 38527679
    919069 8xrx:B (2.5) BS03 CA N/A GO:0004553 ... A0AAT8XUL0 38527679
    919070 8xrx:C (2.5) BS01 BGC N/A GO:0004553 ... A0AAT8XUL0 38527679
    919071 8xrx:C (2.5) BS02 CA N/A GO:0004553 ... A0AAT8XUL0 38527679
    919072 8xrx:D (2.5) BS01 BGC N/A GO:0004553 ... A0AAT8XUL0 38527679
    919073 8xrx:D (2.5) BS02 CA N/A GO:0004553 ... A0AAT8XUL0 38527679
    919074 8xrx:E (2.5) BS01 CA N/A GO:0004553 ... A0AAT8XUL0 38527679
    919075 8xrx:F (2.5) BS01 BGC N/A GO:0004553 ... A0AAT8XUL0 38527679
    919076 8xrx:F (2.5) BS02 CA N/A GO:0004553 ... A0AAT8XUL0 38527679
    919077 8xrz:C (2.11) BS01 A1D5F N/A GO:0004104 ... E6SHQ4 N/A
    919078 8xs1:H (2.3) BS01 peptide N/A N/A N/A 39859361
    919079 8xs1:L (2.3) BS01 peptide N/A N/A N/A 39859361
    919080 8xs6:A (2.95) BS01 dna N/A GO:0003700 ... P27540 39900897
    919081 8xs6:A (2.95) BS02 dna N/A GO:0003700 ... P27540 39900897
    919082 8xs6:B (2.95) BS01 dna N/A GO:0006355 ... I3LF82 39900897
    919083 8xs6:B (2.95) BS02 dna N/A GO:0006355 ... I3LF82 39900897
    919084 8xs6:B (2.95) BS03 A1LWH N/A GO:0006355 ... I3LF82 39900897
    919085 8xs7:A (2.77) BS01 dna N/A GO:0003700 ... P27540 39900897
    919086 8xs7:B (2.77) BS01 dna N/A GO:0006355 ... I3LF82 39900897
    919087 8xs7:B (2.77) BS02 dna N/A GO:0006355 ... I3LF82 39900897
    919088 8xs7:B (2.77) BS03 A1LWI N/A GO:0006355 ... I3LF82 39900897
    919089 8xs8:A (3.11) BS01 dna N/A GO:0003700 ... P27540 39900897
    919090 8xs8:A (3.11) BS02 dna N/A GO:0003700 ... P27540 39900897
    919091 8xs8:B (3.11) BS01 dna N/A GO:0006355 ... I3LF82 39900897
    919092 8xs8:B (3.11) BS02 dna N/A GO:0006355 ... I3LF82 39900897
    919093 8xs8:B (3.11) BS03 W62 N/A GO:0006355 ... I3LF82 39900897
    919094 8xs9:A (2.801) BS01 dna N/A GO:0003700 ... P27540 39900897
    919095 8xs9:A (2.801) BS02 dna N/A GO:0003700 ... P27540 39900897
    919096 8xs9:B (2.801) BS01 dna N/A GO:0006355 ... I3LF82 39900897
    919097 8xs9:B (2.801) BS02 dna N/A GO:0006355 ... I3LF82 39900897
    919098 8xs9:B (2.801) BS03 A1LWJ N/A GO:0006355 ... I3LF82 39900897
    919099 8xsa:A (2.597) BS01 dna N/A GO:0003700 ... P27540 39900897
    919100 8xsa:A (2.597) BS02 dna N/A GO:0003700 ... P27540 39900897
    919101 8xsa:B (2.597) BS01 dna N/A GO:0006355 ... I3LF82 39900897
    919102 8xsa:B (2.597) BS02 dna N/A GO:0006355 ... I3LF82 39900897
    919103 8xsa:B (2.597) BS03 A1LWK N/A GO:0006355 ... I3LF82 39900897
    919104 8xsb:A (3.06) BS01 dna N/A GO:0003700 ... P27540 39900897
    919105 8xsb:A (3.06) BS02 dna N/A GO:0003700 ... P27540 39900897
    919106 8xsb:B (3.06) BS01 dna N/A GO:0006355 ... I3LF82 39900897
    919107 8xsb:B (3.06) BS02 dna N/A GO:0006355 ... I3LF82 39900897
    919108 8xsb:B (3.06) BS03 JY6 N/A GO:0006355 ... I3LF82 39900897
    919109 8xsc:A (1.96) BS01 PNS N/A GO:0003824 ... O26010 N/A
    919110 8xsf:A (2.16) BS01 ZN N/A GO:0006508 ... Q9BYF1 38850530
    919111 8xsg:A (1.8) BS01 URI N/A GO:0016757 ... C5RYK2 40316025
    919112 8xsj:A (2.61) BS01 ZN N/A GO:0006508 ... Q9BYF1 38850530
