SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    919601 8xt1:LU (3.1) BS01 rna N/A GO:0003723 ... Q7Z2W9 38942792
    919602 8xt1:LV (3.1) BS01 rna N/A GO:0003735 ... Q9NWU5 38942792
    919603 8xt1:LW (3.1) BS01 rna N/A GO:0003723 ... Q16540 38942792
    919604 8xt1:LX (3.1) BS01 rna N/A GO:0003723 ... Q96A35 38942792
    919605 8xt1:La (3.1) BS01 rna N/A GO:0003723 ... Q9P0M9 38942792
    919606 8xt1:Lb (3.1) BS01 rna N/A GO:0003723 ... Q13084 38942792
    919607 8xt1:Ld (3.1) BS01 rna N/A GO:0003735 ... Q8TCC3 38942792
    919608 8xt1:Lf (3.1) BS01 rna N/A GO:0003723 ... Q9BYC8 38942792
    919609 8xt1:Lf (3.1) BS02 ZN N/A GO:0003723 ... Q9BYC8 38942792
    919610 8xt1:Lg (3.1) BS01 rna N/A GO:0003735 ... O75394 38942792
    919611 8xt1:Lh (3.1) BS01 rna N/A GO:0003735 ... Q9BQ48 38942792
    919612 8xt1:Li (3.1) BS01 rna N/A GO:0003735 ... Q9NZE8 38942792
    919613 8xt1:Lj (3.1) BS01 rna N/A GO:0003735 ... Q9P0J6 38942792
    919614 8xt1:Lj (3.1) BS02 ZN N/A GO:0003735 ... Q9P0J6 38942792
    919615 8xt1:Lk (3.1) BS01 rna N/A GO:0003723 ... Q9BZE1 38942792
    919616 8xt1:Ll (3.1) BS01 rna N/A GO:0005515 ... Q96DV4 38942792
    919617 8xt1:Ll (3.1) BS02 rna N/A GO:0005515 ... Q96DV4 38942792
    919618 8xt1:Ln (3.1) BS01 rna N/A GO:0003723 ... Q9NQ50 38942792
    919619 8xt1:Lo (3.1) BS01 rna N/A GO:0003723 ... Q8IXM3 38942792
    919620 8xt1:Lp (3.1) BS01 rna N/A GO:0003723 ... Q9Y6G3 38942792
    919621 8xt1:Lq (3.1) BS01 rna N/A GO:0003723 ... Q8N983 38942792
    919622 8xt1:Lr (3.1) BS01 rna N/A GO:0003723 ... Q9H9J2 38942792
    919623 8xt1:Lu (3.1) BS01 rna N/A GO:0003735 ... Q9HD33 38942792
    919624 8xt1:Lv (3.1) BS01 rna N/A GO:0005515 ... Q96GC5 38942792
    919625 8xt1:Lv (3.1) BS02 rna N/A GO:0005515 ... Q96GC5 38942792
    919626 8xt1:Lw (3.1) BS01 rna N/A GO:0003735 ... Q13405 38942792
    919627 8xt1:Ly (3.1) BS01 rna N/A GO:0003735 ... Q4U2R6 38942792
    919628 8xt1:Lz (3.1) BS01 rna N/A GO:0003735 ... Q86TS9 38942792
    919629 8xt1:SR (3.1) BS01 rna N/A GO:0003735 ... Q9NVS2 38942792
    919630 8xt1:Sf (3.1) BS01 rna N/A GO:0003723 ... Q9NP92 38942792
    919631 8xt2:L4 (3.3) BS01 rna N/A GO:0003723 ... Q6P161 38942792
    919632 8xt2:L6 (3.3) BS01 rna N/A GO:0003735 ... Q9BQC6 38942792
    919633 8xt2:L8 (3.3) BS01 rna N/A GO:0003735 ... Q8TAE8 38942792
    919634 8xt2:LB (3.3) BS01 rna N/A GO:0003723 ... Q5T653 38942792
    919635 8xt2:LB (3.3) BS02 MG N/A GO:0003723 ... Q5T653 38942792
    919636 8xt2:LC (3.3) BS01 rna N/A GO:0003723 ... P09001 38942792
    919637 8xt2:LD (3.3) BS01 rna N/A GO:0003723 ... Q9BYD3 38942792
    919638 8xt2:LI (3.3) BS01 rna N/A GO:0003723 ... Q9BYD2 38942792
    919639 8xt2:LJ (3.3) BS01 rna N/A GO:0003723 ... Q7Z7H8 38942792
    919640 8xt2:LK (3.3) BS01 rna N/A GO:0003723 ... Q9Y3B7 38942792
