SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    920601 8y09:A (2.87) BS03 dna N/A N/A A0ACD6BAZ6 39676682
    920602 8y09:A (2.87) BS04 rna N/A N/A A0ACD6BAZ6 39676682
    920603 8y09:E (2.87) BS01 rna N/A N/A A0ACD6BAZ6 39676682
    920604 8y09:E (2.87) BS02 rna N/A N/A A0ACD6BAZ6 39676682
    920605 8y09:E (2.87) BS03 dna N/A N/A A0ACD6BAZ6 39676682
    920606 8y09:E (2.87) BS04 dna N/A N/A A0ACD6BAZ6 39676682
    920607 8y0a:A (3.51) BS01 rna N/A N/A A0ACD6BAZ6 39676682
    920608 8y0a:A (3.51) BS02 dna N/A N/A A0ACD6BAZ6 39676682
    920609 8y0a:A (3.51) BS03 dna N/A N/A A0ACD6BAZ6 39676682
    920610 8y0a:E (3.51) BS01 rna N/A N/A A0ACD6BAZ6 39676682
    920611 8y0a:E (3.51) BS02 dna N/A N/A A0ACD6BAZ6 39676682
    920612 8y0a:E (3.51) BS03 dna N/A N/A A0ACD6BAZ6 39676682
    920613 8y0b:A (2.3) BS01 rna N/A GO:0004530 ... A0Q7Q2 39676682
    920614 8y0b:A (2.3) BS02 dna N/A GO:0004530 ... A0Q7Q2 39676682
    920615 8y0b:A (2.3) BS03 dna N/A GO:0004530 ... A0Q7Q2 39676682
    920616 8y0c:A (3.45) BS01 rna N/A GO:0004530 ... A0Q7Q2 39676682
    920617 8y0c:A (3.45) BS02 dna N/A GO:0004530 ... A0Q7Q2 39676682
    920618 8y0c:A (3.45) BS03 dna N/A GO:0004530 ... A0Q7Q2 39676682
    920619 8y0d:A (3.92) BS01 rna N/A GO:0004519 ... J7RUA5 39676682
    920620 8y0d:A (3.92) BS02 dna N/A GO:0004519 ... J7RUA5 39676682
    920621 8y0e:A (3.0) BS01 ZN N/A GO:0000428 ... P42486 39779680
    920622 8y0e:A (3.0) BS02 ZN N/A GO:0000428 ... P42486 39779680
    920623 8y0e:A (3.0) BS03 MG N/A GO:0000428 ... P42486 39779680
    920624 8y0e:B (3.0) BS01 ZN N/A GO:0000428 ... P42487 39779680
    920625 8y0e:G (3.0) BS01 ZN N/A N/A Q65157 39779680
    920626 8y0e:G (3.0) BS02 ZN N/A N/A Q65157 39779680
    920627 8y0e:H (3.0) BS01 ZN N/A GO:0000428 ... P42488 39779680
    920628 8y0h:R (3.53) BS01 A1LW2 N/A GO:0002685 ... P49682 40155369
    920629 8y0l:A (2.15) BS01 MG N/A GO:0004553 ... Q0ZUL0 39971319
    920630 8y0l:A (2.15) BS02 MG N/A GO:0004553 ... Q0ZUL0 39971319
    920631 8y0l:A (2.15) BS03 NOJ N/A GO:0004553 ... Q0ZUL0 39971319
    920632 8y0l:B (2.15) BS01 MG N/A GO:0004553 ... Q0ZUL0 39971319
    920633 8y0l:B (2.15) BS02 MG N/A GO:0004553 ... Q0ZUL0 39971319
    920634 8y0l:B (2.15) BS03 NOJ N/A GO:0004553 ... Q0ZUL0 39971319
    920635 8y0l:C (2.15) BS01 MG N/A GO:0004553 ... Q0ZUL0 39971319
    920636 8y0l:C (2.15) BS02 MG N/A GO:0004553 ... Q0ZUL0 39971319
    920637 8y0l:C (2.15) BS03 NOJ N/A GO:0004553 ... Q0ZUL0 39971319
    920638 8y0l:D (2.15) BS01 MG N/A GO:0004553 ... Q0ZUL0 39971319
    920639 8y0l:D (2.15) BS02 MG N/A GO:0004553 ... Q0ZUL0 39971319
    920640 8y0l:D (2.15) BS03 NOJ N/A GO:0004553 ... Q0ZUL0 39971319