    919113 8xsm:A (3.01) BS01 RBF N/A GO:0005515 ... Q9HAB3 N/A
    919114 8xsm:A (3.01) BS02 RBF N/A GO:0005515 ... Q9HAB3 N/A
    919115 8xsn:A (3.29) BS01 RBF N/A GO:0005515 ... Q9NQ40 N/A
    919116 8xso:A (2.7) BS01 dna N/A GO:0000287 ... P24928 40436841
    919117 8xso:A (2.7) BS02 rna N/A GO:0000287 ... P24928 40436841
    919118 8xso:A (2.7) BS03 dna N/A GO:0000287 ... P24928 40436841
    919119 8xso:A (2.7) BS04 ZN N/A GO:0000287 ... P24928 40436841
    919120 8xso:A (2.7) BS05 MG N/A GO:0000287 ... P24928 40436841
    919121 8xso:B (2.7) BS01 rna N/A GO:0000781 ... P30876 40436841
    919122 8xso:B (2.7) BS02 dna N/A GO:0000781 ... P30876 40436841
    919123 8xso:B (2.7) BS03 ZN N/A GO:0000781 ... P30876 40436841
    919124 8xso:C (2.7) BS01 ZN N/A GO:0003677 ... P19387 40436841
    919125 8xso:E (2.7) BS01 dna N/A GO:0003677 ... P19388 40436841
    919126 8xso:I (2.7) BS01 ZN N/A GO:0001193 ... P36954 40436841
    919127 8xso:I (2.7) BS02 ZN N/A GO:0001193 ... P36954 40436841
    919128 8xso:J (2.7) BS01 ZN N/A GO:0003677 ... P62875 40436841
    919129 8xso:L (2.7) BS01 ZN N/A GO:0001650 ... P53803 40436841
    919130 8xsr:A (2.93) BS01 ATP N/A GO:0005524 ... P9WQJ1 40295516
    919131 8xsr:A (2.93) BS02 MG N/A GO:0005524 ... P9WQJ1 40295516
    919132 8xsr:B (2.93) BS01 ATP N/A GO:0005524 ... P9WQJ3 40295516
    919133 8xsr:B (2.93) BS02 ADP N/A GO:0005524 ... P9WQJ3 40295516
    919134 8xss:B (3.33) BS01 ADP N/A GO:0005524 ... P9WQJ3 40295516
    919135 8xst:B (3.1) BS01 ADP N/A GO:0005524 ... P9WQJ3 40295516
    919136 8xsu:A (2.632) BS01 A1LW0 N/A GO:0004888 ... P58154 39043224
    919137 8xsu:B (2.632) BS01 A1LW0 N/A GO:0004888 ... P58154 39043224
    919138 8xsu:B (2.632) BS02 A1LW0 N/A GO:0004888 ... P58154 39043224
    919139 8xsu:C (2.632) BS01 A1LW0 N/A GO:0004888 ... P58154 39043224
    919140 8xsu:C (2.632) BS02 A1LW0 N/A GO:0004888 ... P58154 39043224
    919141 8xsu:D (2.632) BS01 A1LW0 N/A GO:0004888 ... P58154 39043224
    919142 8xsu:D (2.632) BS02 A1LW0 N/A GO:0004888 ... P58154 39043224
    919143 8xsu:E (2.632) BS01 A1LW0 N/A GO:0004888 ... P58154 39043224
    919144 8xsu:E (2.632) BS02 A1LW0 N/A GO:0004888 ... P58154 39043224
    919145 8xsv:A (2.0) BS01 COD N/A GO:0003824 ... O26010 N/A
    919146 8xsv:B (2.0) BS01 COD N/A GO:0003824 ... O26010 N/A
    919147 8xsv:C (2.0) BS01 COD N/A GO:0003824 ... O26010 N/A
    919148 8xsv:D (2.0) BS01 COD N/A GO:0003824 ... O26010 N/A
    919149 8xsv:D (2.0) BS02 COD N/A GO:0003824 ... O26010 N/A
    919150 8xsv:E (2.0) BS01 COD N/A GO:0003824 ... O26010 N/A
    919151 8xsv:E (2.0) BS02 COD N/A GO:0003824 ... O26010 N/A
    919152 8xsv:F (2.0) BS01 COD N/A GO:0003824 ... O26010 N/A
    919153 8xsw:A (2.6) BS01 A1LW0 N/A GO:0004888 ... P58154 N/A
    919154 8xsw:A (2.6) BS02 A1LW0 N/A GO:0004888 ... P58154 N/A
    919155 8xsw:B (2.6) BS01 A1LW0 N/A GO:0004888 ... P58154 N/A
    919156 8xsw:B (2.6) BS02 A1LW0 N/A GO:0004888 ... P58154 N/A
    919157 8xsw:C (2.6) BS01 A1LW0 N/A GO:0004888 ... P58154 N/A
