SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    920801 8y0w:LP (3.4) BS02 rna ? GO:0002181 ... P18621 38698775
    920802 8y0w:LQ (3.4) BS01 rna ? GO:0002181 ... Q07020 38698775
    920803 8y0w:LR (3.4) BS01 rna ? GO:0002181 ... P84098 38698775
    920804 8y0w:LR (3.4) BS02 rna ? GO:0002181 ... P84098 38698775
    920805 8y0w:LS (3.4) BS01 rna ? GO:0002181 ... Q02543 38698775
    920806 8y0w:LS (3.4) BS02 rna ? GO:0002181 ... Q02543 38698775
    920807 8y0w:LT (3.4) BS01 rna ? GO:0001650 ... P46778 38698775
    920808 8y0w:LT (3.4) BS02 rna ? GO:0001650 ... P46778 38698775
    920809 8y0w:LU (3.4) BS01 rna ? GO:0002181 ... P35268 38698775
    920810 8y0w:LV (3.4) BS01 rna ? GO:0000122 ... P62829 38698775
    920811 8y0w:LW (3.4) BS01 rna ? GO:0002181 ... P83731 38698775
    920812 8y0w:LX (3.4) BS01 rna ? GO:0002181 ... P62750 38698775
    920813 8y0w:LX (3.4) BS02 rna ? GO:0002181 ... P62750 38698775
    920814 8y0w:LY (3.4) BS01 rna ? GO:0002181 ... P61254 38698775
    920815 8y0w:LY (3.4) BS02 rna ? GO:0002181 ... P61254 38698775
    920816 8y0w:LZ (3.4) BS01 rna ? GO:0002181 ... P61353 38698775
    920817 8y0w:La (3.4) BS01 rna ? GO:0002181 ... P46776 38698775
    920818 8y0w:Lb (3.4) BS01 rna ? GO:0002181 ... P47914 38698775
    920819 8y0w:Lc (3.4) BS01 rna ? GO:0002181 ... P62888 38698775
    920820 8y0w:Ld (3.4) BS01 rna ? GO:0002181 ... P62899 38698775
    920821 8y0w:Le (3.4) BS01 rna ? GO:0002181 ... P62910 38698775
    920822 8y0w:Le (3.4) BS02 MG ? GO:0002181 ... P62910 38698775
    920823 8y0w:Lf (3.4) BS01 rna ? GO:0002181 ... P18077 38698775
    920824 8y0w:Lg (3.4) BS01 rna ? GO:0002181 ... P49207 38698775
    920825 8y0w:Lg (3.4) BS02 MG ? GO:0002181 ... P49207 38698775
    920826 8y0w:Lg (3.4) BS03 ZN ? GO:0002181 ... P49207 38698775
    920827 8y0w:Lh (3.4) BS01 rna ? GO:0000463 ... P42766 38698775
    920828 8y0w:Lh (3.4) BS02 rna ? GO:0000463 ... P42766 38698775
    920829 8y0w:Li (3.4) BS01 rna ? GO:0002181 ... Q9Y3U8 38698775
    920830 8y0w:Lj (3.4) BS01 rna ? GO:0000448 ... P61927 38698775
    920831 8y0w:Lj (3.4) BS02 rna ? GO:0000448 ... P61927 38698775
    920832 8y0w:Lj (3.4) BS03 ZN ? GO:0000448 ... P61927 38698775
    920833 8y0w:Lk (3.4) BS01 rna ? GO:0002181 ... P63173 38698775
    920834 8y0w:Ll (3.4) BS01 rna ? GO:0002181 ... P62891 38698775
    920835 8y0w:Ll (3.4) BS02 rna ? GO:0002181 ... P62891 38698775
    920836 8y0w:Lm (3.4) BS01 rna ? GO:0002181 ... P62987 38698775
    920837 8y0w:Lm (3.4) BS02 ZN ? GO:0002181 ... P62987 38698775
    920838 8y0w:Lo (3.4) BS01 rna ? GO:0002181 ... P83881 38698775
    920839 8y0w:Lo (3.4) BS02 ZN ? GO:0002181 ... P83881 38698775
    920840 8y0w:Lp (3.4) BS01 rna ? GO:0002181 ... P61513 38698775