    920641 8y0m:A (2.3) BS01 MG N/A GO:0004553 ... Q0ZUL0 39971319
    920642 8y0m:A (2.3) BS02 NOJ N/A GO:0004553 ... Q0ZUL0 39971319
    920643 8y0m:B (2.3) BS01 MG N/A GO:0004553 ... Q0ZUL0 39971319
    920644 8y0m:B (2.3) BS02 MG N/A GO:0004553 ... Q0ZUL0 39971319
    920645 8y0m:B (2.3) BS03 NOJ N/A GO:0004553 ... Q0ZUL0 39971319
    920646 8y0m:C (2.3) BS01 MG N/A GO:0004553 ... Q0ZUL0 39971319
    920647 8y0m:C (2.3) BS02 NOJ N/A GO:0004553 ... Q0ZUL0 39971319
    920648 8y0m:D (2.3) BS01 MG N/A GO:0004553 ... Q0ZUL0 39971319
    920649 8y0m:D (2.3) BS02 MG N/A GO:0004553 ... Q0ZUL0 39971319
    920650 8y0m:D (2.3) BS03 NOJ N/A GO:0004553 ... Q0ZUL0 39971319
    920651 8y0n:R (3.07) BS01 A1LW2 N/A GO:0002685 ... P49682 40155369
    920652 8y0p:A (2.62) BS01 peptide ? GO:0007155 ... P35222 N/A
    920653 8y0p:A (2.62) BS02 PRO ? GO:0007155 ... P35222 N/A
    920654 8y0p:A (2.62) BS03 PRO ? GO:0007155 ... P35222 N/A
    920655 8y0p:B (2.62) BS01 PRO ? GO:0007155 ... P35222 N/A
    920656 8y0s:A () BS01 ZN N/A N/A N/A N/A
    920657 8y0s:A () BS02 ZN N/A N/A N/A N/A
    920658 8y0s:A () BS03 ZN N/A N/A N/A N/A
    920659 8y0s:B () BS01 ZN N/A N/A N/A N/A
    920660 8y0s:B () BS02 ZN N/A N/A N/A N/A
    920661 8y0s:B () BS03 ZN N/A N/A N/A N/A
    920662 8y0s:B () BS04 A1LXO N/A N/A N/A N/A
    920663 8y0s:C () BS01 ZN N/A N/A N/A N/A
    920664 8y0s:C () BS02 ZN N/A N/A N/A N/A
    920665 8y0s:C () BS03 ZN N/A N/A N/A N/A
    920666 8y0s:D () BS01 ZN N/A N/A N/A N/A
    920667 8y0s:D () BS02 ZN N/A N/A N/A N/A
    920668 8y0s:D () BS03 ZN N/A N/A N/A N/A
    920669 8y0u:5 (3.59) BS01 rna ? GO:0002182 ... P23301 38698775
    920670 8y0u:LA (3.59) BS01 rna ? GO:0002181 ... P0CX45 38698775
    920671 8y0u:LA (3.59) BS02 MG ? GO:0002181 ... P0CX45 38698775
    920672 8y0u:LB (3.59) BS01 rna ? GO:0000027 ... P14126 38698775
    920673 8y0u:LC (3.59) BS01 rna ? GO:0002181 ... P10664 38698775
    920674 8y0u:LC (3.59) BS02 rna ? GO:0002181 ... P10664 38698775
    920675 8y0u:LD (3.59) BS01 rna ? GO:0000027 ... P26321 38698775
    920676 8y0u:LD (3.59) BS02 rna ? GO:0000027 ... P26321 38698775
    920677 8y0u:LE (3.59) BS01 rna ? GO:0000027 ... P05739 38698775
    920678 8y0u:LF (3.59) BS01 rna ? GO:0000463 ... P05737 38698775
    920679 8y0u:LF (3.59) BS02 rna ? GO:0000463 ... P05737 38698775
    920680 8y0u:LG (3.59) BS01 rna ? GO:0000470 ... P17076 38698775
    920681 8y0u:LG (3.59) BS02 rna ? GO:0000470 ... P17076 38698775
    920682 8y0u:LH (3.59) BS01 rna ? GO:0002181 ... P05738 38698775
    920683 8y0u:LI (3.59) BS01 rna ? GO:0000027 ... P41805 38698775
