SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 4591 4592 4593 4594 4595 4596 4597 4598 4599 4600 4601 4602 4603 4604 4605 4606 4607 4608 4609 4610 4611 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    920001 9ax7:v (2.63) BS02 rna N/A GO:0003735 ... P0A7M0 39222680
    920002 9ax7:w (2.63) BS01 rna N/A GO:0003735 ... A0A1X3JA73 39222680
    920003 9ax7:x (2.63) BS01 rna N/A GO:0003735 ... C3SQY2 39222680
    920004 9ax7:y (2.63) BS01 rna N/A GO:0003735 ... C3SR32 39222680
    920005 9ax7:y (2.63) BS02 rna N/A GO:0003735 ... C3SR32 39222680
    920006 9ax7:z (2.63) BS01 rna N/A GO:0003735 ... C3TE02 39222680
    920007 9ax8:0 (2.6) BS01 rna N/A GO:0003735 ... C3SSG7 39222680
    920008 9ax8:0 (2.6) BS02 rna N/A GO:0003735 ... C3SSG7 39222680
    920009 9ax8:1 (2.6) BS01 rna N/A GO:0003735 ... A0A0E2KZD0 39222680
    920010 9ax8:2 (2.6) BS01 rna N/A GO:0003735 ... N/A 39222680
    920011 9ax8:3 (2.6) BS01 rna N/A GO:0000027 ... P0AG51 39222680
    920012 9ax8:3 (2.6) BS02 rna N/A GO:0000027 ... P0AG51 39222680
    920013 9ax8:4 (2.6) BS01 rna N/A GO:0000027 ... P60438 39222680
    920014 9ax8:5 (2.6) BS01 rna N/A GO:0003735 ... A0A828UBL8 39222680
    920015 9ax8:6 (2.6) BS01 rna N/A GO:0003735 ... N/A 39222680
    920016 9ax8:7 (2.6) BS01 rna N/A GO:0003735 ... B7MGC4 39222680
    920017 9ax8:8 (2.6) BS01 rna N/A GO:0003735 ... N/A 39222680
    920018 9ax8:9 (2.6) BS01 rna N/A GO:0000027 ... P60422 39222680
    920019 9ax8:E (2.6) BS01 rna N/A GO:0003735 ... A1AGK6 39222680
    920020 9ax8:F (2.6) BS01 rna N/A GO:0000049 ... A0A4P8BX24 39222680
    920021 9ax8:F (2.6) BS02 rna N/A GO:0000049 ... A0A4P8BX24 39222680
    920022 9ax8:H (2.6) BS01 rna N/A GO:0002181 ... C3SR17 39222680
    920023 9ax8:J (2.6) BS01 rna N/A GO:0003735 ... N/A 39222680
    920024 9ax8:K (2.6) BS01 rna N/A GO:0003735 ... S1NW45 39222680
    920025 9ax8:K (2.6) BS02 rna N/A GO:0003735 ... S1NW45 39222680
    920026 9ax8:L (2.6) BS01 rna N/A GO:0003735 ... A0A037Y8L6 39222680
    920027 9ax8:M (2.6) BS01 rna N/A GO:0000027 ... P0ADY7 39222680
    920028 9ax8:M (2.6) BS02 rna N/A GO:0000027 ... P0ADY7 39222680
    920029 9ax8:N (2.6) BS01 rna N/A GO:0003735 ... A0A2T1LEK9 39222680
    920030 9ax8:O (2.6) BS01 rna N/A GO:0003735 ... N/A 39222680
    920031 9ax8:O (2.6) BS02 rna N/A GO:0003735 ... N/A 39222680
    920032 9ax8:P (2.6) BS01 rna N/A GO:0003735 ... S1PSA3 39222680
    920033 9ax8:P (2.6) BS02 rna N/A GO:0003735 ... S1PSA3 39222680
    920034 9ax8:Q (2.6) BS01 rna N/A GO:0000027 ... C3T7Q7 39222680
    920035 9ax8:R (2.6) BS01 rna N/A GO:0003723 ... C3SSG2 39222680
    920036 9ax8:S (2.6) BS01 rna N/A GO:0002181 ... P61175 39222680