    920841 8y0w:Lp (3.4) BS02 ZN ? GO:0002181 ... P61513 38698775
    920842 8y0w:Lr (3.4) BS01 rna ? GO:0002181 ... P46779 38698775
    920843 8y0w:S (3.4) BS01 rna ? GO:0003723 ... Q8NC51 38698775
    920844 8y0w:SA (3.4) BS01 rna ? GO:0000028 ... P08865 38698775
    920845 8y0w:SB (3.4) BS01 rna ? GO:0002181 ... P61247 38698775
    920846 8y0w:SC (3.4) BS01 rna ? GO:0002181 ... P15880 38698775
    920847 8y0w:SD (3.4) BS01 rna 4.2.99.18 GO:0001228 ... P23396 38698775
    920848 8y0w:SE (3.4) BS01 rna ? GO:0002181 ... P62701 38698775
    920849 8y0w:SF (3.4) BS01 rna ? GO:0002181 ... P46782 38698775
    920850 8y0w:SG (3.4) BS01 rna ? GO:0002181 ... P62753 38698775
    920851 8y0w:SH (3.4) BS01 rna ? GO:0002181 ... P62081 38698775
    920852 8y0w:SI (3.4) BS01 rna ? GO:0002181 ... P62241 38698775
    920853 8y0w:SI (3.4) BS02 rna ? GO:0002181 ... P62241 38698775
    920854 8y0w:SJ (3.4) BS01 rna ? GO:0002181 ... P46781 38698775
    920855 8y0w:SK (3.4) BS01 rna ? GO:0002181 ... P46783 38698775
    920856 8y0w:SL (3.4) BS01 rna ? GO:0002181 ... P62280 38698775
    920857 8y0w:SN (3.4) BS01 rna ? GO:0000462 ... P62277 38698775
    920858 8y0w:SO (3.4) BS01 rna ? GO:0000028 ... P62263 38698775
    920859 8y0w:SP (3.4) BS01 rna ? GO:0000056 ... P62841 38698775
    920860 8y0w:SQ (3.4) BS01 rna ? GO:0000462 ... P62249 38698775
    920861 8y0w:SR (3.4) BS01 rna ? GO:0002181 ... P08708 38698775
    920862 8y0w:SS (3.4) BS01 rna ? GO:0002181 ... P62269 38698775
    920863 8y0w:ST (3.4) BS01 rna ? GO:0000028 ... P39019 38698775
    920864 8y0w:SU (3.4) BS01 rna ? GO:0002181 ... P60866 38698775
    920865 8y0w:SW (3.4) BS01 rna ? GO:0002181 ... P62244 38698775
    920866 8y0w:SX (3.4) BS01 rna ? GO:0002181 ... P62266 38698775
    920867 8y0w:SY (3.4) BS01 rna ? GO:0002181 ... P62847 38698775
    920868 8y0w:SZ (3.4) BS01 rna ? GO:0002181 ... P62851 38698775
    920869 8y0w:Sa (3.4) BS01 rna ? GO:0002181 ... P62854 38698775
    920870 8y0w:Sb (3.4) BS01 rna ? GO:0002181 ... P42677 38698775
    920871 8y0w:Sc (3.4) BS01 rna ? GO:0000028 ... P62857 38698775
    920872 8y0w:Sd (3.4) BS01 rna ? GO:0002181 ... P62273 38698775
    920873 8y0w:Se (3.4) BS01 rna ? GO:0003735 ... P62861 38698775
    920874 8y0w:Sg (3.4) BS01 rna ? GO:0001891 ... P63244 38698775
    920875 8y0x:CB (3.3) BS01 rna 3.6.5.- GO:0002039 ... P13639 38698775
    920876 8y0x:CB (3.3) BS02 rna 3.6.5.- GO:0002039 ... P13639 38698775
    920877 8y0x:LA (3.3) BS01 rna ? GO:0002181 ... P62917 38698775
    920878 8y0x:LA (3.3) BS02 MG ? GO:0002181 ... P62917 38698775
    920879 8y0x:LB (3.3) BS01 rna ? GO:0002181 ... P39023 38698775
    920880 8y0x:LC (3.3) BS01 rna ? GO:0002181 ... P36578 38698775