    920684 8y0u:LI (3.59) BS02 rna ? GO:0000027 ... P41805 38698775
    920685 8y0u:LJ (3.59) BS01 rna ? GO:0000027 ... Q3E757 38698775
    920686 8y0u:LJ (3.59) BS02 rna ? GO:0000027 ... Q3E757 38698775
    920687 8y0u:LL (3.59) BS01 rna ? GO:0002181 ... Q12690 38698775
    920688 8y0u:LM (3.59) BS01 rna ? GO:0000027 ... P36105 38698775
    920689 8y0u:LN (3.59) BS01 rna ? GO:0000470 ... P05748 38698775
    920690 8y0u:LN (3.59) BS02 rna ? GO:0000470 ... P05748 38698775
    920691 8y0u:LN (3.59) BS03 MG ? GO:0000470 ... P05748 38698775
    920692 8y0u:LO (3.59) BS01 rna ? GO:0000470 ... P26784 38698775
    920693 8y0u:LP (3.59) BS01 rna ? GO:0000448 ... P05740 38698775
    920694 8y0u:LP (3.59) BS02 rna ? GO:0000448 ... P05740 38698775
    920695 8y0u:LQ (3.59) BS01 rna ? GO:0002181 ... P0CX49 38698775
    920696 8y0u:LR (3.59) BS01 rna ? GO:0002181 ... P0CX82 38698775
    920697 8y0u:LR (3.59) BS02 rna ? GO:0002181 ... P0CX82 38698775
    920698 8y0u:LS (3.59) BS01 rna ? GO:0002181 ... P0CX23 38698775
    920699 8y0u:LS (3.59) BS02 rna ? GO:0002181 ... P0CX23 38698775
    920700 8y0u:LT (3.59) BS01 rna ? GO:0002181 ... Q02753 38698775
    920701 8y0u:LT (3.59) BS02 rna ? GO:0002181 ... Q02753 38698775
    920702 8y0u:LU (3.59) BS01 rna ? GO:0002181 ... P05749 38698775
    920703 8y0u:LV (3.59) BS01 rna ? GO:0002181 ... P0CX41 38698775
    920704 8y0u:LW (3.59) BS01 rna ? GO:0002181 ... P04449 38698775
    920705 8y0u:LX (3.59) BS01 rna ? GO:0000027 ... P04456 38698775
    920706 8y0u:LX (3.59) BS02 rna ? GO:0000027 ... P04456 38698775
    920707 8y0u:LY (3.59) BS01 rna ? GO:0002181 ... P05743 38698775
    920708 8y0u:LY (3.59) BS02 rna ? GO:0002181 ... P05743 38698775
    920709 8y0u:LZ (3.59) BS01 rna ? GO:0002181 ... P0C2H6 38698775
    920710 8y0u:La (3.59) BS01 rna ? GO:0002181 ... P02406 38698775
    920711 8y0u:Lb (3.59) BS01 rna ? GO:0002181 ... P05747 38698775
    920712 8y0u:Lc (3.59) BS01 rna ? GO:0002181 ... P14120 38698775
    920713 8y0u:Ld (3.59) BS01 rna ? GO:0002181 ... P0C2H8 38698775
    920714 8y0u:Le (3.59) BS01 rna ? GO:0002181 ... P38061 38698775
    920715 8y0u:Le (3.59) BS02 MG ? GO:0002181 ... P38061 38698775
    920716 8y0u:Lf (3.59) BS01 rna ? GO:0000027 ... P05744 38698775
    920717 8y0u:Lg (3.59) BS01 rna ? GO:0002181 ... P87262 38698775
    920718 8y0u:Lg (3.59) BS02 ZN ? GO:0002181 ... P87262 38698775
    920719 8y0u:Lh (3.59) BS01 rna ? GO:0000463 ... P0CX84 38698775
    920720 8y0u:Lh (3.59) BS02 rna ? GO:0000463 ... P0CX84 38698775
    920721 8y0u:Li (3.59) BS01 rna ? GO:0000470 ... P05745 38698775
    920722 8y0u:Lj (3.59) BS01 rna ? GO:0000448 ... P49166 38698775