    919641 8xt2:LM (3.3) BS01 rna N/A GO:0003723 ... Q9BYD1 38942792
    919642 8xt2:LN (3.3) BS01 rna N/A GO:0003723 ... Q6P1L8 38942792
    919643 8xt2:LO (3.3) BS01 rna N/A GO:0003723 ... Q9P015 38942792
    919644 8xt2:LP (3.3) BS01 rna N/A GO:0003735 ... Q9NX20 38942792
    919645 8xt2:LQ (3.3) BS01 rna N/A GO:0003735 ... Q9NRX2 38942792
    919646 8xt2:LR (3.3) BS01 rna N/A GO:0003735 ... Q9H0U6 38942792
    919647 8xt2:LR (3.3) BS02 rna N/A GO:0003735 ... Q9H0U6 38942792
    919648 8xt2:LS (3.3) BS01 rna N/A GO:0003735 ... P49406 38942792
    919649 8xt2:LT (3.3) BS01 rna N/A GO:0003723 ... Q9BYC9 38942792
    919650 8xt2:LU (3.3) BS01 rna N/A GO:0003723 ... Q7Z2W9 38942792
    919651 8xt2:LV (3.3) BS01 rna N/A GO:0003735 ... Q9NWU5 38942792
    919652 8xt2:LW (3.3) BS01 rna N/A GO:0003723 ... Q16540 38942792
    919653 8xt2:LX (3.3) BS01 rna N/A GO:0003723 ... Q96A35 38942792
    919654 8xt2:La (3.3) BS01 rna N/A GO:0003723 ... Q9P0M9 38942792
    919655 8xt2:Lb (3.3) BS01 rna N/A GO:0003723 ... Q13084 38942792
    919656 8xt2:Ld (3.3) BS01 rna N/A GO:0003735 ... Q8TCC3 38942792
    919657 8xt2:Lf (3.3) BS01 rna N/A GO:0003723 ... Q9BYC8 38942792
    919658 8xt2:Lf (3.3) BS02 ZN N/A GO:0003723 ... Q9BYC8 38942792
    919659 8xt2:Lg (3.3) BS01 rna N/A GO:0003735 ... O75394 38942792
    919660 8xt2:Lh (3.3) BS01 rna N/A GO:0003735 ... Q9BQ48 38942792
    919661 8xt2:Li (3.3) BS01 rna N/A GO:0003735 ... Q9NZE8 38942792
    919662 8xt2:Lj (3.3) BS01 rna N/A GO:0003735 ... Q9P0J6 38942792
    919663 8xt2:Lj (3.3) BS02 ZN N/A GO:0003735 ... Q9P0J6 38942792
    919664 8xt2:Lk (3.3) BS01 rna N/A GO:0003723 ... Q9BZE1 38942792
    919665 8xt2:Ll (3.3) BS01 rna N/A GO:0005515 ... Q96DV4 38942792
    919666 8xt2:Ll (3.3) BS02 rna N/A GO:0005515 ... Q96DV4 38942792
    919667 8xt2:Ln (3.3) BS01 rna N/A GO:0003723 ... Q9NQ50 38942792
    919668 8xt2:Lo (3.3) BS01 rna N/A GO:0003723 ... Q8IXM3 38942792
    919669 8xt2:Lp (3.3) BS01 rna N/A GO:0003723 ... Q9Y6G3 38942792
    919670 8xt2:Lq (3.3) BS01 rna N/A GO:0003723 ... Q8N983 38942792
    919671 8xt2:Lr (3.3) BS01 rna N/A GO:0003723 ... Q9H9J2 38942792
    919672 8xt2:Lu (3.3) BS01 rna N/A GO:0003735 ... Q9HD33 38942792
    919673 8xt2:Lv (3.3) BS01 rna N/A GO:0005515 ... Q96GC5 38942792
    919674 8xt2:Lv (3.3) BS02 rna N/A GO:0005515 ... Q96GC5 38942792
    919675 8xt2:Lw (3.3) BS01 rna N/A GO:0003735 ... Q13405 38942792
    919676 8xt2:Ly (3.3) BS01 rna N/A GO:0003735 ... Q4U2R6 38942792
    919677 8xt2:Lz (3.3) BS01 rna N/A GO:0003735 ... Q86TS9 38942792
    919678 8xt2:SB (3.3) BS01 rna N/A GO:0003735 ... Q9Y399 38942792
    919679 8xt2:SB (3.3) BS02 ZN N/A GO:0003735 ... Q9Y399 38942792
    919680 8xt2:SE (3.3) BS01 rna N/A GO:0003723 ... P82675 38942792