    920881 8y0x:LC (3.3) BS02 rna ? GO:0002181 ... P36578 38698775
    920882 8y0x:LD (3.3) BS01 rna ? GO:0000027 ... P46777 38698775
    920883 8y0x:LD (3.3) BS02 rna ? GO:0000027 ... P46777 38698775
    920884 8y0x:LE (3.3) BS01 rna ? GO:0002181 ... Q02878 38698775
    920885 8y0x:LF (3.3) BS01 rna ? GO:0000463 ... P18124 38698775
    920886 8y0x:LF (3.3) BS02 rna ? GO:0000463 ... P18124 38698775
    920887 8y0x:LG (3.3) BS01 rna ? GO:0000470 ... P62424 38698775
    920888 8y0x:LG (3.3) BS02 rna ? GO:0000470 ... P62424 38698775
    920889 8y0x:LH (3.3) BS01 rna ? GO:0002181 ... P32969 38698775
    920890 8y0x:LI (3.3) BS01 rna ? GO:0000027 ... Q96L21 38698775
    920891 8y0x:LI (3.3) BS02 rna ? GO:0000027 ... Q96L21 38698775
    920892 8y0x:LJ (3.3) BS01 rna ? GO:0000027 ... P62913 38698775
    920893 8y0x:LJ (3.3) BS02 rna ? GO:0000027 ... P62913 38698775
    920894 8y0x:LL (3.3) BS01 rna ? GO:0002181 ... P26373 38698775
    920895 8y0x:LL (3.3) BS02 rna ? GO:0002181 ... P26373 38698775
    920896 8y0x:LM (3.3) BS01 rna ? GO:0002181 ... P50914 38698775
    920897 8y0x:LN (3.3) BS01 rna ? GO:0002181 ... P61313 38698775
    920898 8y0x:LN (3.3) BS02 rna ? GO:0002181 ... P61313 38698775
    920899 8y0x:LO (3.3) BS01 rna ? GO:0002181 ... P40429 38698775
    920900 8y0x:LP (3.3) BS01 rna ? GO:0002181 ... P18621 38698775
    920901 8y0x:LP (3.3) BS02 rna ? GO:0002181 ... P18621 38698775
    920902 8y0x:LQ (3.3) BS01 rna ? GO:0002181 ... Q07020 38698775
    920903 8y0x:LR (3.3) BS01 rna ? GO:0002181 ... P84098 38698775
    920904 8y0x:LR (3.3) BS02 rna ? GO:0002181 ... P84098 38698775
    920905 8y0x:LS (3.3) BS01 rna ? GO:0002181 ... Q02543 38698775
    920906 8y0x:LS (3.3) BS02 rna ? GO:0002181 ... Q02543 38698775
    920907 8y0x:LT (3.3) BS01 rna ? GO:0001650 ... P46778 38698775
    920908 8y0x:LT (3.3) BS02 rna ? GO:0001650 ... P46778 38698775
    920909 8y0x:LU (3.3) BS01 rna ? GO:0002181 ... P35268 38698775
    920910 8y0x:LV (3.3) BS01 rna ? GO:0000122 ... P62829 38698775
    920911 8y0x:LW (3.3) BS01 rna ? GO:0002181 ... P83731 38698775
    920912 8y0x:LX (3.3) BS01 rna ? GO:0002181 ... P62750 38698775
    920913 8y0x:LX (3.3) BS02 rna ? GO:0002181 ... P62750 38698775
    920914 8y0x:LY (3.3) BS01 rna ? GO:0002181 ... P61254 38698775
    920915 8y0x:LY (3.3) BS02 rna ? GO:0002181 ... P61254 38698775
    920916 8y0x:LZ (3.3) BS01 rna ? GO:0002181 ... P61353 38698775
    920917 8y0x:La (3.3) BS01 rna ? GO:0002181 ... P46776 38698775
    920918 8y0x:Lb (3.3) BS01 rna ? GO:0002181 ... P47914 38698775
    920919 8y0x:Lc (3.3) BS01 rna ? GO:0002181 ... P62888 38698775
    920920 8y0x:Ld (3.3) BS01 rna ? GO:0002181 ... P62899 38698775
    920921 8y0x:Le (3.3) BS01 rna ? GO:0002181 ... P62910 38698775