    920037 9ax8:T (2.6) BS01 rna N/A GO:0003735 ... C3SQV2 39222680
    920038 9ax8:U (2.6) BS01 rna N/A GO:0003723 ... A0A7U9LWC1 39222680
    920039 9ax8:V (2.6) BS01 rna N/A GO:0003735 ... N/A 39222680
    920040 9ax8:Y (2.6) BS01 rna N/A GO:0003735 ... A0A0E2L017 39222680
    920041 9ax8:b (2.6) BS01 rna N/A GO:0003735 ... N/A 39222680
    920042 9ax8:c (2.6) BS01 rna N/A GO:0003676 ... P0A7V5 39222680
    920043 9ax8:d (2.6) BS01 rna N/A GO:0003723 ... C3SR62 39222680
    920044 9ax8:e (2.6) BS01 rna N/A GO:0003723 ... N/A 39222680
    920045 9ax8:f (2.6) BS01 rna N/A GO:0003735 ... P02358 39222680
    920046 9ax8:g (2.6) BS01 rna N/A GO:0003723 ... P02359 39222680
    920047 9ax8:h (2.6) BS01 rna N/A GO:0003735 ... A0A828U358 39222680
    920048 9ax8:i (2.6) BS01 rna N/A GO:0003735 ... N/A 39222680
    920049 9ax8:j (2.6) BS01 rna N/A GO:0000049 ... A0A0H3EQD3 39222680
    920050 9ax8:k (2.6) BS01 rna N/A GO:0002181 ... P0A7R9 39222680
    920051 9ax8:l (2.6) BS01 rna N/A GO:0000028 ... C3SQR7 39222680
    920052 9ax8:m (2.6) BS01 rna N/A GO:0000049 ... S1P5F8 39222680
    920053 9ax8:n (2.6) BS01 rna N/A GO:0003735 ... A0A090BZT4 39222680
    920054 9ax8:o (2.6) BS01 rna N/A GO:0003735 ... N/A 39222680
    920055 9ax8:o (2.6) BS02 rna N/A GO:0003735 ... N/A 39222680
    920056 9ax8:p (2.6) BS01 rna N/A GO:0000028 ... C3SYP2 39222680
    920057 9ax8:q (2.6) BS01 rna N/A GO:0003735 ... N/A 39222680
    920058 9ax8:r (2.6) BS01 rna N/A GO:0003735 ... P0A7T9 39222680
    920059 9ax8:s (2.6) BS01 rna N/A GO:0003723 ... A0A7U9LGZ0 39222680
    920060 9ax8:t (2.6) BS01 rna N/A GO:0000028 ... C3TRH7 39222680
    920061 9ax8:u (2.6) BS01 rna N/A GO:0003735 ... A0A5C9AJ78 39222680
    920062 9ax8:z (2.6) BS01 rna N/A GO:0003743 ... A0A376TVY0 39222680
    920063 9ax8:z (2.6) BS02 rna N/A GO:0003743 ... A0A376TVY0 39222680
    920064 9ax8:z (2.6) BS03 rna N/A GO:0003743 ... A0A376TVY0 39222680
    920065 9ax8:z (2.6) BS04 MG N/A GO:0003743 ... A0A376TVY0 39222680
    920066 9ax9:A (2.0) BS01 peptide N/A GO:0004197 ... A0A2K8BQT2 39339895
    920067 9axa:B (4.36) BS01 A1AHE 2.7.12.2 GO:0000165 ... Q02750 38588399
    920068 9axa:D (4.36) BS01 A1AHE 2.7.12.2 GO:0000165 ... Q02750 38588399
    920069 9axc:B (4.16) BS01 A1AHE 2.7.12.2 GO:0000165 ... Q02750 38588399
    920070 9axc:D (4.16) BS01 A1AHE 2.7.12.2 GO:0000165 ... Q02750 38588399
    920071 9axf:Q (3.5) BS01 TCR ? GO:0004930 ... P41180 38632411
    920072 9axf:Q (3.5) BS02 CA ? GO:0004930 ... P41180 38632411
    920073 9axf:Q (3.5) BS03 CA ? GO:0004930 ... P41180 38632411
    920074 9axf:Q (3.5) BS04 CA ? GO:0004930 ... P41180 38632411
    920075 9axf:Q (3.5) BS05 9IG ? GO:0004930 ... P41180 38632411
    920076 9axf:Q (3.5) BS06 Y01 ? GO:0004930 ... P41180 38632411