    919681 8xt2:SF (3.3) BS01 rna N/A GO:0003735 ... P82932 38942792
    919682 8xt2:SG (3.3) BS01 rna N/A GO:0003723 ... Q9Y2R9 38942792
    919683 8xt2:SI (3.3) BS01 rna N/A GO:0003723 ... P82933 38942792
    919684 8xt2:SJ (3.3) BS01 rna N/A GO:0005739 ... P82664 38942792
    919685 8xt2:SK (3.3) BS01 rna N/A GO:0003723 ... P82912 38942792
    919686 8xt2:SL (3.3) BS01 rna N/A GO:0003723 ... O15235 38942792
    919687 8xt2:SN (3.3) BS01 rna N/A GO:0003723 ... O60783 38942792
    919688 8xt2:SO (3.3) BS01 rna N/A GO:0003723 ... P82914 38942792
    919689 8xt2:SP (3.3) BS01 rna N/A GO:0003735 ... Q9Y3D3 38942792
    919690 8xt2:SQ (3.3) BS01 rna N/A GO:0003735 ... Q9Y2R5 38942792
    919691 8xt2:SR (3.3) BS01 rna N/A GO:0003735 ... Q9NVS2 38942792
    919692 8xt2:SS (3.3) BS01 rna N/A GO:0003735 ... Q9Y676 38942792
    919693 8xt2:SS (3.3) BS02 ZN N/A GO:0003735 ... Q9Y676 38942792
    919694 8xt2:ST (3.3) BS01 rna N/A GO:0003735 ... Q9Y3D5 38942792
    919695 8xt2:ST (3.3) BS02 ZN N/A GO:0003735 ... Q9Y3D5 38942792
    919696 8xt2:SW (3.3) BS01 rna N/A GO:0003723 ... P82921 38942792
    919697 8xt2:SY (3.3) BS01 rna N/A GO:0003723 ... Q9Y3D9 38942792
    919698 8xt2:SZ (3.3) BS01 rna N/A GO:0003723 ... Q96EL2 38942792
    919699 8xt2:Sa (3.3) BS01 rna N/A GO:0003735 ... P82663 38942792
    919700 8xt2:Sa (3.3) BS02 ZN N/A GO:0003735 ... P82663 38942792
    919701 8xt2:Sb (3.3) BS01 rna N/A GO:0003723 ... Q9BYN8 38942792
    919702 8xt2:Sc (3.3) BS01 rna N/A GO:0000049 ... Q92552 38942792
    919703 8xt2:Se (3.3) BS01 rna N/A GO:0003723 ... P51398 38942792
    919704 8xt2:Se (3.3) BS02 GDP N/A GO:0003723 ... P51398 38942792
    919705 8xt2:Sf (3.3) BS01 rna N/A GO:0003723 ... Q9NP92 38942792
    919706 8xt2:Si (3.3) BS01 rna N/A GO:0003735 ... Q9Y291 38942792
    919707 8xt2:Sj (3.3) BS01 rna N/A GO:0003735 ... P82930 38942792
    919708 8xt2:Sk (3.3) BS01 rna N/A GO:0003723 ... P82673 38942792
    919709 8xt2:Sm (3.3) BS01 rna N/A GO:0001650 ... Q96BP2 38942792
    919710 8xt2:Sn (3.3) BS01 rna N/A GO:0005515 ... Q9NWT8 38942792
    919711 8xt2:Sn (3.3) BS02 rna N/A GO:0005515 ... Q9NWT8 38942792
    919712 8xt3:L4 (3.1) BS01 rna N/A GO:0003723 ... Q6P161 38942792
    919713 8xt3:L6 (3.1) BS01 rna N/A GO:0003735 ... Q9BQC6 38942792
    919714 8xt3:L8 (3.1) BS01 rna N/A GO:0003735 ... Q8TAE8 38942792
    919715 8xt3:LB (3.1) BS01 rna N/A GO:0003723 ... Q5T653 38942792
    919716 8xt3:LC (3.1) BS01 rna N/A GO:0003723 ... P09001 38942792
    919717 8xt3:LD (3.1) BS01 rna N/A GO:0003723 ... Q9BYD3 38942792
    919718 8xt3:LI (3.1) BS01 rna N/A GO:0003723 ... Q9BYD2 38942792
    919719 8xt3:LJ (3.1) BS01 rna N/A GO:0003723 ... Q7Z7H8 38942792
    919720 8xt3:LK (3.1) BS01 rna N/A GO:0003723 ... Q9Y3B7 38942792
    919721 8xt3:LM (3.1) BS01 rna N/A GO:0003723 ... Q9BYD1 38942792