    920922 8y0x:Le (3.3) BS02 MG ? GO:0002181 ... P62910 38698775
    920923 8y0x:Lf (3.3) BS01 rna ? GO:0002181 ... P18077 38698775
    920924 8y0x:Lg (3.3) BS01 rna ? GO:0002181 ... P49207 38698775
    920925 8y0x:Lg (3.3) BS02 MG ? GO:0002181 ... P49207 38698775
    920926 8y0x:Lg (3.3) BS03 ZN ? GO:0002181 ... P49207 38698775
    920927 8y0x:Lh (3.3) BS01 rna ? GO:0000463 ... P42766 38698775
    920928 8y0x:Lh (3.3) BS02 rna ? GO:0000463 ... P42766 38698775
    920929 8y0x:Li (3.3) BS01 rna ? GO:0002181 ... Q9Y3U8 38698775
    920930 8y0x:Lj (3.3) BS01 rna ? GO:0000448 ... P61927 38698775
    920931 8y0x:Lj (3.3) BS02 rna ? GO:0000448 ... P61927 38698775
    920932 8y0x:Lj (3.3) BS03 ZN ? GO:0000448 ... P61927 38698775
    920933 8y0x:Lk (3.3) BS01 rna ? GO:0002181 ... P63173 38698775
    920934 8y0x:Ll (3.3) BS01 rna ? GO:0002181 ... P62891 38698775
    920935 8y0x:Ll (3.3) BS02 rna ? GO:0002181 ... P62891 38698775
    920936 8y0x:Lm (3.3) BS01 rna ? GO:0002181 ... P62987 38698775
    920937 8y0x:Lm (3.3) BS02 ZN ? GO:0002181 ... P62987 38698775
    920938 8y0x:Lo (3.3) BS01 rna ? GO:0002181 ... P83881 38698775
    920939 8y0x:Lo (3.3) BS02 rna ? GO:0002181 ... P83881 38698775
    920940 8y0x:Lp (3.3) BS01 rna ? GO:0002181 ... P61513 38698775
    920941 8y0x:Lp (3.3) BS02 ZN ? GO:0002181 ... P61513 38698775
    920942 8y0x:Lr (3.3) BS01 rna ? GO:0002181 ... P46779 38698775
    920943 8y0x:S (3.3) BS01 rna ? GO:0003723 ... Q8NC51 38698775
    920944 8y0x:SA (3.3) BS01 rna ? GO:0000028 ... P08865 38698775
    920945 8y0x:SB (3.3) BS01 rna ? GO:0002181 ... P61247 38698775
    920946 8y0x:SC (3.3) BS01 rna ? GO:0002181 ... P15880 38698775
    920947 8y0x:SD (3.3) BS01 rna 4.2.99.18 GO:0001228 ... P23396 38698775
    920948 8y0x:SE (3.3) BS01 rna ? GO:0002181 ... P62701 38698775
    920949 8y0x:SF (3.3) BS01 rna ? GO:0002181 ... P46782 38698775
    920950 8y0x:SG (3.3) BS01 rna ? GO:0002181 ... P62753 38698775
    920951 8y0x:SH (3.3) BS01 rna ? GO:0002181 ... P62081 38698775
    920952 8y0x:SI (3.3) BS01 rna ? GO:0002181 ... P62241 38698775
    920953 8y0x:SI (3.3) BS02 rna ? GO:0002181 ... P62241 38698775
    920954 8y0x:SJ (3.3) BS01 rna ? GO:0002181 ... P46781 38698775
    920955 8y0x:SK (3.3) BS01 rna ? GO:0002181 ... P46783 38698775
    920956 8y0x:SL (3.3) BS01 rna ? GO:0002181 ... P62280 38698775
    920957 8y0x:SN (3.3) BS01 rna ? GO:0000462 ... P62277 38698775
    920958 8y0x:SO (3.3) BS01 rna ? GO:0000028 ... P62263 38698775
    920959 8y0x:SP (3.3) BS01 rna ? GO:0000056 ... P62841 38698775
    920960 8y0x:SQ (3.3) BS01 rna ? GO:0000462 ... P62249 38698775
    920961 8y0x:SR (3.3) BS01 rna ? GO:0002181 ... P08708 38698775