    920077 9axf:Q (3.5) BS07 CLR ? GO:0004930 ... P41180 38632411
    920078 9axf:Q (3.5) BS08 CLR ? GO:0004930 ... P41180 38632411
    920079 9axf:R (3.5) BS01 TCR ? GO:0004930 ... P41180 38632411
    920080 9axf:R (3.5) BS02 CA ? GO:0004930 ... P41180 38632411
    920081 9axf:R (3.5) BS03 9IG ? GO:0004930 ... P41180 38632411
    920082 9axf:R (3.5) BS04 AV0 ? GO:0004930 ... P41180 38632411
    920083 9axf:R (3.5) BS05 Y01 ? GO:0004930 ... P41180 38632411
    920084 9axf:R (3.5) BS06 Y01 ? GO:0004930 ... P41180 38632411
    920085 9axf:R (3.5) BS07 CLR ? GO:0004930 ... P41180 38632411
    920086 9axh:A (2.81) BS01 A1AHE 2.7.12.2 GO:0004672 ... Q02750 38588399
    920087 9axh:A (2.81) BS02 ANP 2.7.12.2 GO:0004672 ... Q02750 38588399
    920088 9axh:A (2.81) BS03 MG 2.7.12.2 GO:0004672 ... Q02750 38588399
    920089 9axh:B (2.81) BS01 A1AHE 2.7.12.2 GO:0004672 ... Q02750 38588399
    920090 9axh:B (2.81) BS02 ANP 2.7.12.2 GO:0004672 ... Q02750 38588399
    920091 9axh:B (2.81) BS03 MG 2.7.12.2 GO:0004672 ... Q02750 38588399
    920092 9axh:C (2.81) BS01 ANP 2.7.11.1 GO:0004672 ... Q8IVT5 38588399
    920093 9axh:C (2.81) BS02 MG 2.7.11.1 GO:0004672 ... Q8IVT5 38588399
    920094 9axh:D (2.81) BS01 ANP 2.7.11.1 GO:0004672 ... Q8IVT5 38588399
    920095 9axh:D (2.81) BS02 ANP 2.7.11.1 GO:0004672 ... Q8IVT5 38588399
    920096 9axh:D (2.81) BS03 MG 2.7.11.1 GO:0004672 ... Q8IVT5 38588399
    920097 9axj:A (1.5) BS01 4LM N/A N/A A0A9P2TCP3 39391268
    920098 9axk:D (3.8) BS01 MAN N/A N/A A1EAI1 39823319
    920099 9axk:M (3.8) BS01 MAN N/A N/A A1EAI1 39823319
    920100 9axl:A (3.3) BS01 CA N/A N/A P08514 38968144
    920101 9axl:A (3.3) BS02 CA N/A N/A P08514 38968144
    920102 9axl:A (3.3) BS03 CA N/A N/A P08514 38968144
    920103 9axl:A (3.3) BS04 CA N/A N/A P08514 38968144
    920104 9axl:B (3.3) BS01 CA N/A N/A P05106 38968144
    920105 9axl:B (3.3) BS02 CA N/A N/A P05106 38968144
    920106 9axm:A (2.42) BS01 A1AHE 2.7.12.2 GO:0004672 ... Q02750 38588399
    920107 9axm:A (2.42) BS02 MG 2.7.12.2 GO:0004672 ... Q02750 38588399
    920108 9axm:A (2.42) BS03 ANP 2.7.12.2 GO:0004672 ... Q02750 38588399
    920109 9axm:B (2.42) BS01 A1AHE 2.7.11.1 GO:0004672 ... P10398 38588399
    920110 9axm:B (2.42) BS02 MG 2.7.11.1 GO:0004672 ... P10398 38588399
    920111 9axm:B (2.42) BS03 ANP 2.7.11.1 GO:0004672 ... P10398 38588399
    920112 9axm:C (2.42) BS01 A1AHE 2.7.12.2 GO:0004672 ... Q02750 38588399
    920113 9axn:A (2.4) BS01 7V7 N/A N/A N/A N/A
    920114 9axn:B (2.4) BS01 7V7 N/A N/A N/A N/A
    920115 9axn:C (2.4) BS01 7V7 N/A N/A N/A N/A
    920116 9axn:D (2.4) BS01 7V7 N/A N/A N/A N/A
    920117 9axn:E (2.4) BS01 7V7 N/A N/A N/A N/A