    919158 8xsw:C (2.6) BS02 A1LW0 N/A GO:0004888 ... P58154 N/A
    919159 8xsw:D (2.6) BS01 A1LW0 N/A GO:0004888 ... P58154 N/A
    919160 8xsw:D (2.6) BS02 A1LW0 N/A GO:0004888 ... P58154 N/A
    919161 8xsw:E (2.6) BS01 A1LW0 N/A GO:0004888 ... P58154 N/A
    919162 8xsw:E (2.6) BS02 A1LW0 N/A GO:0004888 ... P58154 N/A
    919163 8xsx:CA (2.4) BS01 rna N/A GO:0003676 ... Q9UQ80 38942792
    919164 8xsx:CB (2.4) BS01 rna N/A GO:0002039 ... P13639 38942792
    919165 8xsx:CB (2.4) BS02 rna N/A GO:0002039 ... P13639 38942792
    919166 8xsx:CB (2.4) BS03 ADP N/A GO:0002039 ... P13639 38942792
    919167 8xsx:CD (2.4) BS01 rna N/A GO:0003723 ... Q8NC51 38942792
    919168 8xsx:LA (2.4) BS01 rna N/A GO:0002181 ... P62917 38942792
    919169 8xsx:LA (2.4) BS02 rna N/A GO:0002181 ... P62917 38942792
    919170 8xsx:LA (2.4) BS03 MG N/A GO:0002181 ... P62917 38942792
    919171 8xsx:LB (2.4) BS01 rna N/A GO:0002181 ... P39023 38942792
    919172 8xsx:LC (2.4) BS01 rna N/A GO:0002181 ... P36578 38942792
    919173 8xsx:LC (2.4) BS02 rna N/A GO:0002181 ... P36578 38942792
    919174 8xsx:LD (2.4) BS01 rna N/A GO:0000027 ... P46777 38942792
    919175 8xsx:LD (2.4) BS02 rna N/A GO:0000027 ... P46777 38942792
    919176 8xsx:LE (2.4) BS01 rna N/A GO:0002181 ... Q02878 38942792
    919177 8xsx:LF (2.4) BS01 rna N/A GO:0000463 ... P18124 38942792
    919178 8xsx:LF (2.4) BS02 rna N/A GO:0000463 ... P18124 38942792
    919179 8xsx:LG (2.4) BS01 rna N/A GO:0000470 ... P62424 38942792
    919180 8xsx:LG (2.4) BS02 rna N/A GO:0000470 ... P62424 38942792
    919181 8xsx:LH (2.4) BS01 rna N/A GO:0002181 ... P32969 38942792
    919182 8xsx:LI (2.4) BS01 rna N/A GO:0000027 ... Q96L21 38942792
    919183 8xsx:LI (2.4) BS02 rna N/A GO:0000027 ... Q96L21 38942792
    919184 8xsx:LJ (2.4) BS01 rna N/A GO:0000027 ... P62913 38942792
    919185 8xsx:LJ (2.4) BS02 rna N/A GO:0000027 ... P62913 38942792
    919186 8xsx:LK (2.4) BS01 rna N/A GO:0002181 ... P30050 38942792
    919187 8xsx:LL (2.4) BS01 rna N/A GO:0002181 ... P26373 38942792
    919188 8xsx:LL (2.4) BS02 rna N/A GO:0002181 ... P26373 38942792
    919189 8xsx:LM (2.4) BS01 rna N/A GO:0002181 ... P50914 38942792
    919190 8xsx:LN (2.4) BS01 rna N/A GO:0002181 ... P61313 38942792
    919191 8xsx:LN (2.4) BS02 rna N/A GO:0002181 ... P61313 38942792
    919192 8xsx:LO (2.4) BS01 rna N/A GO:0002181 ... P40429 38942792
    919193 8xsx:LP (2.4) BS01 rna N/A GO:0002181 ... P18621 38942792
    919194 8xsx:LP (2.4) BS02 rna N/A GO:0002181 ... P18621 38942792
    919195 8xsx:LQ (2.4) BS01 rna N/A GO:0002181 ... Q07020 38942792
    919196 8xsx:LR (2.4) BS01 rna N/A GO:0002181 ... P84098 38942792
    919197 8xsx:LR (2.4) BS02 rna N/A GO:0002181 ... P84098 38942792
    919198 8xsx:LS (2.4) BS01 rna N/A GO:0002181 ... Q02543 38942792
    919199 8xsx:LS (2.4) BS02 rna N/A GO:0002181 ... Q02543 38942792
    919200 8xsx:LT (2.4) BS01 rna N/A GO:0001650 ... P46778 38942792

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).