    919722 8xt3:LN (3.1) BS01 rna N/A GO:0003723 ... Q6P1L8 38942792
    919723 8xt3:LO (3.1) BS01 rna N/A GO:0003723 ... Q9P015 38942792
    919724 8xt3:LP (3.1) BS01 rna N/A GO:0003735 ... Q9NX20 38942792
    919725 8xt3:LQ (3.1) BS01 rna N/A GO:0003735 ... Q9NRX2 38942792
    919726 8xt3:LR (3.1) BS01 rna N/A GO:0003735 ... Q9H0U6 38942792
    919727 8xt3:LR (3.1) BS02 rna N/A GO:0003735 ... Q9H0U6 38942792
    919728 8xt3:LS (3.1) BS01 rna N/A GO:0003735 ... P49406 38942792
    919729 8xt3:LT (3.1) BS01 rna N/A GO:0003723 ... Q9BYC9 38942792
    919730 8xt3:LU (3.1) BS01 rna N/A GO:0003723 ... Q7Z2W9 38942792
    919731 8xt3:LV (3.1) BS01 rna N/A GO:0003735 ... Q9NWU5 38942792
    919732 8xt3:LW (3.1) BS01 rna N/A GO:0003723 ... Q16540 38942792
    919733 8xt3:LX (3.1) BS01 rna N/A GO:0003723 ... Q96A35 38942792
    919734 8xt3:La (3.1) BS01 rna N/A GO:0003723 ... Q9P0M9 38942792
    919735 8xt3:Lb (3.1) BS01 rna N/A GO:0003723 ... Q13084 38942792
    919736 8xt3:Ld (3.1) BS01 rna N/A GO:0003735 ... Q8TCC3 38942792
    919737 8xt3:Lf (3.1) BS01 rna N/A GO:0003723 ... Q9BYC8 38942792
    919738 8xt3:Lf (3.1) BS02 ZN N/A GO:0003723 ... Q9BYC8 38942792
    919739 8xt3:Lg (3.1) BS01 rna N/A GO:0003735 ... O75394 38942792
    919740 8xt3:Lh (3.1) BS01 rna N/A GO:0003735 ... Q9BQ48 38942792
    919741 8xt3:Li (3.1) BS01 rna N/A GO:0003735 ... Q9NZE8 38942792
    919742 8xt3:Lj (3.1) BS01 rna N/A GO:0003735 ... Q9P0J6 38942792
    919743 8xt3:Lj (3.1) BS02 ZN N/A GO:0003735 ... Q9P0J6 38942792
    919744 8xt3:Lk (3.1) BS01 rna N/A GO:0003723 ... Q9BZE1 38942792
    919745 8xt3:Ll (3.1) BS01 rna N/A GO:0005515 ... Q96DV4 38942792
    919746 8xt3:Ll (3.1) BS02 rna N/A GO:0005515 ... Q96DV4 38942792
    919747 8xt3:Ln (3.1) BS01 rna N/A GO:0003723 ... Q9NQ50 38942792
    919748 8xt3:Lo (3.1) BS01 rna N/A GO:0003723 ... Q8IXM3 38942792
    919749 8xt3:Lp (3.1) BS01 rna N/A GO:0003723 ... Q9Y6G3 38942792
    919750 8xt3:Lq (3.1) BS01 rna N/A GO:0003723 ... Q8N983 38942792
    919751 8xt3:Lr (3.1) BS01 rna N/A GO:0003723 ... Q9H9J2 38942792
    919752 8xt3:Lu (3.1) BS01 rna N/A GO:0003735 ... Q9HD33 38942792
    919753 8xt3:Lv (3.1) BS01 rna N/A GO:0005515 ... Q96GC5 38942792
    919754 8xt3:Lv (3.1) BS02 rna N/A GO:0005515 ... Q96GC5 38942792
    919755 8xt3:Lw (3.1) BS01 rna N/A GO:0003735 ... Q13405 38942792
    919756 8xt3:Ly (3.1) BS01 rna N/A GO:0003735 ... Q4U2R6 38942792
    919757 8xt3:Lz (3.1) BS01 rna N/A GO:0003735 ... Q86TS9 38942792
    919758 8xt3:SR (3.1) BS01 rna N/A GO:0003735 ... Q9NVS2 38942792
    919759 8xt3:Sf (3.1) BS01 rna N/A GO:0003723 ... Q9NP92 38942792
    919760 8xtb:A (2.35) BS01 A1D5H N/A N/A N/A N/A
    919761 8xtb:B (2.35) BS01 A1D5H N/A N/A N/A N/A
    919762 8xtc:A (2.4) BS01 A1D5H N/A N/A N/A 39921299