    920118 9axn:F (2.4) BS01 7V7 N/A N/A N/A N/A
    920119 9axn:H (2.4) BS01 7V7 N/A N/A N/A N/A
    920120 9axn:I (2.4) BS01 7V7 N/A N/A N/A N/A
    920121 9axn:J (2.4) BS01 7V7 N/A N/A N/A N/A
    920122 9axn:L (2.4) BS01 7V7 N/A N/A N/A N/A
    920123 9axn:M (2.4) BS01 7V7 N/A N/A N/A N/A
    920124 9axn:N (2.4) BS01 7V7 N/A N/A N/A N/A
    920125 9axn:O (2.4) BS01 7V7 N/A N/A N/A N/A
    920126 9axn:P (2.4) BS01 7V7 N/A N/A N/A N/A
    920127 9axn:Q (2.4) BS01 7V7 N/A N/A N/A N/A
    920128 9axn:R (2.4) BS01 7V7 N/A N/A N/A N/A
    920129 9axo:H (2.1) BS01 7V7 N/A N/A N/A N/A
    920130 9axo:L (2.1) BS01 7V7 N/A N/A N/A N/A
    920131 9axp:A (2.4) BS01 A1AH7 N/A N/A N/A N/A
    920132 9axp:B (2.4) BS01 A1AH7 N/A N/A N/A N/A
    920133 9axp:H (2.4) BS01 A1AH7 N/A N/A N/A N/A
    920134 9axp:L (2.4) BS01 A1AH7 N/A N/A N/A N/A
    920135 9axr:H (3.3) BS01 7V7 N/A N/A N/A N/A
    920136 9axr:L (3.3) BS01 7V7 N/A N/A N/A N/A
    920137 9axt:AD (2.4) BS01 rna N/A GO:0000028 ... Q9Y7L8 39379376
    920138 9axt:AE (2.4) BS01 rna N/A GO:0002181 ... O94438 39379376
    920139 9axt:AE (2.4) BS02 rna N/A GO:0002181 ... O94438 39379376
    920140 9axt:AF (2.4) BS01 rna N/A GO:0002181 ... O74892 39379376
    920141 9axt:AG (2.4) BS01 rna N/A GO:0002181 ... O60128 39379376
    920142 9axt:AH (2.4) BS01 rna N/A GO:0002181 ... Q9P4W9 39379376
    920143 9axt:AI (2.4) BS01 rna N/A GO:0000028 ... O14277 39379376
    920144 9axt:AJ (2.4) BS01 rna N/A GO:0002181 ... Q9C0Z7 39379376
    920145 9axt:AK (2.4) BS01 rna N/A GO:0002181 ... Q10101 39379376
    920146 9axt:AL (2.4) BS01 rna N/A GO:0000462 ... Q9P7B2 39379376
    920147 9axt:AL (2.4) BS02 rna N/A GO:0000462 ... Q9P7B2 39379376
    920148 9axt:AM (2.4) BS01 rna N/A GO:0002181 ... O59675 39379376
    920149 9axt:AN (2.4) BS01 rna N/A GO:0002181 ... O13614 39379376
    920150 9axt:AO (2.4) BS01 rna N/A GO:0002181 ... P0CT74 39379376
    920151 9axt:AP (2.4) BS01 rna N/A GO:0002181 ... O14062 39379376
    920152 9axt:AQ (2.4) BS01 rna N/A GO:0002181 ... P28189 39379376
    920153 9axt:AR (2.4) BS01 rna N/A GO:0000028 ... P0CT57 39379376
    920154 9axt:AS (2.4) BS01 rna N/A GO:0000028 ... Q9UTQ6 39379376
    920155 9axt:AT (2.4) BS01 rna N/A GO:0000462 ... P0CT64 39379376
    920156 9axt:AU (2.4) BS01 rna N/A GO:0002182 ... O42984 39379376
    920157 9axt:AV (2.4) BS01 rna N/A GO:0002181 ... P0CT67 39379376
    920158 9axt:AW (2.4) BS01 rna N/A GO:0000028 ... P58234 39379376
    920159 9axt:Aa (2.4) BS01 rna N/A GO:0002181 ... O74893 39379376
    920160 9axt:Ac (2.4) BS01 rna N/A GO:0002181 ... P0CT58 39379376
    920161 9axt:Ad (2.4) BS01 rna N/A GO:0002181 ... P0CT75 39379376
    920162 9axt:Ae (2.4) BS01 rna N/A GO:0002182 ... O13784 39379376