    920723 8y0u:Lj (3.59) BS02 rna ? GO:0000448 ... P49166 38698775
    920724 8y0u:Lj (3.59) BS03 ZN ? GO:0000448 ... P49166 38698775
    920725 8y0u:Lk (3.59) BS01 rna ? GO:0002181 ... P49167 38698775
    920726 8y0u:Ll (3.59) BS01 rna ? GO:0002181 ... P04650 38698775
    920727 8y0u:Ll (3.59) BS02 rna ? GO:0002181 ... P04650 38698775
    920728 8y0u:Lm (3.59) BS01 rna ? GO:0000027 ... P0CH08 38698775
    920729 8y0u:Lm (3.59) BS02 ZN ? GO:0000027 ... P0CH08 38698775
    920730 8y0u:Lo (3.59) BS01 rna ? GO:0002181 ... P0CX27 38698775
    920731 8y0u:Lo (3.59) BS02 ZN ? GO:0002181 ... P0CX27 38698775
    920732 8y0u:Lp (3.59) BS01 rna ? GO:0002181 ... P0CX25 38698775
    920733 8y0u:Lp (3.59) BS02 ZN ? GO:0002181 ... P0CX25 38698775
    920734 8y0u:P0 (3.59) BS01 rna ? GO:0000027 ... P05317 38698775
    920735 8y0u:P2 (3.59) BS01 rna ? GO:0000027 ... P0CX53 38698775
    920736 8y0u:SA (3.59) BS01 rna ? GO:0000028 ... P32905 38698775
    920737 8y0u:SB (3.59) BS01 rna ? GO:0000462 ... P33442 38698775
    920738 8y0u:SB (3.59) BS02 rna ? GO:0000462 ... P33442 38698775
    920739 8y0u:SC (3.59) BS01 rna ? GO:0000054 ... P25443 38698775
    920740 8y0u:SE (3.59) BS01 rna ? GO:0002181 ... P0CX35 38698775
    920741 8y0u:SE (3.59) BS02 MG ? GO:0002181 ... P0CX35 38698775
    920742 8y0u:SG (3.59) BS01 rna ? GO:0000462 ... P0CX37 38698775
    920743 8y0u:SH (3.59) BS01 rna ? GO:0002181 ... P26786 38698775
    920744 8y0u:SI (3.59) BS01 rna ? GO:0000462 ... P0CX39 38698775
    920745 8y0u:SI (3.59) BS02 rna ? GO:0000462 ... P0CX39 38698775
    920746 8y0u:SJ (3.59) BS01 rna ? GO:0000462 ... O13516 38698775
    920747 8y0u:SL (3.59) BS01 rna ? GO:0000028 ... P0CX47 38698775
    920748 8y0u:SN (3.59) BS01 rna ? GO:0000462 ... P05756 38698775
    920749 8y0u:SN (3.59) BS02 rna ? GO:0000462 ... P05756 38698775
    920750 8y0u:SO (3.59) BS01 rna ? GO:0000028 ... P39516 38698775
    920751 8y0u:SP (3.59) BS01 rna ? GO:0000054 ... Q01855 38698775
    920752 8y0u:SQ (3.59) BS01 rna ? GO:0000462 ... P0CX51 38698775
    920753 8y0u:SQ (3.59) BS02 MG ? GO:0000462 ... P0CX51 38698775
    920754 8y0u:ST (3.59) BS01 rna ? GO:0000054 ... P07280 38698775
    920755 8y0u:ST (3.59) BS02 MG ? GO:0000054 ... P07280 38698775
    920756 8y0u:ST (3.59) BS03 MG ? GO:0000054 ... P07280 38698775
    920757 8y0u:SU (3.59) BS01 rna ? GO:0000462 ... P38701 38698775
    920758 8y0u:SW (3.59) BS01 rna ? GO:0002181 ... P0C0W1 38698775
    920759 8y0u:SX (3.59) BS01 rna ? GO:0000462 ... P0CX29 38698775
    920760 8y0u:SY (3.59) BS01 rna ? GO:0000462 ... P0CX31 38698775
    920761 8y0u:SZ (3.59) BS01 rna ? GO:0002181 ... Q3E792 38698775
    920762 8y0u:Sa (3.59) BS01 rna ? GO:0000054 ... P39939 38698775