    919763 8xtc:A (2.4) BS02 A1D5H N/A N/A N/A 39921299
    919764 8xtc:B (2.4) BS01 A1D5H N/A N/A N/A 39921299
    919765 8xtd:A (2.7) BS01 356 N/A GO:0006508 ... P0DTD1 41527419
    919766 8xte:A (1.99) BS01 SAH N/A GO:0005829 ... A0A0B5L781 39150221
    919767 8xte:A (1.99) BS02 A1LWB N/A GO:0005829 ... A0A0B5L781 39150221
    919768 8xte:B (1.99) BS01 SAH N/A GO:0005829 ... A0A0B5L781 39150221
    919769 8xte:B (1.99) BS02 A1LWB N/A GO:0005829 ... A0A0B5L781 39150221
    919770 8xte:C (1.99) BS01 SAH N/A GO:0005829 ... A0A0B5L781 39150221
    919771 8xte:C (1.99) BS02 A1LWB N/A GO:0005829 ... A0A0B5L781 39150221
    919772 8xte:D (1.99) BS01 SAH N/A GO:0005829 ... A0A0B5L781 39150221
    919773 8xte:D (1.99) BS02 A1LWB N/A GO:0005829 ... A0A0B5L781 39150221
    919774 8xte:E (1.99) BS01 SAH N/A GO:0005829 ... A0A0B5L781 39150221
    919775 8xte:E (1.99) BS02 A1LWB N/A GO:0005829 ... A0A0B5L781 39150221
    919776 8xte:F (1.99) BS01 SAH N/A GO:0005829 ... A0A0B5L781 39150221
    919777 8xte:F (1.99) BS02 A1LWB N/A GO:0005829 ... A0A0B5L781 39150221
    919778 8xtf:A (2.13) BS01 SAH N/A GO:0005829 ... A0A0B5L781 39150221
    919779 8xtf:A (2.13) BS02 A1LWC N/A GO:0005829 ... A0A0B5L781 39150221
    919780 8xtg:A (2.0) BS01 SAH N/A GO:0005829 ... A0A0B5L781 39150221
    919781 8xtg:A (2.0) BS02 A1LWD N/A GO:0005829 ... A0A0B5L781 39150221
    919782 8xtg:B (2.0) BS01 SAH N/A GO:0005829 ... A0A0B5L781 39150221
    919783 8xtg:B (2.0) BS02 A1LWD N/A GO:0005829 ... A0A0B5L781 39150221
    919784 8xtg:C (2.0) BS01 SAH N/A GO:0005829 ... A0A0B5L781 39150221
    919785 8xtg:C (2.0) BS02 A1LWD N/A GO:0005829 ... A0A0B5L781 39150221
    919786 8xtg:D (2.0) BS01 SAH N/A GO:0005829 ... A0A0B5L781 39150221
    919787 8xtg:D (2.0) BS02 A1LWD N/A GO:0005829 ... A0A0B5L781 39150221
    919788 8xtg:E (2.0) BS01 SAH N/A GO:0005829 ... A0A0B5L781 39150221
    919789 8xtg:E (2.0) BS02 A1LWD N/A GO:0005829 ... A0A0B5L781 39150221
    919790 8xtg:F (2.0) BS01 SAH N/A GO:0005829 ... A0A0B5L781 39150221
    919791 8xtg:F (2.0) BS02 A1LWD N/A GO:0005829 ... A0A0B5L781 39150221
    919792 8xtu:A (2.5) BS01 GDP N/A GO:0003924 ... Q6VN21 N/A
    919793 8xtv:A (1.994) BS01 CO N/A GO:0000139 ... Q16FX9 40412679
    919794 8xtv:A (1.994) BS02 A1LW3 N/A GO:0000139 ... Q16FX9 40412679
    919795 8xtv:B (1.994) BS01 CO N/A GO:0000139 ... Q16FX9 40412679
    919796 8xtv:B (1.994) BS02 A1LW3 N/A GO:0000139 ... Q16FX9 40412679
    919797 8xty:A (2.7) BS01 A1LWL N/A GO:0006091 ... P42212
    Q16572
    39806024
    919798 8xtz:A (1.85) BS01 A1LWM N/A GO:0071949 ... B5M9L6 40199722
    919799 8xtz:A (1.85) BS02 FAD N/A GO:0071949 ... B5M9L6 40199722
    919800 8xtz:B (1.85) BS01 A1LWM N/A GO:0071949 ... B5M9L6 40199722

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).