    920163 9axt:Af (2.4) BS01 rna N/A GO:0002181 ... P79009 39379376
    920164 9axt:Ag (2.4) BS01 rna N/A GO:0002181 ... Q9UTG4 39379376
    920165 9axt:Ag (2.4) BS02 ZN N/A GO:0002181 ... Q9UTG4 39379376
    920166 9axt:Ah (2.4) BS01 rna N/A GO:0000028 ... O74330 39379376
    920167 9axt:Ah (2.4) BS02 ZN N/A GO:0000028 ... O74330 39379376
    920168 9axt:Ai (2.4) BS01 rna N/A GO:0000028 ... P0CT79 39379376
    920169 9axt:Aj (2.4) BS01 rna N/A GO:0002181 ... O74329 39379376
    920170 9axt:Ak (2.4) BS01 rna N/A GO:0002181 ... P0CT63 39379376
    920171 9axt:B0 (2.4) BS01 rna N/A GO:0002181 ... Q9UTI8 39379376
    920172 9axt:B0 (2.4) BS02 ZN N/A GO:0002181 ... Q9UTI8 39379376
    920173 9axt:B1 (2.4) BS01 rna N/A GO:0002181 ... Q9HGL8 39379376
    920174 9axt:B1 (2.4) BS02 rna N/A GO:0002181 ... Q9HGL8 39379376
    920175 9axt:B1 (2.4) BS03 ZN N/A GO:0002181 ... Q9HGL8 39379376
    920176 9axt:BN (2.4) BS01 rna N/A GO:0002181 ... P0CT72 39379376
    920177 9axt:BN (2.4) BS02 rna N/A GO:0002181 ... P0CT72 39379376
    920178 9axt:BO (2.4) BS01 rna N/A GO:0002181 ... P40372 39379376
    920179 9axt:BP (2.4) BS01 rna N/A GO:0002181 ... P35679 39379376
    920180 9axt:BP (2.4) BS02 rna N/A GO:0002181 ... P35679 39379376
    920181 9axt:BQ (2.4) BS01 rna N/A GO:0000027 ... O74306 39379376
    920182 9axt:BQ (2.4) BS02 rna N/A GO:0000027 ... O74306 39379376
    920183 9axt:BR (2.4) BS01 rna N/A GO:0002181 ... P79071 39379376
    920184 9axt:BS (2.4) BS01 rna N/A GO:0000171 ... O60143 39379376
    920185 9axt:BS (2.4) BS02 rna N/A GO:0000171 ... O60143 39379376
    920186 9axt:BT (2.4) BS01 rna N/A GO:0000470 ... O13672 39379376
    920187 9axt:BT (2.4) BS02 rna N/A GO:0000470 ... O13672 39379376
    920188 9axt:BU (2.4) BS01 rna N/A GO:0002181 ... O74905 39379376
    920189 9axt:BV (2.4) BS01 rna N/A GO:0002181 ... Q09127 39379376
    920190 9axt:BV (2.4) BS02 rna N/A GO:0002181 ... Q09127 39379376
    920191 9axt:BW (2.4) BS01 rna N/A GO:0002181 ... P0CT77 39379376
    920192 9axt:BW (2.4) BS02 rna N/A GO:0002181 ... P0CT77 39379376
    920193 9axt:BX (2.4) BS01 rna N/A GO:0002181 ... O74175 39379376
    920194 9axt:BX (2.4) BS02 rna N/A GO:0002181 ... O74175 39379376
    920195 9axt:BY (2.4) BS01 rna N/A GO:0002181 ... O94238 39379376
    920196 9axt:BZ (2.4) BS01 rna N/A GO:0002181 ... Q9US22 39379376
    920197 9axt:BZ (2.4) BS02 rna N/A GO:0002181 ... Q9US22 39379376
    920198 9axt:Ba (2.4) BS01 rna N/A GO:0002181 ... O42848 39379376
    920199 9axt:Bb (2.4) BS01 rna N/A GO:0002181 ... O14339 39379376
    920200 9axt:Bb (2.4) BS02 rna N/A GO:0002181 ... O14339 39379376

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).