    920962 8y0x:SS (3.3) BS01 rna ? GO:0002181 ... P62269 38698775
    920963 8y0x:ST (3.3) BS01 rna ? GO:0000028 ... P39019 38698775
    920964 8y0x:SU (3.3) BS01 rna ? GO:0002181 ... P60866 38698775
    920965 8y0x:SW (3.3) BS01 rna ? GO:0002181 ... P62244 38698775
    920966 8y0x:SX (3.3) BS01 rna ? GO:0002181 ... P62266 38698775
    920967 8y0x:SY (3.3) BS01 rna ? GO:0002181 ... P62847 38698775
    920968 8y0x:SZ (3.3) BS01 rna ? GO:0002181 ... P62851 38698775
    920969 8y0x:Sa (3.3) BS01 rna ? GO:0002181 ... P62854 38698775
    920970 8y0x:Sa (3.3) BS02 ZN ? GO:0002181 ... P62854 38698775
    920971 8y0x:Sb (3.3) BS01 rna ? GO:0002181 ... P42677 38698775
    920972 8y0x:Sc (3.3) BS01 rna ? GO:0000028 ... P62857 38698775
    920973 8y0x:Sd (3.3) BS01 rna ? GO:0002181 ... P62273 38698775
    920974 8y0x:Se (3.3) BS01 rna ? GO:0003735 ... P62861 38698775
    920975 8y0x:Sg (3.3) BS01 rna ? GO:0001891 ... P63244 38698775
    920976 8y11:A (1.77) BS01 NAD N/A GO:0016491 ... A0AAE4G800 38918500
    920977 8y11:B (1.77) BS01 NAD N/A GO:0016491 ... A0AAE4G800 38918500
    920978 8y11:D (1.77) BS01 NAD N/A GO:0016491 ... A0AAE4G800 38918500
    920979 8y12:A (2.1) BS01 NAP N/A GO:0000785 ... A0A179FZ20 N/A
    920980 8y12:A (2.1) BS02 NAP N/A GO:0000785 ... A0A179FZ20 N/A
    920981 8y12:B (2.1) BS01 NAP N/A GO:0000785 ... A0A179FZ20 N/A
    920982 8y12:B (2.1) BS02 NAP N/A GO:0000785 ... A0A179FZ20 N/A
    920983 8y15:A (2.17) BS01 CHL N/A GO:0009765 ... P12333 39346626
    920984 8y15:A (2.17) BS02 CLA N/A GO:0009765 ... P12333 39346626
    920985 8y15:A (2.17) BS03 CLA N/A GO:0009765 ... P12333 39346626
    920986 8y15:A (2.17) BS04 CLA N/A GO:0009765 ... P12333 39346626
    920987 8y15:A (2.17) BS05 CHL N/A GO:0009765 ... P12333 39346626
    920988 8y15:A (2.17) BS06 CHL N/A GO:0009765 ... P12333 39346626
    920989 8y15:A (2.17) BS07 CHL N/A GO:0009765 ... P12333 39346626
    920990 8y15:A (2.17) BS08 CHL N/A GO:0009765 ... P12333 39346626
    920991 8y15:A (2.17) BS09 CHL N/A GO:0009765 ... P12333 39346626
    920992 8y15:A (2.17) BS10 CLA N/A GO:0009765 ... P12333 39346626
    920993 8y15:A (2.17) BS11 CLA N/A GO:0009765 ... P12333 39346626
    920994 8y15:A (2.17) BS12 CLA N/A GO:0009765 ... P12333 39346626
    920995 8y15:A (2.17) BS13 CLA N/A GO:0009765 ... P12333 39346626
    920996 8y15:A (2.17) BS14 CLA N/A GO:0009765 ... P12333 39346626
    920997 8y15:A (2.17) BS15 A1LXP N/A GO:0009765 ... P12333 39346626
    920998 8y15:A (2.17) BS16 A1LXP N/A GO:0009765 ... P12333 39346626
    920999 8y15:A (2.17) BS17 CHL N/A GO:0009765 ... P12333 39346626
    921000 8y15:B (2.17) BS01 CHL N/A GO:0009765 ... P12333 39346626

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).