    920763 8y0u:Sb (3.59) BS01 rna ? GO:0000028 ... P35997 38698775
    920764 8y0u:Sc (3.59) BS01 rna ? GO:0000028 ... Q3E7X9 38698775
    920765 8y0u:Sd (3.59) BS01 rna ? GO:0002181 ... P41057 38698775
    920766 8y0u:Sd (3.59) BS02 MG ? GO:0002181 ... P41057 38698775
    920767 8y0u:Sd (3.59) BS03 ZN ? GO:0002181 ... P41057 38698775
    920768 8y0u:Se (3.59) BS01 rna ? GO:0002181 ... P0CX33 38698775
    920769 8y0u:Sf (3.59) BS01 rna ? GO:0000028 ... P05759 38698775
    920770 8y0u:Sf (3.59) BS02 ZN ? GO:0000028 ... P05759 38698775
    920771 8y0u:s (3.59) BS01 rna ? GO:0000723 ... P39015 38698775
    920772 8y0v:A (2.5) BS01 A1D5X N/A GO:0005506 ... Q9GZT9 39663371
    920773 8y0v:A (2.5) BS02 MN N/A GO:0005506 ... Q9GZT9 39663371
    920774 8y0w:5 (3.4) BS01 rna ? GO:0003723 ... P63241 38698775
    920775 8y0w:CB (3.4) BS01 rna 3.6.5.- GO:0002039 ... P13639 38698775
    920776 8y0w:CB (3.4) BS02 rna 3.6.5.- GO:0002039 ... P13639 38698775
    920777 8y0w:LA (3.4) BS01 rna ? GO:0002181 ... P62917 38698775
    920778 8y0w:LA (3.4) BS02 MG ? GO:0002181 ... P62917 38698775
    920779 8y0w:LB (3.4) BS01 rna ? GO:0002181 ... P39023 38698775
    920780 8y0w:LC (3.4) BS01 rna ? GO:0002181 ... P36578 38698775
    920781 8y0w:LC (3.4) BS02 rna ? GO:0002181 ... P36578 38698775
    920782 8y0w:LD (3.4) BS01 rna ? GO:0000027 ... P46777 38698775
    920783 8y0w:LD (3.4) BS02 rna ? GO:0000027 ... P46777 38698775
    920784 8y0w:LE (3.4) BS01 rna ? GO:0002181 ... Q02878 38698775
    920785 8y0w:LF (3.4) BS01 rna ? GO:0000463 ... P18124 38698775
    920786 8y0w:LF (3.4) BS02 rna ? GO:0000463 ... P18124 38698775
    920787 8y0w:LG (3.4) BS01 rna ? GO:0000470 ... P62424 38698775
    920788 8y0w:LG (3.4) BS02 rna ? GO:0000470 ... P62424 38698775
    920789 8y0w:LH (3.4) BS01 rna ? GO:0002181 ... P32969 38698775
    920790 8y0w:LI (3.4) BS01 rna ? GO:0000027 ... Q96L21 38698775
    920791 8y0w:LI (3.4) BS02 rna ? GO:0000027 ... Q96L21 38698775
    920792 8y0w:LJ (3.4) BS01 rna ? GO:0000027 ... P62913 38698775
    920793 8y0w:LJ (3.4) BS02 rna ? GO:0000027 ... P62913 38698775
    920794 8y0w:LL (3.4) BS01 rna ? GO:0002181 ... P26373 38698775
    920795 8y0w:LL (3.4) BS02 rna ? GO:0002181 ... P26373 38698775
    920796 8y0w:LM (3.4) BS01 rna ? GO:0002181 ... P50914 38698775
    920797 8y0w:LN (3.4) BS01 rna ? GO:0002181 ... P61313 38698775
    920798 8y0w:LN (3.4) BS02 rna ? GO:0002181 ... P61313 38698775
    920799 8y0w:LO (3.4) BS01 rna ? GO:0002181 ... P40429 38698775
    920800 8y0w:LP (3.4) BS01 rna ? GO:0002181 ... P18621 38698775

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).